BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46190.1
Length=2414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494355 jgi|Araly1|494355|fgenesh2_kg.8__171__AT5G46190.1 3552 0.0
Ahg493025 jgi|Araly1|493025|fgenesh2_kg.7__2458__AT4G18375.2 754 0.0
> Ahg494355 jgi|Araly1|494355|fgenesh2_kg.8__171__AT5G46190.1
Length=2363
Score = 3552 bits (1923), Expect = 0.0
Identities = 2170/2290 (95%), Gaps = 14/2290 (1%)
Strand=Plus/Plus
Query 130 CTT-GGTTGTGTAATTTGCAAAACAGACAACAATGGTTGAGCGTGGGAAGAGGACTCACA 188
||| |||| ||||| || || ||||| |||||||||||||||||||||||||||||||||
Sbjct 82 CTTGGGTTTTGTAA-TTCCATAACAGTCAACAATGGTTGAGCGTGGGAAGAGGACTCACA 140
Query 189 ATCGTTTCAGAGACAACAACAATGACAACAACCGGAATCAAAGGAGAAGACTTTCTTACG 248
||||||| |||||||| |||||||||||||| |||| |||| |||||||||||||||||
Sbjct 141 ATCGTTTTAGAGACAATAACAATGACAACAATAGGAACCAAAAGAGAAGACTTTCTTACG 200
Query 249 AATCCGAAGaaaaaaaGATCGATAACAAAGACGATCTCGTTGTTGTTTACAGAATCTTAT 308
|| |||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 201 AAACCGAAG---AAAAGACCGATAACAAAGACGATCTTGTTGTTGCTTACAGAATCTTAT 257
Query 309 GCCCAAGTGGTGTCATGGGAAGTGTTATAGGCAAAAGTGGCAAAGTTATTAACTTGATTA 368
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GCCCTAGTGGAGTCATGGGAAGTGTTATAGGCAAAAGTGGCAAAGTTATTAACTTGATTA 317
Query 369 GGCAAGAAACTAGAGCTAGGATCAAAGTTGTTGATCCTTTTCCAGGTTGTAGCGAAAGAG 428
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GGCAAGAAACTAGAGCTAGAATCAAAGTTGTTGATCCTTTTCCAGGTTGTAGCGAAAGAG 377
Query 429 TCATAACGATCTTTTGCTCGGTTTCGGAGAAGAAAGACATTGTTGACATTGAGTATAGTG 488
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| |
Sbjct 378 TCATAACGATCTTTTGCTCGGTTACGGAGAAGAAAGACATTGTCGACATTGAGAATAGCG 437
Query 489 AATTGGATTACTCTGTTCCTTTGTGTTCTGCTCAAGCTGCTCTTCTTAAAGTCCATGATG 548
||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 438 AATTGAATTACTCAATTCCTTTGTGTTCTGCTCAAGATGCTCTTCTTAAAGTCCATGATG 497
Query 549 CTATTGTGGCTTCTTTAGCTACTGCTGCTGAGAACACTAAGATTGATAGAGATGACT-TT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 498 CTATTGTGGCTTCTTTAGCTACTGCTGCTGAGAACACTAAGATTGATAGAGATGA-TATT 556
Query 608 AGAGAATGTCGTCTTTTAGTTCCGTCTAGTCAGTGTTCTATTGTCATTGGTAAATCTGGT 667
||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 557 AGAGAATGTCGCCTTTTAGTTCCGTCTAGTCAATGTTCTAATGTCATTGGTAAATCCGGT 616
Query 668 TCGATTATTAAGAACATTA-GAGGTAGAACTAGAGCTAACGTTAAGGTTGTCTCTAAAGA 726
|| ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 617 TCTATTATTAAGAAGATTAGGA-GTAGAACTAGAGCTAACGTTAAGGTTGTCTCTAAAGA 675
Query 727 TGTTTCTGATCCTTCTCACACTTGTGCCATGGATTTTGACAACATTGTTATGATATCTGG 786
|||||| |||||||| ||||||||||| ||||||||||||||||||||| |||| || ||
Sbjct 676 TGTTTCGGATCCTTCACACACTTGTGCTATGGATTTTGACAACATTGTTCTGATGTCCGG 735
Query 787 TGAGACTGAATCCGTGAAGAAGGCACTTTTCGCTGTTTCTGCAATCATGTACAAAGTCAG 846
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TGAGTCTGAATCCGTGAAGAAGGCACTTTTCGCTGTTTCTGCAATCATGTACAAAGTCAG 795
Query 847 TCCTCGAGAACAGATTCCTCTGGATACAACTGTCCAAGAAGTTCCCGCTAGTATTATAAT 906
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 796 TCCTCGAGAACAGATTCCTCTGGATACAACTGTCCAAGAAGTTCCCTCTAGTATTATAAT 855
Query 907 TCCCTCTGATCTGTCTATCTATCCACAAGCCGGTTTATACCCAAGTCAGGATTCTATTTT 966
||| || ||||| |||||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 856 TCCGTCAGATCTATCTATCTATCCACAAGGCGGTTTATACCCAAATCAGGATCCTATTTT 915
Query 967 CCAACATGGGGCTAATGTTTCATCGTTTATCGGTACACTACCTCAGGGTTATGGAGAAAA 1026
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 916 CCAACATGGGGCCAATGTTTCATCGTTTATCGGTACACTACCTCAGGGTTATGGGGAAAA 975
Query 1027 TGCTGCAAATCCTGTGCCGGTTTTTTCTGCTTCTGCTCTTCCTGTTGTTCATGGTTTTGG 1086
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 976 CGCTGCAAATCCAATGCCGGTTTTTTCTGCTTCTGCTCTTCCTGTGGTTCATGGTTTTGG 1035
Query 1087 TGGGTCTTCCAGATCAGAAAAGTTGGCTATAAAAGTTATTTGCTCTTCTTCCAAAATTGG 1146
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1036 TGGGTCTTCCAGATCAGAAAAGTTGGTTATAAAAGTTATTTGCTCTTCTTCCAAAATCGG 1095
Query 1147 TCGTGTTATCGGGAAAGGAGGATTAACCATTAAGGGAATAAGACAAGCAAGCGGGTCTCA 1206
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1096 CCGTGTTATTGGGAAAGGAGGATCAACCATTAAGGGAATAAGACAAGCAAGCGGGTCTCA 1155
Query 1207 TATCGAAGTTAATGACTCGAGGACAAATCATGATGATGACTGTGTTATCACTGTCACTGC 1266
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1156 TATCGAGGTTAATGACTCGAGGGCAAATCATGATGATGACTGTGTTATCACTGTCACTGC 1215
Query 1267 TACAGAGTCTCCTGATGATTTGAAGTCTATGGCGGTTGAAGCTGTTCTTCTACTTCAAGA 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 TACAGAGTCTCCTGATGATTTGAAGTCTATGGCGGTTGAAGCTGTTCTTCTACTTCAAGA 1275
Query 1327 GAAAATTAATGATGAAGACGAGGACAAAGTTAAAATGCAACTCCTTGTATCTTCTAAGGT 1386
|||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 1276 GAAAATTAATGATGAAGACGAGGAAAAAGTTAAAATGCAACTTCTTGTACCTTCTAAGGT 1335
