BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46330.1
Length=3727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356368 jgi|Araly1|356368|fgenesh1_pg.C_scaffold_8000155 4566 0.0
> Ahg356368 jgi|Araly1|356368|fgenesh1_pg.C_scaffold_8000155
Length=3528
Score = 4566 bits (2472), Expect = 0.0
Identities = 3201/3552 (90%), Gaps = 54/3552 (2%)
Strand=Plus/Plus
Query 67 ATGAAGTTACTCTCAAAGACCTTTTTGATATTAACTCTCACCTTCTTCTTCTTTGGCATT 126
||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 1 ATGAAGTTACTCTCAGAGACCTTTCTGATATTAACTCTCACTTTCTTCTTCTTTGGCTTT 60
Query 127 GCACTAGCGAAACAGAGCTTTGAACCAGAGATCGAAGCTTTGAA-ATCCTTCAAGAATGG 185
|||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 61 GCACTAGCGAAACAGAGCTTTGAACCAGAGATTGAAGCTTT-AAGATCCTTCAAGAGTGG 119
Query 186 TATTTCCAACGACCCTTTAGGAGTATTATCAGATTGGACCATCATCGGTTCGTTACGACA 245
||||||| |||||||||||||||||| || ||||||||||||| ||||||| |||||||
Sbjct 120 CATTTCCATCGACCCTTTAGGAGTATTGTCGGATTGGACCATCACCGGTTCGGTACGACA 179
Query 246 CTGTAATTGGACCGGAATCACCTGCGATAGTACCGGACATGTAGTCTCGGTTTCCTTGCT 305
||| |||||||||||||||||||||||||||||||| || || ||||| |||||||||||
Sbjct 180 CTGCAATTGGACCGGAATCACCTGCGATAGTACCGGCCACGTTGTCTCTGTTTCCTTGCT 239
Query 306 GGAGAAGCAACTTGAAGGTGTTCTGTCTCCAGCCATAGCGAATCTCACCTATCTCCAGGT 365
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 240 GGAGAAGCAACTTGAAGGTGTTCTGTCCCCAGCCATAGCAAATCTCACCTATCTCCAGGT 299
Query 366 TCTTGATCTCACTTCAAATAGTTTTACCGGCA-AAATACCGGCTGAAATAGGAAAGTTAA 424
|||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||||
Sbjct 300 TCTTGATCTCACTTCAAATAATTTTACCGG-AGAAATACCGGCTGAAATCGGAAAGTTAA 358
Query 425 CCGAGCTTAACCAGCTTATTCTGTACCT-AAACTATTTCTCTGGTTCGATTCCTTCTGGA 483
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |
Sbjct 359 CCGAGCTTAACCAGCTTATTCTTTA-CTCAAACTATTTCTCTGGTTCGATTCCTTCTGAA 417
Query 484 ATCTGGGAGCTTAAGAATATTTTCTATCTTGATCTTAGAAATAATTTGTTGTCCGGTGAT 543
|| ||||| ||||||||| || | | ||||||||| |||||||||||||| ||||||||
Sbjct 418 ATTTGGGAACTTAAGAATCTTATGTCTCTTGATCTGAGAAATAATTTGTTAACCGGTGAT 477
Query 544 GTTCCTGAGGAAATCTGCAAAACCAGTTCTTTGGTA-TTGATTGG-GTTTGATTACAACA 601
|||||| | | ||| |||||||| || |||||||| | | | || ||| || ||||||
Sbjct 478 GTTCCTAAAGCAATTTGCAAAACTAGAACTTTGGTAGTAG-TAGGAGTTGGA-AACAACA 535
Query 602 ACTTAACCGGGAAAATACCAGAATGCTTAGGAGATTTGGTTCATCTCCAAATGTTTGTAG 661
