BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46300.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494341 jgi|Araly1|494341|fgenesh2_kg.8__157__AT5G46300.1 1000 0.0
> Ahg494341 jgi|Araly1|494341|fgenesh2_kg.8__157__AT5G46300.1
Length=793
Score = 1000 bits (541), Expect = 0.0
Identities = 712/791 (90%), Gaps = 26/791 (3%)
Strand=Plus/Plus
Query 1 AGACATAAAAGTTTCCACTCTTGTGTCTTCTTCATTCCAAGAAGAAATCAAGAAATGGAT 60
|||||||||||||||| ||| | |||||||| |||| || |||||||||||||||||||
Sbjct 1 AGACATAAAAGTTTCCTCTC-T-TGTCTTCTGAATTCTAACAAGAAATCAAGAAATGGAT 58
Query 61 CATGGAGAAATGAGCACTAAGGAAACTACCACTTTGAAGCTTATACCCGGGTACGAAAAT 120
||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||
Sbjct 59 CATGGAGAAATGAGCACCAAGGAAACTACGAATGTGAAGCTTATACCCGGGTACGAAAAT 118
Query 121 GTGATGGAGCTCGAGCAAAGAAGACAAGAGCTGAAGGCTGTCGAGAAGAGGATGGAAAAT 180
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 119 GTGATGGAGCTCGTGCAAAGAAGAGAAGAGATGAAGGCTGTCGAGAAGAGGATGAAAAAT 178
Query 181 GTTATTGGAGAAAAAGAGATTGACGATCTAAACTTGACAGAATTAATTGAGTTCGAGAAG 240
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 179 TTTATTGGAGAAAAAAAGATTGACGATCTAAACTTGAGAGAATTAATTGAGTTCGAGAAA 238
Query 241 AAGCTTGAAGATATCCAA-AGTCTACAGTTGAAGAAGTTGGAAAAGATTCCTTGGAAAGA 299
|||||||||| || || || | | | |||||| ||||||||||| || ||||||
Sbjct 239 AAGCTTGAAGCTA---AACAG-C--C---T-AAGAAGATGGAAAAGATTTGTTTGAAAGA 288
Query 300 CATGATACAGCCAGCCAAAGATCTTGTAGTTCTGAACGAATATGTCAAGTTTAAGATTGG 359
||||| | || | ||||||||||| || ||||||| |||| ||| || |||||||||||
Sbjct 289 CATGACAGAGGAAACCAAAGATCTTATAATTCTGAAAGAATTTGTAAACTTTAAGATTGG 348
Query 360 AGAAATGCAGGCTAGGATTTCCATG-CCTCAAAACGACGAATTTGATATTAAAATGGAAG 418
|||||||||| ||| |||||||| | |||||| |||||||||||||||||| ||||||||
Sbjct 349 AGAAATGCAGACTAAGATTTCCA-GTCCTCAAGACGACGAATTTGATATTATAATGGAAG 407
Query 419 TAGGAAAAAAGGAAGATTTGAAGGGTTTGAAAATGAGGATGAAAGTGTTCATTGGAGAAA 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TAGGAAAAAAGGAAGATGTGAAGGGTTTGAAAATGAGGATGAAAGTGTTCATTGGAGAAA 467
Query 479 AGGAGTCTGAAGACATACACTTGGAGGAATTGATTGAGTTCAGTAAAAAGCTTGAAGCTC 538
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 AGGAGTTTGAAGACATACACTTGGAGGAATTGATTGAGTTCAGTAGAAAGCTTGAAGCTC 527
Query 539 TTCACCCAAAGAGCGTGA----TG--CATTTGGACGACATGACAGAAGAAATTAAAGATA 592
|| ||||||||||||||| || |||||||||||||||| || ||||||||||||||
Sbjct 528 TTTACCCAAAGAGCGTGAAAGATGTGCATTTGGACGACATGAAAGGAGAAATTAAAGATA 587
Query 593 TATTCATTATGAAAGAAATTGTGAAGAAAATGATCGCGAAGAGGGATCCTAACTCGTCTA 652
|| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 588 TAATCATTATGAAAGAAATTGTAAAGAAAATGATCGCGAAGAGGGATCCTACCTCGTCTA 647
Query 653 AAACGATGATCATCCA-GAATTATTTTTAATTAGAAATTAGTAACATATAAATTCATTAT 711
|||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AAACGACGATCATCGACGA-TTATTTTTAATTAGAAATTAGTAACATATAAATTCATTAT 706
Query 712 CATGGATCATATATGATCACTTTGTCGCTTGTTTCTCCCATT-ACA-TATTTACAGAATA 769
| ||||||||||||||||||||| |||||||||||| | || | | |||||||||||||
Sbjct 707 CTTGGATCATATATGATCACTTTACCGCTTGTTTCTCTC-TTCAAAATATTTACAGAATA 765
Query 770 ATTTGGGATTA 780
|||||||||||
Sbjct 766 ATTTGGGATTA 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5