BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46230.1
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494351 jgi|Araly1|494351|fgenesh2_kg.8__167__AT5G46230.1 798 0.0
> Ahg494351 jgi|Araly1|494351|fgenesh2_kg.8__167__AT5G46230.1
Length=559
Score = 798 bits (432), Expect = 0.0
Identities = 522/563 (93%), Gaps = 15/563 (3%)
Strand=Plus/Plus
Query 4 ACCACAAATCTCATCGAAATGTCGTCTCAAGAAACGAAATCAGATCAAAGAGAAGGAGCA 63
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ACCACAAATCTCATCAAAATGTCGTCTCTAGAAACGAAATCAGATCAAAGAGAAGGAGCA 60
Query 64 GAGATCTGCAATGGCGAATCAAACTGCAAACAGAAAGCCAAAGAGATTTTATCAACCATG 123
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 GAGATCTGCAATGGCGAATCAAACTGCAAACAAAAAGCCAAAGAGATCTTATCAACCATG 120
Query 124 AATCTACCCAAAGGTCTTCTTCC-TCTAGACAACATGACAGAGATCGGTCACAACAAATC 182
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 121 AATCTACCCAAAGGACTTCTTCCAT-TAGACAACATGACAGAGATCGGTCACAACAAATC 179
Query 183 AACCGGTTATGTCTGGATCAAGATCAAGAACAAGGTTCAACATCGGTTTAAAGCCATTGG 242
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 180 AACCGGTTATGTCTGGATCAAGATCAAGAACAAGGTTCAACATCGGTTCAAAGCCATCGG 239
Query 243 ACGAAACGTATCTTACGATTCGGAGGTTACTGCGATCCTTGAGAATCGTCGGATGAGTCA 302
| ||||||||| |||||||| ||||||||||||||| ||||||||||||||||| | ||
Sbjct 240 AAAAAACGTATCGTACGATTCAGAGGTTACTGCGATCGTTGAGAATCGTCGGATGCGACA 299
Query 303 GCTCAC-GGGAATCAAGAGCAAAGAGATTTTGATTTGGGTTACGATCTCTGAGATCTTTG 361
||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTTACTGGGA-TCAAAAGCAAAGAGATTTTGATTTGGGTTACGATCTCTGAGATCTTTG 358
Query 362 TTAATCATCAAGATCCGACTCA-AATCACTTTTGCTAATCCTACGGGACTATCACGTACT 420
||||| |||||||||||||| | |||||||||||||||||||||||| || |||||||||
Sbjct 359 TTAATGATCAAGATCCGACT-ATAATCACTTTTGCTAATCCTACGGGTCTGTCACGTACT 417
Query 421 TTCCCCGTCACTGCTTTTGAAGAAGACGAATGATTC--ATTT-GTCAACGCTCACCATCA 477
||||||||||||||||||||||||||| | ||||| |||| ||||||||||| ||| |
Sbjct 418 TTCCCCGTCACTGCTTTTGAAGAAGACCAGTGATTTTGATTTTGTCAACGCTCATCATTA 477
Query 478 TGATACTTTGCTTAGCTAAATTATCTTT-TGTT-TTTTC--CTTATAATTCCTTTTGTTT 533
|||||||||||||||||||||||||||| | || |||| |||||||||||||||||||
Sbjct 478 TGATACTTTGCTTAGCTAAATTATCTTTCTTTTCTTTTTTTCTTATAATTCCTTTTGTTT 537
Query 534 AGCTAAGTTCTATT-TTCAACAT 555
||||||||||| || ||||||||
Sbjct 538 AGCTAAGTTCT-TTCTTCAACAT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5