BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46310.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494340 jgi|Araly1|494340|fgenesh2_kg.8__156__AT5G46310.1 883 0.0
Ahg943377 jgi|Araly1|943377|scaffold_603921.1 239 4e-62
> Ahg494340 jgi|Araly1|494340|fgenesh2_kg.8__156__AT5G46310.1
Length=1092
Score = 883 bits (478), Expect = 0.0
Identities = 947/1156 (82%), Gaps = 101/1156 (9%)
Strand=Plus/Plus
Query 1 ATGGTTAGGGTTCCACCTTTTAAACCCTCC-AAA-----GAAG--G-TGATCCAAAGTTG 51
||||||||||||||||||| |||||||||| ||| |||| | ||||||||||||
Sbjct 1 ATGGTTAGGGTTCCACCTTCTAAACCCTCCAAAACCGTCGAAGAAGATGATCCAAAGTTA 60
Query 52 GAAACTTTCAAGG-A--TAATCTTGATTCCATAGTCAGGTTTGGGATTGGCGAAGAACTC 108
||||||||||||| | ||||||||||||||| | | | | |||| |||| | |
Sbjct 61 GAAACTTTCAAGGAACCTAATCTTGATTCCATCGACTCG--T-CCTTTGG-GAAG--CGC 114
Query 109 AGAGTGAGCTCCACACCTCTTGATGCTATGGAGCATCAATCACCAGCGAAAGATTTAGAA 168
||| || | | | |||| |||| | | | ||||||||||||| ||||||| ||||
Sbjct 115 -GAG-GAAC-GTA-A--TCTTAATGCCGT-G-G-ATCAATCACCAGCAAAAGATTCAGAA 165
Query 169 TCTGCTG-TTGCTAATCAAAGTGATCTAAAGGGGAAAACTTCTAAGTATCCTCTTCTTGA 227
|| | || ||| | ||| || | | |||| ||||||||| | |||||| ||||||
Sbjct 166 TCCGTTGTTTG-TGATC-AA---A-C-CAAGGTGAAAACTTCCGTGGATCCTCCTCTTGA 218
Query 228 CCTTTCTTTTAAAGATTCTGTTGCTGGTTTTGATTCCCTCGACTTGTTTTGGAGAACTCC 287
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 219 CCTTTCTTTTAAAGATTCTGTTGCTGGTTTTGATTCCCTAGACTGGTTTTGGAGAACTCC 278
Query 288 GAACTTT--G-----T---G-GG-ATATAT-CGAGGAACCTCTTGATATTTATTTGAGAG 334
|| |||| | | | || || ||| |||||||||||||||| ||||||||| ||
Sbjct 279 GAGCTTTGAGCAACTTAGAGTGGAAT-TATCCGAGGAACCTCTTGATCTTTATTTGAAAG 337
Query 335 ATTCGTTCAATTACGTCGGCTCTTTCCGTCATGTTTCTGTGGCTGCTGAACCATCCGTGA 394
|||||||||||| | ||| |||||| |||||||||| ||| | ||| | | |
Sbjct 338 ATTCGTTCAATTCCATCGCCTCTTTACGTCATGTTTATGT-G--GCT-----A--C-T-- 384
Query 395 AAGAGTCAGAATCGGTTGTTTCTGAGCCATTTGTATCTGATTC--GT-----C-T--ATT 444
||| |||||| ||||||||||||||||||||| ||| ||| || | | |||
Sbjct 385 --GAGCCAGAATGGGTTGTTTCTGAGCCATTTGTGCCTGTTTCTTGTGCCACCGTGAATT 442
Query 445 TCTTGTCACACGGAGGTGAATATGAGAGATGATCATCAAAAACATAAGGGTGAGAAGGCC 504
|| | | ||||||||||| | ||||| ||| |||||||| ||| |||||||||||||
Sbjct 443 TC-AATGAAACGGAGGTGAAGA--AGAGA-GATGATCAAAAAGATAGGGGTGAGAAGGCC 498
Query 505 AAAAAGAAAACTCTTAATGATGAAATCGTGAGCCTATCGTCTTGTAGAAGAGCTGAAGAG 564
||||| ||||| ||||||||||||||| ||||| | || |||| |||||||||||||||
Sbjct 499 AAAAATAAAACGCTTAATGATGAAATCTTGAGCATTTCTTCTTCAAGAAGAGCTGAAGAG 558
Query 565 AAGAAGTGTGATGATGAAGAGGACAAAGAGGGCGTTGATAAGAGTGTAGATGATAGTTTG 624
|||||| |||||||||||||||||||||| |||| |||||||| ||||| |||||||||
Sbjct 559 AAGAAGAGTGATGATGAAGAGGACAAAGACGGCGACGATAAGAGAGTAGAAGATAGTTTG 618
