BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46180.1
Length=1823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494356 jgi|Araly1|494356|fgenesh2_kg.8__172__AT5G46180.1 2435 0.0
Ahg947181 jgi|Araly1|947181|scaffold_703410.1 171 2e-41
> Ahg494356 jgi|Araly1|494356|fgenesh2_kg.8__172__AT5G46180.1
Length=1605
Score = 2435 bits (1318), Expect = 0.0
Identities = 1517/1613 (94%), Gaps = 14/1613 (1%)
Strand=Plus/Plus
Query 100 CTCTAATGGCAGCCACCACGAGACGGTTGCTTTACTATGTGTCCAAAAG-ATTCTCTACC 158
|||||||||||||||||||||||||||||||| ||| |||||| ||||| ||| |||||
Sbjct 1 CTCTAATGGCAGCCACCACGAGACGGTTGCTTCACTGTGTGTCTAAAAGAATT-ACTACC 59
Query 159 GCCGGAGTGCGGCGGAGCTATGGCGGTCTGCCACAATCGAATTCCAAATCTCCTCCGTCT 218
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 60 GCCGGAGTGCGGCGGAGCTATGGCGGTCTGCCACAATCGAATTCTAAATCTCCTCCGACT 119
Query 219 TCTTCTCAACGATTGATGGAATTGGAATCTGAATTCAGTGCCCACAATTACCATCCTGTT 278
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTCTCAACGATTGATGGAATTAGAATCTGAATTCAGTGCCCACAATTACCATCCTGTT 179
Query 279 CCGGTTGTGTTTTCTCGCGCGAATGGCTCAACTATATGGGACCCTGAAGGAAAGAGATAC 338
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 180 CCGGTTGTGTTTTCTCGCGCAAATGGCTCAACCATATGGGATCCTGAAGGAAAGAGATAC 239
Query 339 ATTGATTTTCTTGCAGCTTACTCTGCAGTTAATCAGGGACATTGTCATCCTAAGATCATG 398
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 240 ATTGATTTTCTTGCAGCTTACTCTGCTGTTAACCAGGGACATTGCCATCCTAAGATCATG 299
Query 399 AAGGCATTGCAGGAACAAGTGGAGAAGCTCACTTTAAGTTCACGAGCGTTTTACAACGAT 458
|||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||||
Sbjct 300 AAGGCATTGCAGGAACAAGTGGAGAAACTCACTTTAAGTTCACGTGCATTTTTCAACGAT 359
Query 459 AAATTCCCGGTATTTGCTGAGCGTCTCACAAACATGTTCGGTTATGATATGGTGCTTCCT 518
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AAATTCCCGGTATTTGCAGAGCGTCTCACAAATATGTTCGGTTATGATATGGTGCTTCCT 419
Query 519 ATGAACACGGGTGCTGAAGGTGTCGAAACTGCTTTGAAACTAGCAAGAAAATGGGGTCAT 578
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 ATGAACACGGGGGCTGAAGGTGTCGAAACAGCTTTGAAACTAGCAAGAAAATGGGGTCAT 479
Query 579 GAAAAGAAAAATATTCCCAAAGACGAGGCTATCATTGTCTCTTGTTGTGGCTGCTTTCAT 638
|||| |||||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||
Sbjct 480 GAAATGAAAAATATTCCCAAAGATGAGGTTATAATTGTCTCTTGCTGTGGCTGCTTCCAT 539
Query 639 GGACGTACATTAGCAATTGTTTCCATGAGTTGTGACAATGATGCTACTCGTGGATTCGGG 698
|| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 540 GGTCGTACATTAGCAATTATTTCCATGAGTTGTGACAACGATGCTACGCGTGGATTCGGG 599
Query 699 CCATTGTTGCCAGGGAATCTTAAAGTTGATTTTGGTGATGCGGATTCACTTGAGAAAATC 758
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 600 CCATTGTTGCCTGGGAATCTTAAAGTTGATTTTGGTGACGCTGATTCACTTGAGAAAATC 659
Query 759 TTTAAAGAAAAGGGAGATAGAATAGCGGGATTTCTATTCGAGCCTATTCAAGGCGAAGCT 818
||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 660 TTTAAAGAAAAAGGAGATAAAATAGCGGGATTTCTTTTCGAACCTATTCAAGGCGAAGCT 719
Query 819 GGAGTTATTATTCCTCCCGACGGTTACTTGAAAGCTGTTAGAGAACTCTGCACAAAATAC 878
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 720 GGAGTTATTATTCCTCCGGACGGTTATTTGAAAGCTGTTAGAGAACTCTGCACAAAACAC 779
Query 879 AATGTTTTGATGATAGCGGATGAAGTACAAAGCGGTCTGGCTAGATCCGGGAAGATGCTA 938
||||||||||||||||| |||||||||||||||||||| || |||||||| |||||| ||
Sbjct 780 AATGTTTTGATGATAGCAGATGAAGTACAAAGCGGTCTAGCAAGATCCGGAAAGATGTTA 839
Query 939 GCTTGTGATTGGGAAGAAATTCGTCCTGACATGGTGATACTTGGGAAAGCATTAGGTGGA 998
