BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46240.1
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494350 jgi|Araly1|494350|fgenesh2_kg.8__166__AT5G46240.1 3517 0.0
Ahg329707 jgi|Araly1|329707|fgenesh1_pm.C_scaffold_7001934 1578 0.0
> Ahg494350 jgi|Araly1|494350|fgenesh2_kg.8__166__AT5G46240.1
Length=2262
Score = 3517 bits (1904), Expect = 0.0
Identities = 2132/2244 (95%), Gaps = 7/2244 (0%)
Strand=Plus/Plus
Query 1 ATAACAAATGGGTCACAACAAGTTGCCATAAAGGTCCCAACAGAAGAAGAAAAGAGAAGT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATAACAAATGGGTCACAACAAGTTGCTATAAAGGTCCCAACAGAAGAAGAAAAGAGAAGT 60
Query 61 TTCCCCGTGTTGCTTTGTCACAAGCTTCATCACTATTTATAACTACCTTGCCAAGAAGAA 120
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCCCGTGTCAATTTGTCACAAGCTTCATCACTATTTATAACTACCTTGCCAAGAAGAT 120
Query 121 AGCCTAAAAAGGTATAACAGTTTCTTTGTCTTTAGAGATCATCAAAAAGATGTCGATCTC 180
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 121 AGCCTAAAAAGGTATAACAGTTTCTTTGTCTATAGCGATCATCAAAAAGATGTCGATCTC 180
Query 181 TTGGACTCGAAATTTCTTCGAAAGATTCTGCGTCGAGGAATACAATATAGACACCATAAA 240
| | || |||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TCGTACCCGAAATTTCTTCCAAAGATTCTGTGTCGAGGAATACAATATAGACACCATAAA 240
Query 241 ACAGAGTAGTTTCCTCTCTGCCGATCTTCTACCATCTCTTGGAGCCAGGATCAACCAATC 300
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 241 ACAGAGTAGTTTCCTCTCTGCCGATCTTCTACCATCTCTTGGAGCCAGAATTAACCAATC 300
Query 301 TACTAAGCTCCGCAAACACATAATCTCTCCTTTTAATCCACGTTACAGAGCGTGGGAGAT 360
|||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 301 TACTAAGCTCCGTAAACATATAATCTCTCCTTTTAATCCACGTTATAGAGCATGGGAGAT 360
Query 361 GTGGCTAGTATTACTAGTTATTTACTCAGCTTGGATTTGCCCATTTCAATTTGCTTTCAT 420
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGCTAGTCTTTCTAGTTATTTACTCAGCTTGGATTTGCCCATTTCAATTTGCTTTCAT 420
Query 421 CACCTATAAAAAAGACGCGATTTTCATCATCGACAACATTGTTAATGGCTTCTTCGCCAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 CACCTATAAAAAAGACGCGATTTTCATCATCGACAACATTGTTAATGGCTTCTTTGCCAT 480
Query 481 TGATATTATTCTCACCTTCTTCGTCGCTTATCTCGATAGCCACTCCTATCTTCTAGTTGA 540
|||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 481 AGATATTGTTCTCACCTTCTTTGTTGCGTATCTCGATAGCCACTCCTATCTTCTAGTTGA 540
Query 541 CAGTCCTAAGAAAATAGCAATAAGGTACCTTTCGACGTGGTTCGCTTTCGATGTTTGTTC 600
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 541 CAATCCTAAGAAAATAGCAATAAGGTACCTTTCGACATGGTTCGCTTTCGATGTGTGTTC 600
Query 601 CACAGCACCATTTCAGCCACTAAGCCTCTTGTTTAACTACAACGGAAGCGAACTAGGATT 660
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 601 CACAGCACCATTTCAGCCACTGAGCCTCTTGTTTAACTACAACGGAAGCGAACTAGAATT 660
Query 661 CAGAATTCTTAGCATGCTCAGGTTATGGCGTCTCCGGCGAGTTAGCTCGCTATTTGCAAG 720
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 661 CAGAATTCTTAGCATGCTCAGATTATGGCGTCTCCGTCGAGTTAGCTCGCTGTTTGCAAG 720