Query 625 AGTACAGAAGAAGCTACGATGTCAAAGTTTTGCTTCTTCTGTGTTGATTTCTTAGCAAAT 684
|| ||| ||||||| || ||||||||| | | | || || ||||
Sbjct 619 AGAACAAAAGAAGCCACCATGTCAAAG----G------C------G---TCAAAG-AAAT 658
Query 685 TTATCTTCCTTGAATCAGCAGGTGTTAGACA-AAAAACAGCAGAAGAATATGGCAACAAA 743
|| || | ||||| ||||||||| |||| | || || |||||||||||||||||||||
Sbjct 659 TTCTC-TGGTTGAACCAGCAGGTGCTAGA-AGAAGAAGTGCAGAAGAATATGGCAACAAA 716
Query 744 GAGAAGAAGTGACGAGACGAAAACGTGTAGCACAAGTAACAAGAAGAATAAAAACGTATT 803
|||||||||||| || || ||||||||||||||||||||||||||||||||||||| | |
Sbjct 717 GAGAAGAAGTGAAGAAACAAAAACGTGTAGCACAAGTAACAAGAAGAATAAAAACGAAGT 776
Query 804 GGTGTCTCCTAGAAGATTAGAAGCAGAAACATGGCTGTCTCTTCCATACCCATATCATCA 863
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 777 GGTGTCTCCTAGAAGATTAGGAGCAGAAACATGGCTGTCTCTTCCATACCCATATGATCA 836
Query 864 TTATCCAATAAAATATCAGATTATGCAGAGTTCGATTCAGATGCAGCATTCCGGGATTGG 923
||||||||||| |||||||||||| |||||||| | ||||||||| ||||| |||||||
Sbjct 837 TTATCCAATAAGATATCAGATTATTCAGAGTTCAAGTCAGATGCAAAATTCCAGGATTGG 896
Query 924 AACAGAGCCTTTAGTTACATTTGTAGGTCAAAACCGTTTAAACCAACCCATTGGAGGTAT 983
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 897 AACAGAGCCTTTAGTTACATTTCTAGGTCAAAACCGTTTAAACCAACCCATTGGAGGTAT 956
Query 984 TGTTGGTCTTAGTGAGTTTCCCCAAGTTATTCAGGAGCTTTATTCTCTTCCTAATGCACC 1043
|||||||| ||||||||||| ||||||||| |||||| || ||||| ||| |||| |||
Sbjct 957 AGTTGGTCTCAGTGAGTTTCCTCAAGTTATTGAGGAGCATTGTTCTCCTCCCAATGTACC 1016
Query 1044 GCCACTTCCCAACCTCAATCTCCAAATACACCCACAGCCTCATCTCGGTGGTAGAGTTCG 1103
||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||
Sbjct 1017 ACCACTTCCCAACCTCAATCTCCAAACACACCCGCAGCCTCACCTTGGTGGTAGAGTTCG 1076
Query 1104 AAAGGAGCAGCCTTGA 1119
||||||||||||||||
Sbjct 1077 AAAGGAGCAGCCTTGA 1092
> Ahg943377 jgi|Araly1|943377|scaffold_603921.1
Length=190
Score = 239 bits (129), Expect = 4e-62
Identities = 172/192 (90%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 816 AAGATTAGAAGCAGAAACATGGCTGTCTCTTCCATACCCATATCATCATTATCCAATAAA 875
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAGATCAGAAGTAGAAACATGGCTGTCTCTTCCATACCCATATCATCATTATCCAATACG 62
Query 876 ATATCAGATTATGC-AGAGTTCGATTCAGATGCAGCATTCCGGGATTGGAACAGAGCCTT 934
|||||| ||||| | | || |||| ||||||||||||| || ||||| |||||||||||
Sbjct 63 ATATCATATTATTCTA-AGGTCGAATCAGATGCAGCAT-CCAGGATT--AACAGAGCCTT 118
Query 935 TAGTTACATTTGTAGGTCAAAACCGTTTAAACCAACCCATTGGAGGT-ATTGTTGGTCTT 993
|||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||||
Sbjct 119 TAGTTACATTTGTAGGTCAAAACCATTTAAACGAACCCATTGGAGGGCATAGTTGGTCTC 178
Query 994 AGTGAGTTTCCC 1005
||||||||||||
Sbjct 179 AGTGAGTTTCCC 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5