BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46295.1
Length=410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494342 jgi|Araly1|494342|fgenesh2_kg.8__158__AT5G46295.1 401 2e-111
> Ahg494342 jgi|Araly1|494342|fgenesh2_kg.8__158__AT5G46295.1
Length=302
Score = 401 bits (217), Expect = 2e-111
Identities = 259/279 (93%), Gaps = 4/279 (1%)
Strand=Plus/Plus
Query 48 TACATTTTGGTTTTTGAAGCAGCTC-AAAATTTTGAGAAGATGATGAGAAAAGGGAAGCT 106
||||||| | |||| |||||||||| |||||| | ||||||||||||||||||||||| |
Sbjct 27 TACATTTCGATTTTGGAAGCAGCTCAAAAATTGTAAGAAGATGATGAGAAAAGGGAAGTT 86
Query 107 TTCGATATGGAAGACGACTAAAGAAAGGACGAGATTGAAATTTTTGGGACTTGGAGGAGG 166
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 87 TTCTTTATGGAAGACGACGAAAGAAAGGACGAGATTGAAATTTTTGGGACTTGGA-G-GG 144
Query 167 GCTAAAGTGGAAGAGATTGAATCTGAAGATGACGTTTTTGGAAACTTTGAGATACAGAAT 226
| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 145 G-TAAAGTGGAAGAGATTGAATCTGAAGATGTCTTTTTTGGAAACTTTGAGATACAGAAT 203
Query 227 CATGTCTATCATCGAGGCTATGGTTTTGGTATCCAAGCTTGCTTTCTTCTTCCTCTGTTG 286
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 204 CATGTCTGTCATCGAAGCTATGGTTTTGGTATCTAAGCTTGCTTTCTTCTTCCTCTGTTG 263
Query 287 TGGTTGTAAATTCTAACAAAAGTTAGttttgattttttt 325
|||||||||||||||||||||||||||||| |||||||
Sbjct 264 TGGTTGTAAATTCTAACAAAAGTTAGTTTTTTTTTTTTT 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14728057354
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5