Query 721 GCTTGAGAAAGATATCCGTTTCAACTATTTCTGGATACGTTGCACAAAACTCATTTCGGT 780
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 721 GCTTGAGAAAGATATTCGTTTCAACTACTTCTGGATACGGTGCACAAAACTCATTTCGGT 780
Query 781 CACTTTGTTCGCTATACATTGTGCTGGATGTTTCAACTACCTGATTGCAGATAGATATCC 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CACTTTGTTCGCTGTACATTGTGCTGGATGTTTCAACTACCTGATTGCAGATAGATATCC 840
Query 841 TAATCCAAGAAAGACATGGATTGGAGCTGTGTATCCAAATTTCAAAGAAGCAAGTCTATG 900
||||||||||||||||||||| || || ||||||||| ||||||||||||||||||| ||
Sbjct 841 TAATCCAAGAAAGACATGGATCGGTGCCGTGTATCCAGATTTCAAAGAAGCAAGTCTCTG 900
Query 901 GAATAGATATGTGACTGCTCTTTACTGGTCCATTACGACATTAACGACCACGGGATATGG 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GACTAGATATGTGACTGCTCTTTACTGGTCCATTACGACATTAACGACCACGGGATATGG 960
Query 961 AGATTTTCATGCTGAGAACCCAAGAGAAATGCTTTTTGACATTTTCTTCATGATGTTCAA 1020
|||||| ||||||||||| ||||||||||||||||| ||||||||||| ||| | |||||
Sbjct 961 AGATTTACATGCTGAGAATCCAAGAGAAATGCTTTTCGACATTTTCTTTATGCTATTCAA 1020
Query 1021 CCTCGGTTTGACAGCTTACCTCATTGGAAATATGACCAACCTCGTCGTTCATTGGACTAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 CCTCGGTTTGACAGCTTACCTCATTGGAAATATGACCAACCTCGTCGTTCAGTGGACTAG 1080
Query 1081 CCGAACCAGAACCTTTAGGGATTCAGTGAGAGCTGCTTCAGAGTTTGCTTCAAGAAATCA 1140
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1081 CCGAACCAGAACCTTTAGGGATACAGTGAGAGCTGCTTCAGAGTTTGCTTCAAGAAATCA 1140
Query 1141 ACTCCCACATGACATACAAGATCAAATGTTATCACACATTTGCTTAAAGTTCAAAACAGA 1200
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACTCCCACATGACATACAAGACCAAATGTTATCACACATTTGCTTAAAGTTCAAAACAGA 1200
Query 1201 GGGCTTGAAACAACAAGAGACCTTGAACAATCTGCCAAAAGCAATCCGGTCAAGCATTGC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGGCTTGAAACAACAAGAGACCTTGAACAATCTGCCAAAAGCAATCCGGTCAAGCATTGC 1260
Query 1261 AAACTATTTATTCTTCCCCATTGTTCACAACATTTACCTCTTTCAAGGAGTTTCTCGTAA 1320
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AAACTACTTATTCTTCCCCATTGTTCACAACATTTACCTCTTTCAAGGAGTTTCTCGTAA 1320
Query 1321 CTTCCTCTTTCAATTGGTTTCAGATATAGACGCTGAGTATTTCCCACCAAAAGAAGATAT 1380
|||||| |||||||||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 1321 CTTCCTATTTCAATTGGTTTCCGACATAGACGCCGAGTATTTCCCACCTAAAGAAGATAT 1380
Query 1381 AATTCTACAAAACGAAGCTCCTACTGATCTTTACATTCTGGTGTCAGGAGCAGTGGACTT 1440
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1381 AATTCTACAAAACGAAGCTCCTACTGATCTTTACATTCTGGTTTCAGGAGCAGTGGACTT 1440
Query 1441 CAC-TGTCTACGTTGATGGACATGATCAGTTTCAAGGGAAAGCAGTAATTGGAGAAACAT 1499
||| || |||||||||||||||||||||| |||||||||||||||| |||||||| || |
Sbjct 1441 CACATG-CTACGTTGATGGACATGATCAGATTCAAGGGAAAGCAGTTATTGGAGATACGT 1499
Query 1500 TTGGAGAGGTTGGAGTTTTATACTATAGACCACAACCATTCACAGTAAGAACAACCGAGC 1559
