BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46250.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915450 jgi|Araly1|915450|Al_scaffold_0008_201 1812 0.0
> Ahg915450 jgi|Araly1|915450|Al_scaffold_0008_201
Length=1299
Score = 1812 bits (981), Expect = 0.0
Identities = 1204/1305 (92%), Gaps = 42/1305 (3%)
Strand=Plus/Plus
Query 78 ATGTCTTCTCTTCCTCTTCGCTCCGGTGAGAAGATGG-AATCGCCTTCCATCTCCGACGC 136
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 1 ATGTCTTCTCTTCCTCTTCGCTCCGGTGAGAAGATGGCAA-CCCCTTCCATCTCCGACGC 59
Query 137 CGTTCCACTTCACGCACCAGAAGACGCGACCGCGGATTTTTCCCAACCGCAATCGCCGTT 196
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGTTCCACTTCAGGCACCAGAAGACGCGACCGCGGATTTTTCCCAACCGCAATCGCCGTC 119
Query 197 ACATGAAGTTGATTCGTTTCCAGTTACTGAATC--C-TCCGATGATGTTGTTGTTAACGT 253
|| ||| ||||||||||| |||||| ||||||| | |||||||||||||||||| | ||
Sbjct 120 ACTTGATGTTGATTCGTTACCAGTTGCTGAATCTTCTTCCGATGATGTTGTTGTTGATGT 179
Query 254 CTCGGAGATACCGAATTTATCTCCGTCTGATGATGA-TTTTGACCACGAGCGAAATAGCG 312
||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||| |
Sbjct 180 CTCGGAGATACCGTCTTTATCTCCGTCGGATGATGACTTTT-ACCACGAGCGAAATAGTG 238
Query 313 GCGAGGATCGCGATCAGGATCACGGCGAGAATCCGGTTGAGACCGATGGTGTTGTTGTTC 372
||||||||||||||||||||||||||||||||| ||||||||||| | || || |||||
Sbjct 239 GCGAGGATCGCGATCAGGATCACGGCGAGAATCTTGTTGAGACCGACGATGCTGCTGTTC 298
Query 373 CAATCGATGAGTTGAATCAGAAGATCATTAGACAGGTTGAATACTACTTTAGTGACGAGA 432
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CAATCGATGTGTTGAAGCAGAAGATCATTAGACAGGTTGAATACTACTTTAGTGACGAGA 358
Query 433 ATTTGCCTACTGACAAATTTCTTCTGAATGCAATGAAGAGAAACAAAAAAGGCTTTGTTC 492
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 ATTTGCCTACTGACAAATTTCTTCTGAATGCTATGAAGAGAAACAAAAAAGGCTTTGTTC 418
Query 493 CTATTTCTACCATTGCTACGTTCCACAAAATGAAGAAGCTTACTCGAGATCATGCTTTGA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTATTTCTACCATTGCTACGTTCCACAAAATGAAGAAGCTTACTCGAGATCATGCTTTGA 478
Query 553 TAGTATCAGCCTTAAAGGAGTCATCGTTTCTTGTTGTTAGCGCTGATGAGAAGAAGGTGA 612
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 TAGTATCAGCCTTAAAGGAGTCATCGTTTCTTGTTGTTAGCTCTGATGAGAAGAAGGTGA 538
Query 613 AGCGGCTGAGTCCTCTTCCTGAGATCAGAGATCCAAAGATTTTCACTGTTTTGGTAGAAA 672
||||||||||||||||||||||| | || ||||||||||||||||||||||| |||||||
Sbjct 539 AGCGGCTGAGTCCTCTTCCTGAGGTTAGGGATCCAAAGATTTTCACTGTTTTAGTAGAAA 598
Query 673 ATTTGCCAGAGGATCATTCAAATGAGAATATTCGAGAGATATTTGGTAAAGCTGGAAGTA 732
|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
Sbjct 599 ATTTGCCAGAGGATCATTCAGACGAGAATATTCGGGAGATATTTGGTAAAGCTGGAAGCA 658
Query 733 TTAAAAGTGTATCCATATGTGATCCAAATGCTGTTGAAGAATCAGAGAAGGGTGGGAAGA 792
| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 659 TAAAAAGTGTATCCATATGTGATCCAAATGCTGCTGAAGAACCAGAGAAGGGTGCTAAGA 718
Query 793 AGGAAAATTTCATCAGAACCAGATTACATGCCTTTGTGGAGTATGAAACGGTGGAGGCAG 852
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 AGGAAAAATTCATCAGAACCAGATTACATGCCTTTGTGGAATATGAAACGGTGGAGGCAG 778
Query 853 CTGAAAAAGCGGCAGCTACATTGAATAATGAGCAAGACTGGAGAAATGGGTTGCGAGTTA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTGAAAAAGCGGCAGCTACATTGAATAATGAGCAAGACTGGAGAAATGGGTTGCGAGTTA 838
Query 913 AGCTTCTTGAACAAGCAGCAGGAAAGTTTGCACAGAGAAGACCAGCTCGGAGGGAAGTCG 972
|||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 839 AGCTTCTTGAACAA--A-CAGGAAAGTTTGCACAGAGAAGACCAGCTAGGAGAGAAGTCG 895
Query 973 ATAAAGAAAAGGACACTACAGGCAGAGTTCATGATCAAACTGGAGGAGAGAAAAACAAAA 1032
||||||||||||| | ||||||| |||||||||||||||||| ||||||||| |||||||
Sbjct 896 ATAAAGAAAAGGATAATACAGGCCGAGTTCATGATCAAACTGAAGGAGAGAAGAACAAAA 955
Query 1033 AGACGCGTGAACATCAA-AATCACCGTCTCCATCATTCTGATAATCCTGCTGATGATG-A 1090
|||||||||||||||| || ||||||| |||||||||||||||| |||||||||||| |
Sbjct 956 AGACGCGTGAACATCAGCAA-CACCGTCACCATCATTCTGATAATACTGCTGATGATGTA 1014
Query 1091 ----C-------G--G-TGGCAATCATCAGAAGGATAAAAATGGAAACAAAGGCAGAGTT 1136
| | | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1015 AGTTCCATCTTAGATGGTGGCAATCATCAGAAGGATAAAAATGGAAACAAAGGCAGAGGT 1074
Query 1137 GTAGGACAAGGAAGACGACAGAATCATCAAGGCGGCAACGGCATTGGACATGGAACA--- 1193
| |||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1075 GGAGGACAAGGAAGGCGACAGCATCATCAAGGCGGCAGCGGTATTGGACATGGAACACCA 1134
Query 1194 ------GCTTCATCATCTTCTCATCCTAATTATCATCCTGTTGAGGTCTCAAAGCGTCCA 1247
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1135 CCATCAGCTTCATCATCTTCTCATCATAATTATCATCCTGTTGAGGTCTCAAAGCGTCCA 1194
Query 1248 CCTGGCCCGAGAATGCCTGATGGGACGAGAGGGTTCACAATGGGGCGTGGTAAAGCGATT 1307
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1195 CCTGGCCCGAAAATGCCTGATGGGACGAGGGGGTTCACAATGGGGCGTGGTAAAGCGATT 1254
Query 1308 CCTCCTCC-C-----ACATCTACTCAAACCAGTCATGAAGTTTGA 1346
|||||||| | |||||| |||||||||||||||||||||||
Sbjct 1255 CCTCCTCCTCCTCTCACATCTGCTCAAACCAGTCATGAAGTTTGA 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5