BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46160.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494358 jgi|Araly1|494358|fgenesh2_kg.8__174__AT5G46160.2 904 0.0
> Ahg494358 jgi|Araly1|494358|fgenesh2_kg.8__174__AT5G46160.2
Length=573
Score = 904 bits (489), Expect = 0.0
Identities = 541/566 (96%), Gaps = 3/566 (1%)
Strand=Plus/Plus
Query 68 TTTCTCCATTAACAACGAATCTAAATGGCCGCTGCTTTTGCTTCCAGATTAACCCGAGGA 127
||| |||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 TTTTTCCAGTAACAACGAATCTAAATGGCGGCTGCTTTTGCTTCAAGATTAACCCGAGGA 60
Query 128 GGACGTTCATTGCTTGGAGGTCTTAACAATGGTGGTTCGATGAATTCTTCTAATGGAATG 187
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GGACGTTCATTGCTTGGAGGTCTTAACAATGGTGGTTTGATGAATTCTTCTAATGGAATG 120
Query 188 ATGAATGAAAGTATCCTCTCTCAGCAGCAGCAGAGAAGGACATTTATTCAGATGGGGACT 247
|||||||||||||||||||||||||| | ||| |||||||||| ||||| ||||||||
Sbjct 121 ATGAATGAAAGTATCCTCTCTCAGCA--A-CAGCGAAGGACATTCATTCAAATGGGGACA 177
Query 248 GTTCTCAAAGTCGTGGACAATTCAGGTGCGAAGAAAGTGATGTGTATTCAAGCTCTAAAG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTCTCAAAGTCGTGGACAATTCAGGTGCGAAGAAAGTGATGTGTATTCAAGCTCTAAAG 237
Query 308 GGGAAAAAAGGAGCTAGACTTGGAGATACTATAGTTGCTTCAGTGAAAGAAGCGATGCCA 367
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 238 GGTAAAAAAGGAGCTAGACTTGGCGATACTATAGTTGCTTCAGTGAAAGAAGCGATGCCA 297
Query 368 AACGGTAAAGTGAAGAAAGGAGCGGTTGTGTATGGTGTGGTTGTTCGTGCTGCGATGCAG 427
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 AACGGTAAAGTGAAGAAAGGAGCGGTTGTGTATGGTGTGGTTGTGCGTGCTGCGATGCAG 357
Query 428 AGAGGTCGTGTTGATGGAAGTGAAGTTAGGTTTGATGATAACGCGGTTGTTCTTGTTGAT 487
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAGGTCGTGTTGATGGAAGCGAAGTTAGGTTTGATGATAACGCGGTTGTTCTTGTTGAT 417
Query 488 AGTAAAGATAAGAATACTAAAACTGATCGCCAGCCGATTGGTACTAGAGTGTTTGGTCCT 547
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 418 AGTAAAGATAAGAATACTAAAACCGATCGCCAGCCGATTGGTACTAGAGTTTTTGGTCCT 477
Query 548 GTTCCTCATGAGCTTCGCAAGAAGAAACATCTCAAGATTCTTGCTTTGGCTCAACACGTT 607
||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 GTTCCGCACGAGCTTCGCAAGAAGAAACATCTCAAGATTCTTGCTTTGGCTCAACACATT 537
Query 608 GCGTGAGATGCAACAAAACCGTAAAC 633
|| ||||| ||||||||| ||||||
Sbjct 538 GCTTGAGACGCAACAAAAATGTAAAC 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5