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1500 TTGGAGAGGTTGGAGTTTTATGCTATAGACCACAACCATTCACAGTAAGAACAGCCGAGC 1559
Query 1560 TATCTCAAATACTGCGGATAAGCAGAACATCGCTGATGAGTGCGATGCATGCTCATGCTG 1619
||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1560 TATCTCAAATACTACGGATAAGCAGAACATCGCTGATGAGCGCAATGCACACTCATGCTG 1619
Query 1620 ACGATGGACGAGTCATCATGAACAATCTCTTCATGAAACTTAGAGGGCAACAGTCAATAG 1679
||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1620 ACGATGGACGAATTATAATGAACAATCTATTCATGAAACTTAGAGGGCAACAGTCAATAG 1679
Query 1680 CAATAGATGATTCGAATACTAGTGGTCACGAAAACAGAGATTTCAAAAGCATGGGATGGG 1739
|||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||
Sbjct 1680 CAATAGATGATTCGAATA---GTGGTCAAGAAAACAGAGATTTTAAAAGCATGGTATGGG 1736
Query 1740 AAGAGTGGAGAGATTCAAGAAAAGATGGCTATGGTTTAGATGTTACGAATCCGACTTCCG 1799
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 1737 AAGAGTGGAGAGATTCAAGAAAAGATGGCTACGGTTTAGATGTGACGAATCCGACCTCCG 1796
Query 1800 ACACTGCTCTAATGGATGCGATTCACAAGGAAGATACTGAAATGGTTAAGAAGATACTTA 1859
| | ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||
Sbjct 1797 ATAATGCTCTAATGGATGCAATTCACAAGGGAGATACTGAATTGGTTAAGAAGATACTTA 1856
Query 1860 AGGAACAAAAGATAGAGAGAGCCAAAGTGGAAAGATCAAGTAGTGAAACCGCTGGAAGAA 1919
| ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1857 AAGAACAAAAGTTAGAGAGAGCCAAAGAGGAAAGATCAAATAGTGAAACCGCTGGAAGAG 1916
Query 1920 GTTACGCTAACGATTCATCGAAAAAAGATCCATATTGCAGCTCAAGCAACCAAATCATCA 1979
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 GTTACGCAAACGATTCACCGAAAAAAGATCCATATTGCAGCTCAAGCAACCAAATCATCA 1976
Query 1980 AGCCATGCAAACGAGAAGAAAAGAGAGTTACCATCCACATGATGTCTGAGAGCAAGAACG 2039
||||||| ||| ||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 1977 AGCCATGTAAAAGAGAAGATAAGAGAGTTACCATCCACATGATGTCAGAGCGCAAGAACG 2036
Query 2040 GGAAGTTGATACTCTTACCATCATCCAT-AGAAGAGCTTCTAAGACTTGCAAGTGAGAAG 2098
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 2037 GGAAGTTGATACTCTTACCATCATCCATTA-AAGAGCTTCTAAGACTTGCAAGTGAAAAG 2095
Query 2099 TTTGGAGGCTGCAACTTCACAAAGATCACCAATGCGGACAACGCTGAGATTGATGATTTA 2158
||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2096 TTTGGAGGCTGCAGCTTCACAAAGATAACCAATGCGGACAACGCCGAGATTGATGATTTA 2155
Query 2159 GATGTCATTTGGGATGGTGATCATTTGTATTTTTCATCAAATTGAGTTTGAAAACTCGAC 2218
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 GATGTGATTTGGGATGGTGATCATTTGTATTTTTCATCAAATTGAGTTTGAAAACTCGAC 2215
Query 2219 TTCATTTATAGAGCATGTATATCT 2242
||||||||||||||||| ||||||
Sbjct 2216 TTCATTTATAGAGCATGAATATCT 2239
> Ahg329707 jgi|Araly1|329707|fgenesh1_pm.C_scaffold_7001934
Length=2106
Score = 1578 bits (854), Expect = 0.0
Identities = 1317/1540 (86%), Gaps = 34/1540 (2%)
Strand=Plus/Plus
Query 176 ATCTCTTGGACTCGAAATTTCTTCGAAA-GATTCTGCGTCGAGGAATACAATATAGACAC 234