|||||||||| || |||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 536 ACTTAACCGGTAATATACCAGATTGCTTAGGAGATTTGGTTCATCTAGAGGTGTTTGTAG 595
Query 662 CAGCTGGTAACC-ATTTAACTGGTTCGATTCCGGTATCAATTGGTACTCTGGCTAATTTA 720
||| | ||||| || | |||||||||||||||| || |||||||| ||| |||| |
Sbjct 596 CAGATATTAACCGGCTT-AGTGGTTCGATTCCGGTAACAGTTGGTACTTTGGTTAATCTG 654
Query 721 ACGGATTTAGACCTGAGTGGTAACCAGTTAACCGGAAAAATACCGAGAGATTTTGGAAAT 780
||| ||||||||||||||||||||||||||||||| | |||||| ||||| | ||||||
Sbjct 655 ACGAATTTAGACCTGAGTGGTAACCAGTTAACCGGTAGAATACCAAGAGAGATAGGAAAT 714
Query 781 CTCTTGAACTTACAGTCTCTCGTTTTAACTGAAAACTTGTTGGAAGGAGATATACCAGCT 840
||||||||| ||||| |||||||| || ||| ||||||||||||||||| ||||| |||
Sbjct 715 CTCTTGAACATACAGGCTCTCGTTCTATTTGATAACTTGTTGGAAGGAGAAATACCGGCT 774
Query 841 GAGATCGGAAACTGCTCGAGCTTGGTCCAACTTGAGCTTTACGATAACCAGTTAACCGGG 900
||||||||||||||| |||||||| || | |||||||| |||| ||||||||||||||||
Sbjct 775 GAGATCGGAAACTGCACGAGCTTGATCGACCTTGAGCTGTACGGTAACCAGTTAACCGGG 834
Query 901 AAAATACCAGCTGAATTAGGGAATTTGGTTCAGCTGCAAGCACTCCGGATATACAAGAAC 960
||||||||||||| |||||||||||||||||||| |||| |||||| ||||| ||||
Sbjct 835 CGAATACCAGCTGAACTAGGGAATTTGGTTCAGCTGGAAGCCCTCCGGTTATACGGGAAC 894
Query 961 AAACTTACTTCTTCAATTCCATCTTCATTGTTCCGGTTAACTCAG-TTAACCCATTTGGG 1019
|| || | ||| ||| ||||||| |||||||| |||||||| | | |||| || ||||
Sbjct 895 AACCTCAATTCCTCACTTCCATCCTCATTGTTTCGGTTAACGC-GTTTAAGATATCTGGG 953
Query 1020 GTTATCAGAAAACCATTTGGTTGGACCGATAT-CAGAAGAAATCGGTTTTCTTGAGTCAC 1078
|||||||||||||| ||||||||||| || | | ||||||||||||| ||| ||||||
Sbjct 954 ATTATCAGAAAACCAGTTGGTTGGACCAAT-TCCCGAAGAAATCGGTTCTCTCAAGTCAC 1012
Query 1079 TTGAAGTCCTCACACTTCATTCCAACAACTTCACAGGAGAGTTTCCACAGTCCATCACAA 1138
|| ||||||| || || |||||||||||||| || |||||||||||||||||||||||||
Sbjct 1013 TTCAAGTCCTAACGCTCCATTCCAACAACTTAACTGGAGAGTTTCCACAGTCCATCACAA 1072
Query 1139 ACTTGAGGAACTTGACAGTCCTAACGGTGGGGTTCAATAATATTTCCGGTGAGCTCCCGG 1198
||||||||||||||||||| | ||| ||||||||||| ||||||||||||||||||| |
Sbjct 1073 ACTTGAGGAACTTGACAGTGATGACGATGGGGTTCAATTATATTTCCGGTGAGCTCCCAG 1132
Query 1199 CGGATCTAGGGCTTCTTACAAACCTTCGGAACCTTTCAGCGCACGACAATCTTCTTACCG 1258
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 1133 CGGATCTAGGGCTTCTTACAAACCTTAGAAACCTTTCAGCGCACGACAATCATCTTACCG 1192