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 GCTTGTGACTGGGAAGAAATTCGTCCCGACATGGTGATACTTGGGAAAGCATTAGGTGGA 899
Query 999 GGAGTAATTCCAGTAAGTGCAGTGCTTGCTGATAAAGACGTGATGCTTCATATAAAACCT 1058
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 900 GGAGTAATTCCAGTAAGTGCAGTGCTTGCTGATAAAGATGTGATGCTTCATATCAAACCC 959
Query 1059 GGTCAACACGGAAGCACATTTGGTGGTAACCCTTTAGCTAGTGCTGTAGCTATGGCTTCT 1118
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 960 GGCCAACACGGAAGCACATTTGGTGGGAATCCTTTAGCTAGTGCTGTAGCTATGGCTTCT 1019
Query 1119 TTAGACGTTATCGTGGAAGAAAAACTCGTTGAAAGATCAGCAAGTCTTGGAGAGGAACTG 1178
||||||||||||| |||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1020 TTAGACGTTATCGAGGAAGAAAAACTAGTGGAAAGATCAGCAAGTCTTGGAGAGGAGCTG 1079
Query 1179 AGGATTCAATTGAATGAAATCAAGAAACAGTTTCCGAAGTACATAAAGGAAGTACGAGGA 1238
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1080 AGGATTCAATTGAATGAAATCAAGAAACAGTTTCCGGATTACATAAAGGAAGTACGAGGA 1139
Query 1239 AGAGG-CTTGTTTAATGCGATTGAGTTCAATAGCGAAAGCTTGTCCCCGGTTTCAGCTTA 1297
||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 AGAGGACT-GTTTAATGCGATTGAGTTCAATAGTGAAAGCTTGTCCCCGGTTTCAGCTTA 1198
Query 1298 CGATATTTGCTTGAGCTTGAAGGAGAGAGGAGTCTTGGCTAAACCTACTCACAACACTAT 1357
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1199 CGATATTTGCTTGAGCTTGAAGGAGAGAGGAGTCTTGGCTAAACCGACTCACAATACTAT 1258
Query 1358 TGTCCGGTTAACTCCACCACTCTCTATAAGCTCTGATGAACTCCGAGATGGATCTGAGGC 1417
|||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 1259 TGTCCGGTTAACTCCACCACTCTCCATAAGCTCTGATGAACTCCGAGAAGGCTCCAAGGC 1318
Query 1418 TCTTCACGATGTACTCGAGCTCGATCTTCCAAATCTGCTGAAAATCAATTCCGGTAAAAC 1477
|||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1319 TCTTCACGATGTTCTTGAGCTCGATCTTCCAAATCTGCGGAAAATCAATTCCGGTAAAAC 1378
Query 1478 TCCGGTTTCTCATATAACCGAGTGTGATCGCTGTGGAAGAAACCTCTATGCTTGAACCGG 1537
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CCCGGTTTCTCACATAACTGAGTGTGATCGCTGTGGAAGAAACCTCTATGCTTGAACCGG 1438
Query 1538 TTTGAAACTTGATTAGGTTCTGGTATAATTAGATTCTTTGTATCTTGTGATTTCCATAGG 1597
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 1439 TTTGAAACTTGACTAGGTTCTGGTTTAATTAGATTCTTTGTATCTTGTGATTTC-AC-G- 1495
Query 1598 ACACAGCACCGGTTTGGTATAAGAAA-TATATTAA-A-GTATAAGGCCGAACCGGATTCT 1654
| ||| |||| |||||||||| |||| ||||| || | |||||||||||||||||||| |
Sbjct 1496 AGACATCACCAGTTTGGTATA-GAAAATATAT-AATACGTATAAGGCCGAACCGGATTGT 1553
Query 1655 ACCGAGCTTGGTAGAAATAACTCTGGTTTATTTCTGGTTTGGCATTAAATAAA 1707
|||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1554 ACCGAGCTTGGTAGAAATAACTA-G-TTTATTTCTGGTTTGGCATTAAATAAA 1604
> Ahg947181 jgi|Araly1|947181|scaffold_703410.1
Length=205
Score = 171 bits (92), Expect = 2e-41
Identities = 139/162 (86%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 102 CTAATGGCAGCCACCACGAGACGGTTGCTTTACTATGTGTCCAAAAGA-TTCTCTACCGC 160
||||||| ||||| | |||||| |||||| ||| |||||| |||| | || |||| |||
Sbjct 18 CTAATGGGAGCCAATAAGAGACGATTGCTTCACTGTGTGTCTAAAACAGTT-TCTATCGC 76
Query 161 CGGAGTGCGGCGGAGCTATGGCGGTCTGCCACAATCGAATTCCAAATCTCCTCCGTCTTC 220
||||||||| ||||||||||||||| | || |||||||| || ||||||||| ||||||
Sbjct 77 CGGAGTGCGACGGAGCTATGGCGGTGTTCCGCAATCGAACTCTAAATCTCCTACGTCTTT 136
Query 221 TTCTCAACGATTGATGGAATTGGAATCTGAATTCAGTGCCCA 262
|| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 137 TTGTCAGCGATTGATGGAATTGGAATCTGAATTCAGTCCCCA 178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68448170265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5