|||||| | ||| |||| |||||| ||| ||||||||||||| ||||||||||| || |
Sbjct 7 ATCTCTAGTACTAGAAACTTCTTC-AAACGATTCTGCGTCGAAGAATACAATATGGATA- 64
Query 235 CA-TAAAACAGAGTAGTTTCCTCTCTGCCGATCTTC-TACCATCTCTTGGAGCCAGGATC 292
|| | ||||| ||||||||||||||||| |||| || |||||||||||||||| || ||
Sbjct 65 CATTCAAACACAGTAGTTTCCTCTCTGCTGATC-TCTTACCATCTCTTGGAGCTAGAATA 123
Query 293 AACCAATCTACTAAGCTCCGCAAACACATAATCTCTCCTTTTAATCCACGTTACAGAGCG 352
|||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||| ||
Sbjct 124 AACCAATCAACTAAGCTCCGCAAACACATCATCTCTCCTTTCGATCCACGTTTCAGGGCA 183
Query 353 TGGGAGATGTGGCTAGT-ATTACTAGTTATTTACTCAGCTTGGATTTGCCCATTTCAATT 411
|||||||||||||| || ||| || || |||||||| ||||||||||| || ||| | ||
Sbjct 184 TGGGAGATGTGGCTGGTCATT-CTTGTGATTTACTCGGCTTGGATTTGTCCTTTTGAGTT 242
Query 412 TGCTTTCATCACCTATAAAAAAGACGCGATTTTCATCATCGACAACATTGTTAATGGCTT 471
||| ||||||||||| || ||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 243 TGCCTTCATCACCTACAAGAAAGACGCGCTTTTCATCATTGACAACATTGTCAATGGCTT 302
Query 472 CTTCGCCATTGATATTATTCTCACCTTCTTCGTCGCTTATCTCGATAGCCACTCCTATCT 531
||| ||||||||||| ||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 303 CTTTGCCATTGATATCATTCTCACCTTCTTCGTTGCTTATCTTGACAGCCACTCTTATCT 362
Query 532 TCTAGTTGACAGTCCTAAGAAAATAGCAATAAGGTACCTTTCGACGTGGTTCG-CTTTCG 590
|||||| || | |||||||||||||| |||||||||||||| || ||||||| |||| |
Sbjct 363 TCTAGTCGATAAACCTAAGAAAATAGCTATAAGGTACCTTTCTACTTGGTTCGCCTTT-G 421
Query 591 ATGTTTGTTCCACAGCACCATTTCAGCCACTAAG-CCTCTTGTTTAACTACAACGGAAGC 649
|||| || || ||||| ||||| ||| |||| || | || |||| || ||||||||||||
Sbjct 422 ATGTCTGCTCAACAGCTCCATTCCAGTCACTGAGTCTTC-TGTTCAATTACAACGGAAGC 480
Query 650 GAACTAGGATTCAGAATTCTTAGCATGCTCAGGTTATGGCGTCTCCGGCGAGTTAGCTCG 709
||| ||||||||||| ||||||| ||||||||| | |||||||| | |||||||||||
Sbjct 481 GAAATAGGATTCAGAGTTCTTAGTATGCTCAGGCTCTGGCGTCTTAGACGAGTTAGCTCC 540
Query 710 CTATTTGCAAGGCTTGAGAAAGATATCCGTTTCAACTATTTCTGGATACGTTGCACAAAA 769
|| |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 541 CTGTTTGCAAGGCTTGAGAAAGATATCCGCTTCAACTATTTCTGGACACGCTGCACAAAA 600
Query 770 CTCATTTCGGTCACTTTGTTCGCTA-TACATTGTGCTGGATGTTTCAACTACCTGATTGC 828
|||||||||||||| |||| || | |||||||||||||||| ||||||||||| |||||
Sbjct 601 CTCATTTCGGTCACACTGTTTGC-AGTACATTGTGCTGGATGCTTCAACTACCTCATTGC 659
Query 829 AGATAGATATCCTAATCCAAGAAAGACATGGATTGGAGCTGTGTATCCAAATTTCAAAGA 888
|||| |||||||| |||||| ||| ||||||||||||||||| || ||||||||| |||
Sbjct 660 AGATCGATATCCTGATCCAACAAAAACATGGATTGGAGCTGTCTACCCAAATTTC-AAGG 718
Query 889 AG-CAAGTC-TATGGAATAGATATGTGACTGCTCTTTACTGGTCCATTACGACATTAACG 946
|| |||| | |||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 719 AGACAAG-CGTATGGAGTAGATATGTTACTGCTCTTTACTGGTCAATTACGACATTAACA 777
Query 947 ACCACGGGATATGGAGATTTTCATGCTGAGAACCCAAGAGAAATGCTT-TT-TGACAT-T 1003
