BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46230.1 Length=606 Score E Sequences producing significant alignments: (Bits) Value Ahg494351 jgi|Araly1|494351|fgenesh2_kg.8__167__AT5G46230.1 798 0.0 > Ahg494351 jgi|Araly1|494351|fgenesh2_kg.8__167__AT5G46230.1 Length=559 Score = 798 bits (432), Expect = 0.0 Identities = 522/563 (93%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 4 ACCACAAATCTCATCGAAATGTCGTCTCAAGAAACGAAATCAGATCAAAGAGAAGGAGCA 63 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 ACCACAAATCTCATCAAAATGTCGTCTCTAGAAACGAAATCAGATCAAAGAGAAGGAGCA 60 Query 64 GAGATCTGCAATGGCGAATCAAACTGCAAACAGAAAGCCAAAGAGATTTTATCAACCATG 123 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 61 GAGATCTGCAATGGCGAATCAAACTGCAAACAAAAAGCCAAAGAGATCTTATCAACCATG 120 Query 124 AATCTACCCAAAGGTCTTCTTCC-TCTAGACAACATGACAGAGATCGGTCACAACAAATC 182 |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| Sbjct 121 AATCTACCCAAAGGACTTCTTCCAT-TAGACAACATGACAGAGATCGGTCACAACAAATC 179 Query 183 AACCGGTTATGTCTGGATCAAGATCAAGAACAAGGTTCAACATCGGTTTAAAGCCATTGG 242 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 180 AACCGGTTATGTCTGGATCAAGATCAAGAACAAGGTTCAACATCGGTTCAAAGCCATCGG 239 Query 243 ACGAAACGTATCTTACGATTCGGAGGTTACTGCGATCCTTGAGAATCGTCGGATGAGTCA 302 | ||||||||| |||||||| ||||||||||||||| ||||||||||||||||| | || Sbjct 240 AAAAAACGTATCGTACGATTCAGAGGTTACTGCGATCGTTGAGAATCGTCGGATGCGACA 299 Query 303 GCTCAC-GGGAATCAAGAGCAAAGAGATTTTGATTTGGGTTACGATCTCTGAGATCTTTG 361 ||| || |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GCTTACTGGGA-TCAAAAGCAAAGAGATTTTGATTTGGGTTACGATCTCTGAGATCTTTG 358 Query 362 TTAATCATCAAGATCCGACTCA-AATCACTTTTGCTAATCCTACGGGACTATCACGTACT 420 ||||| |||||||||||||| | |||||||||||||||||||||||| || ||||||||| Sbjct 359 TTAATGATCAAGATCCGACT-ATAATCACTTTTGCTAATCCTACGGGTCTGTCACGTACT 417 Query 421 TTCCCCGTCACTGCTTTTGAAGAAGACGAATGATTC--ATTT-GTCAACGCTCACCATCA 477 ||||||||||||||||||||||||||| | ||||| |||| ||||||||||| ||| | Sbjct 418 TTCCCCGTCACTGCTTTTGAAGAAGACCAGTGATTTTGATTTTGTCAACGCTCATCATTA 477 Query 478 TGATACTTTGCTTAGCTAAATTATCTTT-TGTT-TTTTC--CTTATAATTCCTTTTGTTT 533 |||||||||||||||||||||||||||| | || |||| ||||||||||||||||||| Sbjct 478 TGATACTTTGCTTAGCTAAATTATCTTTCTTTTCTTTTTTTCTTATAATTCCTTTTGTTT 537 Query 534 AGCTAAGTTCTATT-TTCAACAT 555 ||||||||||| || |||||||| Sbjct 538 AGCTAAGTTCT-TTCTTCAACAT 559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22149414777 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5