Query 1387 AATAGGATGCATTATAGGGAAAAGTGGCTCAATCATAAGTGAAATCAGGAAAAGGACAAA 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 AATAGGATGCATTATAGGGAAAAGTGGCTCAATCATAAGTGAAATCAGGAAAAGGACAAA 1395
Query 1447 GGCCGATATTCATATCTCGAAAGGAAATAATACGCCTAAGTGTGCTGATCCCAATGATGA 1506
|||| ||||||| ||||| ||||| | ||||| |||||||||||| ||||||||||||||
Sbjct 1396 GGCCAATATTCACATCTCAAAAGGGAGTAATAAGCCTAAGTGTGCCGATCCCAATGATGA 1455
Query 1507 GCTCGTTGAGATATCTGGTGAAGTAAGCAATGTGAGAGATGCTCTTATTCAGATAGTTCT 1566
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1456 GCTCGTTGAGATATCGGGTGAAGTAAGCGATGTGAGAGATGCTCTTATTCAGATAGTTCT 1515
Query 1567 GAGGCTTCGAGATGATGTTTTAAGGGATAGAGAGACTGGTTCCAGGAATCAACCTCCTGC 1626
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1516 GAGGCTTCGAGATGATGTATTAAGGGATAGAGAGATTGGTTCCAGGAATCAACCTCCTGC 1575
Query 1627 AAGATCTGAGAATAACAATTTCTTCTCTTCAAGTAGTAGTAATACTGGTCTTGCACTTCC 1686
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1576 AAGATCTGAGAATAACAATTTCTTCTCTTCGGGTAGTAGTAATACTGGTCTTGCACTTCC 1635
Query 1687 T-CAATCTTTCATGTCTTCTGTTCCGCAAGTTGCTTCTGTAGATTTCAATAGGAGACCAG 1745
| || |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1636 TTCA-TCTTTCATGTCTTCTGTTCCACAAGTTGCTTCTGTAGATTTCGATAGGAGACCAG 1694
Query 1746 AAACCGGGAGCAGCATGAGCATGCTTCCTTCGAGTGGTGGAATCTATGGTTATGGAAGTT 1805
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1695 AAACTGGGAGCAGCATGAGCATGCTTCCTTCGAGCGGTGGACTCTATGGTTATGGAAGTT 1754
Query 1806 TTCCGGTGGGCAATA-CAAGTTATGGATCCAACTCCTCTTACTCATCCAATCTATATGGA 1864
||||||||||||||| || ||||||| ||||| || || |||||||||||||||||||||
Sbjct 1755 TTCCGGTGGGCAATAACA-GTTATGGGTCCAAGTCTTCGTACTCATCCAATCTATATGGA 1813
Query 1865 GGATTGCCTCAGTCTACTACTATGGAGGTTCGAATCCCAGCAAATGCAGTGGGTAAAGTT 1924
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 GGATTGCCTCAATCTACTACTATGGAGGTTCGAATCCCAGCAAATGCAGTGGGTAAAGTT 1873
Query 1925 ATGGGCAGAGGAGGAGGCAACTTGGACAACATAAGAAGGATATCAGGAGCCATGATAGAA 1984
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1874 ATGGGCAGAGGAGGAGGCAACTTGGATAACATAAGAAGGATATCAGGAGCTATGATAGAA 1933
Query 1985 ATTTCTGATTCCAAAAATTCCCATGGCGGTCGCGTTGCTCTCATTTCCGGGACATCTGAA 2044
||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 1934 ATTTCTGATTCCAAAAATTCCCATGGCGGTCGCATTGCTCTCATTTCCGGAACACCTGAA 1993
Query 2045 CAGAAGCGTACCGCAGAGAACTTGTTCCAAGCTTTTATCATGTCCACTTGAATAATTTGC 2104