|| || || |||||||| || ||||| ||||| |||||||||||| || || | | |
Sbjct 778 ACTACAGGTTATGGAGACTTACATGCCGAGAATCCAAGAGAAATG-TTGTTCT-TTGTGT 835
Query 1004 TTCTTCATGATGTTCAACCTCGGTTTGACAGCTTACCTCATTGGAAATATGACCAACCTC 1063
|| |||||| | |||||||| ||||| ||| ||||||| ||||||||||||||||||||
Sbjct 836 TT-TTCATGCTCTTCAACCTGGGTTTTACATCTTACCTGATTGGAAATATGACCAACCTT 894
Query 1064 GTCGTTCATTGGACTAGCCGAACCAGAACCTTTAGGGATTCAGTGAGAGCTGCTTCAGAG 1123
|| ||||| ||||||||||| ||||||| |||||| ||| | || |||| |||||| |||
Sbjct 895 GTGGTTCACTGGACTAGCCGCACCAGAAACTTTAGAGATACTGTAAGAGTTGCTTCGGAG 954
Query 1124 TTTGCTTCAAGAAATCAACTCCCA-CATGACATACAAGATCAAATGTTATCACACATTTG 1182
||||| |||||||| ||||| ||| || |||||||||| ||||||||||||||||||||
Sbjct 955 TTTGCATCAAGAAACCAACTTCCACCA-AACATACAAGACCAAATGTTATCACACATTTG 1013
Query 1183 CTTAAAGTTCAAAACAGAGGG-CTTGAAACAACAAGAGACCTTGAACAATCTGCCAAAAG 1241
||||||||||||||||||||| || |||||||||||| ||||||||| | |||| ||||
Sbjct 1014 CTTAAAGTTCAAAACAGAGGGTCT-GAAACAACAAGAAACCTTGAACGGTTTGCCGAAAG 1072
Query 1242 CAATCCGGTCAAGCATTGCAAACTATTTATTCTTCCCCATTGTTCACAACATTTACCTCT 1301
|||| ||||||||||||||||||||| | |||||||| || ||||| ||| | |||||||
Sbjct 1073 CAATTCGGTCAAGCATTGCAAACTATCTCTTCTTCCCAATCGTTCAGAACGTCTACCTCT 1132
Query 1302 TTCAAGGAGTTTCTCGTAACTTCCTCTTTCAATTGGTTTCAGATATAGACGCTGAGTATT 1361
|||| |||||||||| |||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 1133 TTCAGGGAGTTTCTCACAACTTCCTATTTCAGTTGGTTTCAGATATAGACGCCGAATATT 1192
Query 1362 TCCCACCAAAAGAAGATATAATTCTACAAAACGAAGCTCCTACTGATCTTTACATTCTGG 1421
||||||||| ||||||| |||| ||||| ||||||||||||||||| |||||| |||| |
Sbjct 1193 TCCCACCAAGAGAAGATGTAATACTACAGAACGAAGCTCCTACTGACCTTTACGTTCTAG 1252
Query 1422 TGTCAGGAGCAGTGGACTTCACTGTCTACGTTGATGGACATGATCAGTTTCAAGGGAAAG 1481
| ||||| |||||||| || |||||||| |||| | | | |||||| ||||||| || |
Sbjct 1253 TCTCAGGGGCAGTGGATTTTACTGTCTATGTTGGCGAAGAAGATCAGGTTCAAGGCAAGG 1312
Query 1482 CAGTAATTGGAGAAACATTTGGAGAGGTTGGAGTTTTATACTATAGACCACAACCATTCA 1541
| || |||| || ||||||||||| |||| || |||| ||||| ||||||||| ||||
Sbjct 1313 CGGTTGTTGGCGATGCATTTGGAGAGATTGGTGTGTTATGCTATACACCACAACCTTTCA 1372
Query 1542 CAGTAAGAACAACCGAGCTATCTCAAATACTGCGGATAAGCA-GAACATCGCTGATGAGT 1600
|||| || ||||| || || ||||| ||||| || ||||||| ||| ||| || ||||||
Sbjct 1373 CAGTTAGGACAACTGAACTTTCTCAGATACTACGCATAAGCAAGAA-ATCTCTAATGAGT 1431
Query 1601 GCGATGC-ATGCTCATG-CTGACGATGGACGAGTCATCATGAACAATCTCTTCATGAAAC 1658
|| |||| | |||||| | || |||||||| ||||| |||||||| |||||||||||||
Sbjct 1432 GCTATGCGA-GCTCATATC-GAAGATGGACGTGTCATAATGAACAACCTCTTCATGAAAC 1489
Query 1659 TTAGAGGGCAACAGTCAATAGCAATAGATGATTCGAATAC 1698
||||||||||||||||||||||||| |||||| | |||||
Sbjct 1490 TTAGAGGGCAACAGTCAATAGCAATTGATGATCCAAATAC 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86198224435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5