BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46220.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494352 jgi|Araly1|494352|fgenesh2_kg.8__168__AT5G46220.1 2311 0.0
> Ahg494352 jgi|Araly1|494352|fgenesh2_kg.8__168__AT5G46220.1
Length=1502
Score = 2311 bits (1251), Expect = 0.0
Identities = 1426/1510 (94%), Gaps = 14/1510 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCATCCTCTTCAACACCAATCACTCTCACCAAAAATGAATAATAAATAAACCAT 60
|||||||| || |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1 TCTTCTTCTTCATCTTCAACACCAATCACTCTCAAC-AAAATGAATAATAAATAAACCAT 59
Query 61 AAATCTCTCTTTTATCCAATGGGAAAATTCATCACAACCACACTATCTCCACCGCTCTAT 120
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAATCTCTCTTTT-TCCGATGGGAAAATTCATCACAACCACACTATCTCCACCGCTCTAT 118
Query 121 GCCCGATCAAAGCTTCTCTGTTTTTCACTTCTCTACTTATTCAGTACAATC-TT-TCTGT 178
|| |||||||| || ||||||||||| |||||||||||||||| ||| || || ||| |
Sbjct 119 GCTCGATCAAAACTCCTCTGTTTTTCTCTTCTCTACTTATTCACTAC--TCTTTCTCTAT 176
Query 179 TCCTCTACGTATCTCTCTCAAGAAACCAATGCATCTTTCGATATTCGCCATTTGATCCGA 238
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 TCCTCTATGTATCTCTCTCAAGAAACCAATGCGTCTTTCGATATTCGCCATTTGATCCGA 236
Query 239 TTCAAGCAAAACTTTTCTCTTATCCTTCTTCTTATGGTGAACATAAATATGCTCTTCCCA 298
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 237 TTCAACCAAAACTTTTCTCTTATCCTTCTTCTTATGGTGAACACAAATATGCTCTTCCCA 296
Query 299 CTCATCGATCTTCTTGTTCTTCCCCTATTTTCTTTTCAGATTATTGGACAGTGTTGAAAG 358
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 297 CTCATCGATCTTCTTGTTCTTCCCCTGTTTTCTTTTCAGATTATTGGACAGTGTTGAAGG 356
Query 359 AGATACAGAGTATCTTGAGCGGTTCATCACCA-AAGGAAAATTTGAGATATATCAATGGA 417
||||||||||||||||||| | ||||||| || || |||||||||||||| || ||||||
Sbjct 357 AGATACAGAGTATCTTGAGTGATTCATCATCACAA-GAAAATTTGAGATACATTAATGGA 415
Query 418 AAAAGTGAAAGTTTCGGTGGAAATTTCAGTACTCAGAAGAGATTTTCTTATTTCAATCAT 477
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 416 AAAAGTGAGAGTTTCGGTGGTAATTTTAGTACTCAGAAGAGATTTTCTTATTTCAACCAT 475
Query 478 TCGAACATTGACGTCGAAGTTCCATGCGGCTTCTTCAGAGATTTTCCGGTCAGCAATTCC 537
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCGAACATTGACATCGAAGTTCCATGCGGCTTCTTCAGAGATTTTCCGGTCAGCAATTCC 535
Query 538 GATAGAGTTGAGATGGAGAAATGTGGACTAGTAGTTGCATCAGCCATTTTTAACGACCAT 597
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 536 GATAGAGTTGAGATGGAGAAATGTGGACTAGTAGTTGCATCAGCTATTTTTAACGACCAT 595
Query 598 GACAAGATAAGACAACCAGTGGGACTTGGAGTTAAGACCTTAGAAACCGTTTGCTTCTAC 657
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 596 GACAAGATTAGACAACCAGTGGGACTCGGAGTTAAAACCTTAGAAACCGTTTGCTTCTAC 655
Query 658 ATGTTCATCGACGATAAAACCTTAAATTCTCTCTTCCACCACAATGTCATCCTGAAAAAC 717
||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 656 ATGTTCATCGACGATAAAACCCAAAATTCTCTCTTTCACCACAATGTCATCCTCAAAAAC 715