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1994 CAGAAGCGTACCGCAGAGAACTTGTTCCAAGCTTTTATCATGTCCACTTGAATAGTATGC 2053
Query 2105 TCTGCCCCTTAATCCTTTTCCATGGAAGTGTGTTCCATCAATCTACCTCTCAGTGGATTT 2164
|||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2054 TCTGCCCCGTAATCCTTTTCCATGGAAGTGTGTTCCATCTATCTAGCTCTCAGTGGATTT 2113
Query 2165 CTTTGATCGGGTTTCTCAGGCTTTCCTCCTTCCATCAAGCTCATGTTTAGATATGGTTGC 2224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2114 CTTTGATCGGGTTTCTCAGGCTTTCCTCCTTCCATCAAGCTCATGTTTAGATATGGTTGG 2173
Query 2225 ATCTCTCATCAAACATTTCGGTATCTCA-TCTCGACTCAGTTACTTTTGGTTTCTCGTGC 2283
|| ||||||||||| |||||||||||| |||||| || ||||||||||||||||||| |
Sbjct 2174 ATATCTCATCAAACTTTTCGGTATCTCCGTCTCGATTCGGTTACTTTTGGTTTCTCGTTC 2233
Query 2284 TAGACATTTTATAGTCTTTCAGGACCATTCTTTTCCCCTTTCCTTGCGAGCTGTTCGTAC 2343
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 2234 TAGACATTTTATAGTCTTTCAGGATCATTCTTTTCCCCTTTCCCTGCGAGCTGTTCGTAC 2293
Query 2344 TATAACTACTTATCTCCGTGCAATAAAACAAAATCGTTCTTATATCAATCAAACTTTGCT 2403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2294 AATAACTACTTATCTCCGTGCAATAAAACAAAATCGTTCTTATATCAATCAAACTTTGTT 2353
Query 2404 TATTCTCCAT 2413
||||| ||||
Sbjct 2354 TATTCCCCAT 2363
> Ahg493025 jgi|Araly1|493025|fgenesh2_kg.7__2458__AT4G18375.2
Length=1828
Score = 754 bits (408), Expect = 0.0
Identities = 1198/1559 (77%), Gaps = 135/1559 (9%)
Strand=Plus/Plus
Query 195 TCAGAGACAACAACAATGACAACAACCGGAATCAAAGGAGAAGACTTTCTTACGAATCCG 254
||||||| ||||||||||| | |||||||||||||| |||| || |||| | |||
Sbjct 37 TCAGAGA-AACAACAATGAGAGCAACCGGAATCAAAAGAGACGAATTTC--A--AAT--- 88
Query 255 AA-GaaaaaaaGATCGATAACAAAGACGATCTCGTTGTTG-TTTACAGAATCTTATGCCC 312
|| | |||||||| || | ||| || | ||| || |||||||||||||||| ||
Sbjct 89 AATGGTGAAAAGATC---AATAGAGATGA--GC-TTG-TGATTTACAGAATCTTATGTCC 141
Query 313 AAGTGGTGTCATGGGAAGTGTTATAGGCAAAAGTGGCAAAGTTATTAACTTG--ATTAGG 370
| || ||| | ||| ||||||||||||| ||||| ||||| || || || ||||||
Sbjct 142 TATTGATGTTGTTGGAGGTGTTATAGGCAAGAGTGGTAAAGTCATCAA--TGCCATTAGG 199
Query 371 CAAGAA-ACTAGAGCTAGGATCAAAGTTGTTGATCCTTTTCCA-GGTTGTAGCGAAAGAG 428
| | || || | ||| | |||||||||| ||||| | || || ||||| ||| ||||||
Sbjct 200 C-ATAACACGAAAGCCAAGATCAAAGTTTTTGAT-CAGTTACATGGTTGCAGCCAAAGAG 257
Query 429 TCATAACGATCTTTTGCTCGGTTTCGGAGAAGAAAGACATTGTTGACATTGAGTATAGTG 488
