BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46290.3
Length=1936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494344 jgi|Araly1|494344|fgenesh2_kg.8__160__AT5G46290.1 2287 0.0
Ahg934005 jgi|Araly1|934005|scaffold_401993.1 158 2e-37
> Ahg494344 jgi|Araly1|494344|fgenesh2_kg.8__160__AT5G46290.1
Length=1817
Score = 2287 bits (1238), Expect = 0.0
Identities = 1338/1385 (97%), Gaps = 12/1385 (1%)
Strand=Plus/Plus
Query 21 TTTCGCAAAACACACATCACACACCATTTTCACAACATCGTACTTATCGCCTTCctctct 80
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 TTTCGCAAAACACACATCACACACCATTTTCACAACATCGTACTTATCGCCTT-C-CTCT 58
Query 81 ctctcaatacctc--tctcAATTTCTGGATCCACCATGCAAGCTCTTCAATCTTCATCTC 138
|||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 59 CTCTCAAT--CTCAATCTCAATTTCTGGATCCACCATGCAAGCTCTTCAGTCTTCATCTC 116
Query 139 TCCGTGCTTCTCCTCCAAACCCACTTCGCTTACCATCAAATCGTCAATCACATCAGCTAA 198
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 117 TCCGTGCTTCTCCACCAAACCCACTTCGCTTACCATCAAATCGTCAATCACATCAGATAA 176
Query 199 T---TACCAATGCGAGACCTTTGCGAAGACAACAACGTTCCTTCATCTCCGCATCAGCAT 255
| |||||||||||||||||| |||||| || || ||||||||||||||||||||||
Sbjct 177 TCACCACCAATGCGAGACCTTTGAGAAGAC-AC--CGCTCCTTCATCTCCGCATCAGCAT 233
Query 256 CCACTGTCTCCGCTCCTAAACGCGAAACAGATCCGAAGAAACGAGTTGTCATTACTGGTA 315
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CCACTGTTTCCGCTCCTAAACGCGAAACAGATCCGAAGAAACGAGTTGTCATTACTGGTA 293
Query 316 TGGGTCTCGTCTCTGTGTTTGGTAACGATGTTGATGCTTACTACGAGAAATTGTTGTCTG 375
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 294 TGGGTCTCGTCTCTGTGTTTGGTAACGATGTTGATGCTTACTACGACAAACTCTTGTCTG 353
Query 376 GTGAGAGTGGAATCAGTTTGATTGATCGTTTCGATGCTTCCAAGTTCCCTACTCGATTCG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTGAGAGTGGAATCAGTTTGATTGATCGTTTCGATGCTTCCAAGTTCCCTACTCGATTCG 413
Query 436 GTGGTCAGATCCGTGGGTTTAGCTCTGAAGGTTATATTGATGGCAAGAATGAGCGTAGGC 495
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 414 GTGGTCAGATCCGTGGCTTTAGCTCTGAAGGTTATATTGATGGCAAAAATGAGCGTAGGC 473
Query 496 TTGATGATTGTTTGAAATATTGCATTGTTGCTGGTAAAAAAGCTCTTGAAAGTGCCAATC 555
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTGATGATTGTTTGAAGTATTGCATTGTTGCTGGTAAAAAAGCTCTTGAAAGTGCCAATC 533
Query 556 TTGGTGGTGATAAGCTTAACACGATTGATAAGAGGAAAGCTGGAGTACTAGTTGGGACTG 615
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTGGTGGTGATAAACTTAACACGATTGATAAGAGGAAAGCTGGAGTACTAGTTGGGACTG 593
Query 616 GAATGGGAGGTTTAACTGTGTTTTCAGAAGGTGTTCAGAATTTGATTGAGAAGGGTCATA 675
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 594 GAATGGGAGGTTTAACTGTGTTTTCAGAAGGAGTTCAGAATTTGATTGAGAAGGGTCATA 653
Query 676 GGAGGATTAGTCCATTTTTTATACCTTATGCTATAACAAATATGGGTTCTGCTTTGTTGG 735
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 654 GGAGGATTAGTCCATTTTTTATACCTTATGCTATAACAAACATGGGTTCTGCTTTGTTGG 713
Query 736 CGATTGATCTTGGTCTTATGGGTCCTAACTATTCGATTTCAACTGCTTGTGCTACTTCGA 795
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 714 CGATTGATCTTGGTCTTATGGGTCCTAACTACTCGATTTCTACTGCTTGTGCTACTTCGA 773
Query 796 ATTACTGCTTTTACGCTGCTGCGAATCACATTCGTCGTGGTGAAGCTGATATGATGATTG 855
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 774 ATTACTGTTTTTACGCTGCTGCGAACCACATTCGTCGTGGTGAAGCTGATATGATGATTG 833
Query 856 CTGGTGGGACTGAGGCTGCTATTATTCCTATTGGGTTGGGAGGTTTTGTTGCTTGTAGGG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTGGTGGGACTGAGGCTGCTATTATTCCTATTGGGTTGGGAGGTTTTGTTGCTTGTAGGG 893
Query 916 CATTGTCCCAGAGAAATGATGACCCTCAAACTGCTTCCAGGCCGTGGGATAAAGCAAGAG 975
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 894 CATTGTCTCAGAGGAATGATGACCCTCAAACTGCTTCGAGGCCGTGGGATAAAGCAAGAG 953
Query 976 ATGGGTTTGTTATGGGTGAAGGAGCTGGTGTTCTGGTGATGGAAAGCTTGGAACATGCAA 1035
