BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46320.1
Length=357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494339 jgi|Araly1|494339|fgenesh2_kg.8__155__AT5G46320.1 392 8e-109
> Ahg494339 jgi|Araly1|494339|fgenesh2_kg.8__155__AT5G46320.1
Length=266
Score = 392 bits (212), Expect = 8e-109
Identities = 248/266 (93%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 88 AGTGCTAGGAGAGTAAGATCTTCAACAAGGCAAACTAGGATTCTCAAGAATCAAGCCAAA 147
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 AGTGCTAGGAGAGTAAGATCTTCGACGAGGCAAACTAGGATTCTCAAGAATCAAGCCAAA 60
Query 148 CTTGATAGTCTCATGGCAGAATTGGAACAAATCAAAGCGTATGAGAAGGTTTTGAGGAAG 207
|||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 61 CTTGATTGTCTCATAGCAGAATTGGAACAAAGCAAAGCATATGAGAAGGTTTTGAGGAAG 120
Query 208 GGGCAAGAACAGAACATCAAAAAGTACAATAGGAAGGAGATTTCAGATCTAAAGTTGGAG 267
||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 GGGCAAGAACAAAACCTCAAAAACTACAATAGGAAGGAGATTTCAGATCTAAAGTTAGAG 180
Query 268 GACTTGGTTGTTTTTCAGAAAAAACTCGAAAATCTCCAAGATGATTTAAAGAAGAAACGT 327
||| ||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| |||
Sbjct 181 GACCTGGTTGTTTTTAAGAAAAAACTCGAGAATCTCCAAAATGATTTAGAGAAGAAGCGT 240
Query 328 GTAGAGCTGGAGGCTTCGTTGTCTCT 353
|||| |||||||||||| ||||||||
Sbjct 241 GTAGTGCTGGAGGCTTCATTGTCTCT 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12705811137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5