||||||| |||| |||||||||| ||||| ||||| | | || || || | || ||
Sbjct 258 TCATAACAATCTATTGCTCGGTTAAAGAGAAAAAAGA-A--GAAGAAATCGATTTTA-TG 313
Query 489 AATTG-GATTACTCTGTTCCT-TTGTGTTCTGCTCAAGCTGCTCTTCTTAAAGTCCATGA 546
|| | || || | | ||| || |||| ||| |||| ||||||||||||||| ||||
Sbjct 314 AAGAGCGA-AAC-C-GAGCCTCTT-TGTTGTGCGCAAGATGCTCTTCTTAAAGTTTATGA 369
Query 547 TGCTATTGTGGCTTCTTTAGCTACTGCTGCTGAGAACACTAAGATTGATAGAGATGACTT 606
||| | | | | |||||| || || ||||||| |||||| ||||||||||| |
Sbjct 370 TGC-AAT-T-G------TAGCTAGTGATGAAGAGAACATTAAGATAGATAGAGATGA--T 418
Query 607 TAG-A-GAATGTCGTCTTTTAGTTCCGTCTAGTCAGTGTTCTA-TTGTCATTGGTAAATC 663
|| | ||||| ||||||||||||||||||||||| | || || || | |||||||| |
Sbjct 419 AAGAAGGAATGCCGTCTTTTAGTTCCGTCTAGTCAATCTTTTAGTT-TGATTGGTAAGGC 477
Query 664 TGGTTCGATTATTAAGAACATTAGAGGTAGAACTAGAGCTAACGTTAAGGTTGTCTCTAA 723
|||| || ||||||| || ||| ||| |||| |||||| ||||||||||| || ||
Sbjct 478 TGGTGAGAACATTAAGAGGATAAGAAGTACAACTCGAGCTAGTGTTAAGGTTGTTTCGAA 537
Query 724 AGATGTTTCTGATCCTTCTCACACTTGTGCCATGGATTTTGACAACATTGTTATGATATC 783
||||||||| |||||||| || |||||||||||||| |||||| || ||| |||||||
Sbjct 538 AGATGTTTCGGATCCTTCACATGTTTGTGCCATGGATTATGACAATATAGTTGTGATATC 597
Query 784 TGGTGAGACTGAATCCGTGAAGAAGGCACTTTTCGCTGTTTCTGCAATCATGTACAAAG- 842
||||||| |||||||||||||||| || ||||||||||||||||||||| ||||| |||
Sbjct 598 TGGTGAGCCTGAATCCGTGAAGAAAGCGCTTTTCGCTGTTTCTGCAATCCTGTAC-AAGA 656
Query 843 TCAGTCCTCGAGAACAGATTCCTCTGGATACAACTGTCCAAGAAGTTCCCGCTAGTATTA 902
||| |||||||||||| |||||||| ||| |||| | |||||| ||||| ||||||||||
Sbjct 657 TCAATCCTCGAGAACATATTCCTCTAGATTCAACCGGCCAAGATGTTCCAGCTAGTATTA 716
Query 903 TAATTCCCTCTGATCTGTCT-A-----TCTATCCACAAGCCGG-TTTATACCCAAGTCAG 955
|| || | || ||||| ||| | ||||||| ||| | || ||| ||| ||| |||
Sbjct 717 TAGTTTCATCAGATCTTTCTAATTCTGTCTATCCTCAAACTGGATTT-TACTCAAACCAG 775
Query 956 GATTC-TATT-TTC--CAAC-A-TGGG-G---C-TAATGTTTC-ATCG-TTTATCGGTAC 1002
|| || |||| ||| |||| | ||| | | | || |||| || | |||| |||
Sbjct 776 GA-TCATATTCTTCAGCAACGAGCGGGTGTTCCGTCATATTTCAAT-GCACTATCTGTA- 832
Query 1003 ACT-AC-CTCAGGGTTATGGAGAAAATGCTGCAAATCCTGTGCCGGTTTTTTCTGCTTCT 1060
| || ||| ||||||| ||||| ||||| ||||| |||| | |||| |||||||
Sbjct 833 TTTAACTTTCAAGGTTATGCAGAAACCGCTGCGAATCCAATGCC--TGTTTT-TGCTTCT 889
Query 1061 GCTCTTCCTGTTG-TTCATGGTTTTGGTGGGTCTTCCAGATCAGAAAAGTTGGCTATAAA 1119
