BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46320.1 Length=357 Score E Sequences producing significant alignments: (Bits) Value Ahg494339 jgi|Araly1|494339|fgenesh2_kg.8__155__AT5G46320.1 392 8e-109 > Ahg494339 jgi|Araly1|494339|fgenesh2_kg.8__155__AT5G46320.1 Length=266 Score = 392 bits (212), Expect = 8e-109 Identities = 248/266 (93%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 88 AGTGCTAGGAGAGTAAGATCTTCAACAAGGCAAACTAGGATTCTCAAGAATCAAGCCAAA 147 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1 AGTGCTAGGAGAGTAAGATCTTCGACGAGGCAAACTAGGATTCTCAAGAATCAAGCCAAA 60 Query 148 CTTGATAGTCTCATGGCAGAATTGGAACAAATCAAAGCGTATGAGAAGGTTTTGAGGAAG 207 |||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 61 CTTGATTGTCTCATAGCAGAATTGGAACAAAGCAAAGCATATGAGAAGGTTTTGAGGAAG 120 Query 208 GGGCAAGAACAGAACATCAAAAAGTACAATAGGAAGGAGATTTCAGATCTAAAGTTGGAG 267 ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 121 GGGCAAGAACAAAACCTCAAAAACTACAATAGGAAGGAGATTTCAGATCTAAAGTTAGAG 180 Query 268 GACTTGGTTGTTTTTCAGAAAAAACTCGAAAATCTCCAAGATGATTTAAAGAAGAAACGT 327 ||| ||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| ||| Sbjct 181 GACCTGGTTGTTTTTAAGAAAAAACTCGAGAATCTCCAAAATGATTTAGAGAAGAAGCGT 240 Query 328 GTAGAGCTGGAGGCTTCGTTGTCTCT 353 |||| |||||||||||| |||||||| Sbjct 241 GTAGTGCTGGAGGCTTCATTGTCTCT 266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12705811137 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5