BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46200.1
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915456 jgi|Araly1|915456|Al_scaffold_0008_207 1751 0.0
> Ahg915456 jgi|Araly1|915456|Al_scaffold_0008_207
Length=1221
Score = 1751 bits (948), Expect = 0.0
Identities = 1144/1236 (93%), Gaps = 24/1236 (2%)
Strand=Plus/Plus
Query 85 ATGGCTTCTCTTTGGCTGAAGTTAATCTCCATAAGTCTAATATACCTCAATGTTATCGCT 144
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTCTTTGGCTGAAGTTATTCTTGATAAGTCTAATATACCTCAATGTTATCGCT 60
Query 145 AAATCAACTCCGCATCAAGAAAGCGAATTCGAATGTGTCTCTATAGACAAACAATCTGCA 204
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 61 AAATCAACTCCGCATCAAGAAACCGAATTCGAATGCGTCTCTATAGACAAACAATCTGCA 120
Query 205 CTACAACATCCTCTAATGAAGAATCATCGCATACAGACTAGACCAAGTCGAGAGCTTCTA 264
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 121 TTACAACATCCTCTAATGAAGAATCATCGTATACAGACTAGACCAAGTCGAGAGCTTTTA 180
Query 265 TCAATACTCTCTACGTCCAATGGTAACATACTCAGAGAGATTGATTTGAAGGGATCAGAA 324
|||||||| ||||||||||| | | ||| | | ||| |||||||||||||||||||||||
Sbjct 181 TCAATACTGTCTACGTCCAAAGATGACAGAATTAGAAAGATTGATTTGAAGGGATCAGAA 240
Query 325 GAATGTCCAAAGGGACAAGTACCGATTCATAAACAAAAAACCAACTTAACCAATAGTCTT 384
||||||||||||||||||||||| || ||||||| ||||||||| | | | ||||
Sbjct 241 GAATGTCCAAAGGGACAAGTACCTATCCATAAACCAAAAACCAA--T-----A-A-TCTT 291
Query 385 ATTCATCCCCAACAAATT-CATAGAGCAGGCCGTATCCTGAAAC-AA-----AGTCGCAG 437
|||||||||||||||||| || |||||||||||| ||||||||| || ||||||||
Sbjct 292 ATTCATCCCCAACAAATTCCA-AGAGCAGGCCGTCTCCTGAAACAAACTCGCAGTCGCAG 350
Query 438 GGATAAAAAGAAGAAAAAGAACAATCGACGTaaaaaaaataaaaataaaCTCATGATCCC 497
|| |||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
Sbjct 351 GGTTAAAAAGAAGAAAAAGAACAATCGACGTAAAAAAGATAAAAATAAACT--T-ATCAC 407
Query 498 TTCTGCATTGTTGTCTCaaaaaaaTAAGATTCCTCA-CCACCAGCCAAAATTATTTACAG 556
||||||| ||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 408 TTCTGCAGTGTTGTCTCAAAAAAATAAGAACCCT-ATCCACCGGCCAAAATTATTTACAG 466
Query 557 AGACACATCTACATTATGCAATTGTTAGGACATTTGAAAACACGACAAAGAAATGGCGTG 616
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 467 AGACTCATCTACATTATGCAATTGTTAGGACATTTGAAAATACGACAAAAAAATGGCGTG 526
Query 617 GAGCACAAGCATTGTTCAATATTAACAAGCCCCGAGTGGTGCAAAATCAATTTAGTAAGG 676
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GAGCACAAGCATTGTTCAGTATTAACAAGCCCCGAGTGGTGCAAAATCAATTTAGTAAGG 586
Query 677 CTTGGATTTGGCTTAATTACATTCAAGGAAGCTTAATGAGCAGCATCCAGTTTGGTTGGG 736
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 587 CTTGGATTTGGCTTAATTACATACAAGGAAGCGTAATGAGCAGCATCCAGTTTGGTTGGG 646
Query 737 CTGTGCATACGAATTTATATTCAGACGATCGTCCAAGACTAACTACGTTTTGGATGTCAG 796
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 647 CTGTGCATACGAATTTATATCCAGACGATCGTCCAAGACTAACCACGTTTTGGATGTCAG 706
Query 797 ATCAGCATCCAAAAGGATGTTACAATGCGTTATGTCCAGGAGGTTATGTTCAAATTCATA 856
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ATAACCATCAAAAAGGATGTTACAATGCGTTATGTCCAGGAGGTTATGTTCAAATTCATA 766
Query 857 AATCAATCTACCCCGGTTTGGTGTATGATAAAGTTAATGCTCTAGGAGGAAAACAGAACA 916
|||||||||||||||||||||| ||||||||||| |||| || || ||||||||| ||||
Sbjct 767 AATCAATCTACCCCGGTTTGGTTTATGATAAAGTCAATGTTCCAGTAGGAAAACAAAACA 826
Query 917 CTGTCCATCTTTCTGTTGCTGAGGATCCAGTGACCAAAAATTGGGTATTGACGATAGGAT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 827 CTGTCCATCTTTCTGTTGCTGAGGATCCAGTGACCAAAAATTGGGTATTGACGGTAGGAT 886
Query 977 CCATAATGATAGGCTATTGGCCACGTCAAAGTCAGATGGTAGATGGAGCTTCTGAAGTAT 1036
||||||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 887 CCATAATGATAGGGTATTGGCCACGTCAAAGTCACATGGCAGAAGGAGCTTCTGAAGTAT 946
Query 1037 ACTTCGGTGGATTTGCAGGAAACACTGCATCGTCTCAACCGACGACAAGCCCACCAATGG 1096
| ||||||||||||||||||| || || || ||||||||| |||||||||||||| ||||
Sbjct 947 ATTTCGGTGGATTTGCAGGAATCAGTGAATTGTCTCAACCCACGACAAGCCCACCTATGG 1006
Query 1097 GAACTGGAGAGTTTCCGACAAAAGATTTGAGTCGGTCTTGTTTCATGAAACAGCTTAAAT 1156
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1007 GAACTGGAGAGTTTCCGACAAAAGATCTGAGTCGGTCTTGTTTCATGAAACAACTTAAAT 1066
Query 1157 ATGTTCTTTCGGATTATTCAGTTGTGGATATTAATGCCAACGAGGTAGAACAGTATGTGG 1216
||||||||||||||||| ||||||||||||| ||| |||||||||||||| | |||||||
Sbjct 1067 ATGTTCTTTCGGATTATACAGTTGTGGATATCAATCCCAACGAGGTAGAAGATTATGTGG 1126
Query 1217 ATAGTCGTAAGTGTTATGGTGTAATGTTTC-TCAAGTATGTAGATTATGATTCCAGAGAG 1275
||| |||||||||||||||| |||||||| | |||||||||||||||||||| |||||
Sbjct 1127 ATAATCGTAAGTGTTATGGTTTAATGTTTTAT-AAGTATGTAGATTATGATTCTAGAGAA 1185
Query 1276 ACTCTTACGTTTGGAGGACCTGGTGGACAATGTTGA 1311
||||||||||||||||||||||||||||||||||||
Sbjct 1186 ACTCTTACGTTTGGAGGACCTGGTGGACAATGTTGA 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5