Query 718 AATCCAAGTGATTATAGAGTTGGTGCATGGAGAATCATCAAAATTTCGAAATCCGAAAAT 777
||||||| ||||||||||| || ||||||||| |||||||||| || |||||||||||
Sbjct 716 AATCCAAAAGATTATAGAGTCGGCGCATGGAGAGTCATCAAAATCTCAAAATCCGAAAAC 775
Query 778 CTATACCTTAATCCGGCTATGAACGGGGTTATACCAAAGTATCTAATTCATAGATTGTTT 837
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 776 CTATACCTTAACCCGGCTATGAACGGGGTTATACCAAAGTATCTAATACATAGATTGTTT 835
Query 838 CCAAACTCAAAGTTCAGTATATGGGTCGATGCGAAAATTCAGCTCATGATTGATCCGCTA 897
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 836 CCAAACTCAAAGTTTAGTATATGGGTTGATGCGAAAATTCAGCTCATGATCGATCCGCTA 895
Query 898 CTTCTAATTCATTCAATGTTAGTAGTGCCTGAAGTCG-ATATGGCGATATCGAAACATCC 956
|||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 896 CTTCTAATTCATTCAATGTTAGTAGTGCCTGAAG-CGGATATGGCGATATCTAAACATCC 954
Query 957 GTTTTTTGTTAATACAATGGAGGAAGCTATGGCTACCGCGCGGTGGAAGAAATGGGGCGA 1016
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 955 GTTTTTTGTAAATACAATGGAGGAAGCTATGGCTACCGCGAGGTGGAAGAAATGGGGCGA 1014
Query 1017 TGTCGACGGGCTAAGGATTCAAATGGAGACTTATTGTGAGCATGGTTTGAAGCCTTGGAG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGTCGACGGGCTAAGGATTCAAATGGAGACTTATTGTGAGCATGGTTTGAAGCCTTGGAG 1074
Query 1077 CTCT-AGTAAGTTGCCATATCCCACAGATGTACCAGATACCGCGTTGATACTGCGAAGAC 1135
||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1075 TTCTCA-TAAGTTGCCATATCCCACAGATGTACCAGATACCGCGTTGATATTGCGAAGAC 1133
Query 1136 ACGGAATCAGAAGCAACCTATTCTCGTGTTTCATGTTCAACGAGTTAGAAGCGTTTAACC 1195
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1134 ACGGAATCAGAAGCAACCTATTCTCGTGCTTCATGTTCAACGAGTTAGAATCGTTTAACC 1193
Query 1196 CGCGAGACCAATTGGCGTTTGCGTTTGTGAGGGATCACATAAACCCGAAGGTGAAAATGA 1255
||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1194 CGCGAGACCAATTAGCATTTGCGTTTGTGAGAGATCACATAAACCCTAAGGTGAAAATGA 1253
Query 1256 ACATGTTTGAAGTCGAAGTGTTCGAGCAAGTAGTTGTTGAATACAGACACAATCTCAAGA 1315
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1254 ACATGTTTGAAGTTGAAGTGTTTGAGCAAGTAGTTGTTGAATACAGACACAATCTCAAGA 1313
Query 1316 AGATTGAGAGC-TCTACGTATGAGGAACAAGAAGAAGAACAGAAACAAGAATCGTTGAGG 1374
||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AGATTGAGA-CATCTACGTACGAGGAACAAGAAGAAGAACAGAAACAAGAATCGTTGAGG 1372
Query 1375 ACAATACAAAAGAGAAGAAAATGGCTAGATCATGAATCTTGGTCTCTCAATCGTAGTAGC 1434
| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1373 AAAATAAAAAAGAGAAGAAAATGGTTAGATCATGAATCTTGGTCTCTCAATAGTAGTAGC 1432
Query 1435 TGTAAGAATTATCTCACGGATATGTGGGGCTAAAACTCATAATTGAtttttttCTTTTAT 1494
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |
Sbjct 1433 TGTAAGAATTATCTCACGGATATGTGGGGCTGAATCTCACCATTGATTTTTTTCTTTTCT 1492
Query 1495 TATCTTTATA 1504
||||||||||
Sbjct 1493 TATCTTTATA 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5