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 954 ATGGCTTTGTTATGGGCGAAGGAGCTGGTGTTCTGGTGATGGAAAGTTTGGAACATGCGA 1013
Query 1036 TGAAACGTGGTGCTCCAATTGTAGCAGAATATCTTGGAGGTGCTGTTAATTGTGATGCTC 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGAAACGTGGTGCTCCAATTGTAGCAGAATATCTTGGAGGTGCTGTTAATTGTGATGCTC 1073
Query 1096 ACCATATGACTGATCCAAGAGCTGATGGTCTTGGGGTTTCTTCATGCATTGAAAGATGCC 1155
|||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||
Sbjct 1074 ACCATATGACTGATCCAAGAGCTGATGGGCTTGGTGTCTCTTCATGCATTGAGAGATGCC 1133
Query 1156 TGGAAGATGCTGGTGTATCACCTGAGGAGGTAAATTACATCAATGCACATGCAACTTCCA 1215
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1134 TTGAAGATGCTGGTGTATCACCTGAGGAGGTAAATTACATCAATGCACATGCAACATCCA 1193
Query 1216 CTCTTGCTGGTGATCTTGCTGAGATTAATGCCATTAAAAAGGTATTCAAGAGCACTTCAG 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CTCTTGCTGGTGATCTTGCTGAGATTAATGCCATTAAAAAGGTATTCAAGAGCACTTCAG 1253
Query 1276 GGATCAAAATCAACGCCACCAAGTCTATGATAGGTCACTGCCTCGGTGCAGCTGGAGGTC 1335
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GGATCAAAATCAATGCCACCAAGTCTATGATAGGTCACTGCCTCGGTGCAGCTGGAGGTC 1313
Query 1336 TAGAAGCCATCGCCACCGTGAAGGCTATCAACACTGGATGGCTGCATCCTTCCATCAACC 1395
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1314 TAGAAGCCATCGCCACCGTGAAGGCTATTAACACTGGATGGCTGCATCCTTCCATCAACC 1373
Query 1396 AATTT 1400
|||||
Sbjct 1374 AATTT 1378
Score = 645 bits (349), Expect = 0.0
Identities = 414/442 (94%), Gaps = 18/442 (4%)
Strand=Plus/Plus
Query 1449 AACCCAGAACAAGCTGTGGACTTTGACACGGTCCCAAACGAGAAGAAGCAACACGAGGTT 1508
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1379 AACCCAGAACAAGCTGTGGACTTTGACACGGTCCCAAACGAGAAGAAGCAGCACGAAGTT 1438
Query 1509 GATGTTGCCATATCAAACTCGTTCGGGTTCGGTGGACACAACTCGGTAGTCGCCTTCTCT 1568
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1439 GATGTTGCCATATCAAACTCGTTCGGGTTCGGTGGACACAACTCAGTCGTCGCCTTCTCT 1498
Query 1569 GCCTTCAAACCCTGATTTCTTCATACCTTTTAGATTCTCTGC-CCTATCGGTTACTATCA 1627
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||
Sbjct 1499 GCCTTCAAACCCTGATTTCTTCATACCTTTTAGATTCTCTGCTCC-ATCCGTTAC-ATCA 1556
Query 1628 TCATCCATCACCACCACTTGCAGCTTCTTGGTT-CACAAGTTGGAGCTCTTCCTCTGGCC 1686
|| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1557 TC--C-ATCACCACCACTTGCAGCTTCTTGGTTTCACAAGTTTAAGCTCTTCCTCTGGCC 1613
Query 1687 TTTTGCGGTTCTT-T----C-ATTCCCCGTTTC-TTACGGTTGCTGAGATTTCAGATTTT 1739
||||||||||||| | | ||||||||||| |||| |||||||||||||||||||||
Sbjct 1614 TTTTGCGGTTCTTATTTTTCCATTCCCCGTTTTGTTACTGTTGCTGAGATTTCAGATTTT 1673
Query 1740 GTTTGTTCTCTCTCTTGTCTGCGGAATGTTGTGTATCTTAGTTCGTTCCATATTTGCGTA 1799
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1674 GTTTGTTCTCTCTCTTGTCTGCGGAATGTT-TGTATCTTAGTTCGTTCCATATTTGCGTA 1732
Query 1800 ATTTATAAAAACAGAAA-CTGAGAGAATCTTGTAGTAACGGTGTTATTGTCAGAATAATC 1858
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1733 ATTTATAAAA-CAGAAAACTGAGAGAATCTTGTAGTAACGGTGTTAGTGTCAGAATAATC 1791
Query 1859 CAA-TTAGGGGATTCTCATCTT 1879
||| ||||||||||||||||||
Sbjct 1792 CAAATTAGGGGATTCTCATCTT 1813
> Ahg934005 jgi|Araly1|934005|scaffold_401993.1
Length=208
Score = 158 bits (85), Expect = 2e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 1010 GGTGATGGAAAGCTTGGAACATGCAATGAAACGTGGTGCTCCAATTGTAGCAGAATATCT 1069
|||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||
Sbjct 73 GGTGATGGAAAGCTTGGAACATGCGATGAGACGTGGTACTCTAATTGTAGCAGAATATCT 132
Query 1070 TGGAGGTGCTGTTAATTGTGATGCTCACCATATGACT 1106
|||||||||||||||||||||||||||||||||||||
Sbjct 133 TGGAGGTGCTGTTAATTGTGATGCTCACCATATGACT 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72752367950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5