|||| || | || |||||||||||||||||||||||| |||||| || ||| | ||||
Sbjct 890 TCTCTCCCAG-TGACTCATGGTTTTGGTGGGTCTTCCAGGTCAGAAGAGCTGGTTTTAAA 948
Query 1120 AGTTATT-TGCTCTTCT-TCCAAAATTGGTCGTGTTATCGGGAAAGGAGGATTAACCATT 1177
|| | || ||| ||| | ||||| ||| |||||| |||||||||||||| | |||||||
Sbjct 949 AG-TGTTGTGCCCTT-TGTCCAATATTACTCGTGTAATCGGGAAAGGAGGGTCAACCATT 1006
Query 1178 AAGGGAATAAGACAAGCAAGCGGGTCTCATATCGAAGTTAATGACTCGAGGACAAA---T 1234
|| |||||||| |||| ||||| ||| ||| || ||||||||||| || ||||| |
Sbjct 1007 AAAAGAATAAGAGAAGCTAGCGGTTCTTGTATTGAGGTTAATGACTCAAGAACAAAGTGT 1066
Query 1235 CATGATGATGACTGTGTTATCACTGTCACTGCTACAGAGTCTCCTGATGATTTGAAGTCT 1294
||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1067 GGTGATGATGAGTGTGTTATCATTGTCACTGCTACAGAGTCTCCTGATGATATGAAGTCT 1126
Query 1295 ATGGCGGTTGAAGCTGTTCTTCTACTTCAAGAGAAAATTAATGATGAAGAC-GAGGACAA 1353
||||| ||||||||||||||||| || |||||| | || || ||||| || | ||| ||
Sbjct 1127 ATGGCTGTTGAAGCTGTTCTTCTTCTGCAAGAGTATATCAACGATGA-GAATGCGGAAAA 1185
Query 1354 AGTTAAAATGCAACTCCTTGTATCTTCTAAGG-TAATAGGATGCATTATAGGGAAAAGTG 1412
|||||| |||||||| ||||| |||||||||| || | ||||| |||||||||||||||
Sbjct 1186 AGTTAAGATGCAACTTCTTGTTTCTTCTAAGGATATT-GGATGTGTTATAGGGAAAAGTG 1244
Query 1413 GCTCAATCATAAGTGAAATCAGGAAAAGGACAAAGGCCGATAT-TCATATCTCGAAAGGA 1471
||||| |||||| |||||||||||||| || || || |||| | ||||||||||||
Sbjct 1245 GCTCAGTCATAAACGAAATCAGGAAAAGAACCAATGCTAATATCTG-TATCTCGAAAGGG 1303
Query 1472 AATAATACGCCTAAGTGTGCTGATCCCAATGATGAGCTCGTTGAGATATCTGGTGAAGTA 1531
|| || | | | || | || || |||| || || | |||||| |
Sbjct 1304 AA-AA-AGG---A--TG-----A-CCT--TGTTGAG---GT--AG----CGGGTGAAATC 1339
Query 1532 AGCAATGTGAGAGATGCTCTTATTCAGATAGTTCTGAGGCTTCGAGATGATGTTTTAAGG 1591
|||| ||||||||| ||||| |||||||| ||||| || |||||||| ||||||||| ||
Sbjct 1340 AGCAGTGTGAGAGACGCTCTCATTCAGATCGTTCTAAGACTTCGAGAGGATGTTTTA-GG 1398
Query 1592 -GATAGAGAGACTGGTT-C--C-AGGAATCAACCTCCTGCAAGATCTGAGAATAACAATT 1646
|||||||| | || || | | || | |||||||||||||| |||| ||| | | ||
Sbjct 1399 AGATAGAGATATTG-TTGCTACTAGTAGGAAACCTCCTGCAAGAACTGATAATTATAGTT 1457
Query 1647 TCTTCTCTTCAAGTAGTAGTAATACTGGTCT-TGCACTTCCTCAATCTTTCATGTCTTC 1704
| ||||| ||||||||||| | ||| | | ||||||| || |||||||||||
Sbjct 1458 TATTCTCGG---GTAGTAGTAATGCCGGT-TATACACTTCCG---TCGTTCATGTCTTC 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90959505060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5