BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46300.1 Length=850 Score E Sequences producing significant alignments: (Bits) Value Ahg494341 jgi|Araly1|494341|fgenesh2_kg.8__157__AT5G46300.1 1000 0.0 > Ahg494341 jgi|Araly1|494341|fgenesh2_kg.8__157__AT5G46300.1 Length=793 Score = 1000 bits (541), Expect = 0.0 Identities = 712/791 (90%), Gaps = 26/791 (3%) Strand=Plus/Plus Query 1 AGACATAAAAGTTTCCACTCTTGTGTCTTCTTCATTCCAAGAAGAAATCAAGAAATGGAT 60 |||||||||||||||| ||| | |||||||| |||| || ||||||||||||||||||| Sbjct 1 AGACATAAAAGTTTCCTCTC-T-TGTCTTCTGAATTCTAACAAGAAATCAAGAAATGGAT 58 Query 61 CATGGAGAAATGAGCACTAAGGAAACTACCACTTTGAAGCTTATACCCGGGTACGAAAAT 120 ||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||| Sbjct 59 CATGGAGAAATGAGCACCAAGGAAACTACGAATGTGAAGCTTATACCCGGGTACGAAAAT 118 Query 121 GTGATGGAGCTCGAGCAAAGAAGACAAGAGCTGAAGGCTGTCGAGAAGAGGATGGAAAAT 180 ||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct 119 GTGATGGAGCTCGTGCAAAGAAGAGAAGAGATGAAGGCTGTCGAGAAGAGGATGAAAAAT 178 Query 181 GTTATTGGAGAAAAAGAGATTGACGATCTAAACTTGACAGAATTAATTGAGTTCGAGAAG 240 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 179 TTTATTGGAGAAAAAAAGATTGACGATCTAAACTTGAGAGAATTAATTGAGTTCGAGAAA 238 Query 241 AAGCTTGAAGATATCCAA-AGTCTACAGTTGAAGAAGTTGGAAAAGATTCCTTGGAAAGA 299 |||||||||| || || || | | | |||||| ||||||||||| || |||||| Sbjct 239 AAGCTTGAAGCTA---AACAG-C--C---T-AAGAAGATGGAAAAGATTTGTTTGAAAGA 288 Query 300 CATGATACAGCCAGCCAAAGATCTTGTAGTTCTGAACGAATATGTCAAGTTTAAGATTGG 359 ||||| | || | ||||||||||| || ||||||| |||| ||| || ||||||||||| Sbjct 289 CATGACAGAGGAAACCAAAGATCTTATAATTCTGAAAGAATTTGTAAACTTTAAGATTGG 348 Query 360 AGAAATGCAGGCTAGGATTTCCATG-CCTCAAAACGACGAATTTGATATTAAAATGGAAG 418 |||||||||| ||| |||||||| | |||||| |||||||||||||||||| |||||||| Sbjct 349 AGAAATGCAGACTAAGATTTCCA-GTCCTCAAGACGACGAATTTGATATTATAATGGAAG 407 Query 419 TAGGAAAAAAGGAAGATTTGAAGGGTTTGAAAATGAGGATGAAAGTGTTCATTGGAGAAA 478 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 408 TAGGAAAAAAGGAAGATGTGAAGGGTTTGAAAATGAGGATGAAAGTGTTCATTGGAGAAA 467 Query 479 AGGAGTCTGAAGACATACACTTGGAGGAATTGATTGAGTTCAGTAAAAAGCTTGAAGCTC 538 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 468 AGGAGTTTGAAGACATACACTTGGAGGAATTGATTGAGTTCAGTAGAAAGCTTGAAGCTC 527 Query 539 TTCACCCAAAGAGCGTGA----TG--CATTTGGACGACATGACAGAAGAAATTAAAGATA 592 || ||||||||||||||| || |||||||||||||||| || |||||||||||||| Sbjct 528 TTTACCCAAAGAGCGTGAAAGATGTGCATTTGGACGACATGAAAGGAGAAATTAAAGATA 587 Query 593 TATTCATTATGAAAGAAATTGTGAAGAAAATGATCGCGAAGAGGGATCCTAACTCGTCTA 652 || ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 588 TAATCATTATGAAAGAAATTGTAAAGAAAATGATCGCGAAGAGGGATCCTACCTCGTCTA 647 Query 653 AAACGATGATCATCCA-GAATTATTTTTAATTAGAAATTAGTAACATATAAATTCATTAT 711 |||||| ||||||| | || |||||||||||||||||||||||||||||||||||||||| Sbjct 648 AAACGACGATCATCGACGA-TTATTTTTAATTAGAAATTAGTAACATATAAATTCATTAT 706 Query 712 CATGGATCATATATGATCACTTTGTCGCTTGTTTCTCCCATT-ACA-TATTTACAGAATA 769 | ||||||||||||||||||||| |||||||||||| | || | | ||||||||||||| Sbjct 707 CTTGGATCATATATGATCACTTTACCGCTTGTTTCTCTC-TTCAAAATATTTACAGAATA 765 Query 770 ATTTGGGATTA 780 ||||||||||| Sbjct 766 ATTTGGGATTA 776 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31451406525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5