Query 1259 GACCAATACCTTCCAGCATAAGTAACTGCACCGGTCTTAAACTCCTGGACCTGTCTCACA 1318
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1193 GACCAATACCTTCTAGCATAAGTAACTGCACCGGTCTTAAACTCCTGGACCTGTCTTTTA 1252
Query 1319 ACCAA-ATGACTGGCGAGATCCCGCGGGGTTTCGGAAGGATGAATCTTAC-GTTCATTTC 1376
| ||| ||||||||| |||| ||| ||||||| |||||| |||||||||| | || ||||
Sbjct 1253 A-CAAGATGACTGGCAAGATTCCGTGGGGTTTAGGAAGGCTGAATCTTACGGCTC-TTTC 1310
Query 1377 TATTGGGAGGAATC-ATTTCACCGGTGAAATTCCAGATGATATCTTCAACTGTTCAAACT 1435
| ||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1311 TCTTGGGCCGAATCGGTTT-ACCGGCGAAATTCCAGATGATATCTTCAACTGTTCAAACA 1369
Query 1436 TGGAAACTCTTAGTGTGGCAGATAACAACTTAACAGGAACTCTCAAGCCATTAATTGGGA 1495
||||||| |||| | |||| | ||||||||||||||||| ||||||||||| ||||| |
Sbjct 1370 TGGAAACCCTTAATCTGGCCGGGAACAACTTAACAGGAACGCTCAAGCCATTCATTGGAA 1429
Query 1496 AGCTTCAA-AAACTCAGGATTTTGCAAGTTTCATATAACTCTCTCACTGGACCGATTCCT 1554
||||| || |||||||||||||| ||||| || | |||||||||||| ||| ||||||
Sbjct 1430 AGCTT-AAGAAACTCAGGATTTTTCAAGTGTCGTCTAACTCTCTCACAGGAAAGATTCCG 1488
Query 1555 CGAGAAATCGGGAATCTGAAAGATTTGAATA-TCTTGTACCTTCACTCTAATGGTTTCAC 1613
|||| ||||||||||||| ||| ||| ||| ||||||| ||||| |||||| |||||||
Sbjct 1489 GGAGAGATCGGGAATCTGAGAGAGTTG-ATACTCTTGTATCTTCATTCTAATCGTTTCAC 1547
Query 1614 AGGGAGAATCCCGAGAGAGATGTCGAATCTCACTCTCCTCCAGGGGCTAAGGATGTATTC 1673
||||| ||||||||| ||||| || ||||||||||||||||||||||| || || ||
Sbjct 1548 AGGGATAATCCCGAGGGAGATATCAAATCTCACTCTCCTCCAGGGGCTTGGGCTGCATAG 1607
Query 1674 AAATGATCTTGAAGGTCCAATTCCTGAAGAAATGTTTGATATGAAGCTACTCTCAGTTCT 1733
||||| ||||||||||||||||||||||||||||||||| |||| || ||| |||| ||
Sbjct 1608 AAATGGTCTTGAAGGTCCAATTCCTGAAGAAATGTTTGACATGATGCAACTTTCAGAGCT 1667
Query 1734 TGATCTTTCCAACAACAAATTCTCAGGTCAAATTCCTGCCTTGTTCTCCAAGCTTGAATC 1793
||| || |||| ||||||||||||||||| ||| |||||||||||||| ||||| ||||
Sbjct 1668 TGAGCTATCCAGCAACAAATTCTCAGGTCCAATACCTGCCTTGTTCTCGAAGCTACAATC 1727
Query 1794 GCTTACCTACTTGA-GTCTTCAAGGAAACAAATTCAACGGGTCTATCCCTGCAAGCCTTA 1852
|||||||||||| | |||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1728 GCTTACCTACTT-AGGTCTACACGGAAACAAGTTCAACGGGTCTATCCCTGCAAGCCTTA 1786
Query 1853 AGTCGCTTTCGCTTCTCAACACATTCGATATCTCCGACAATCTTCTCACTGGAACCATCC 1912
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1787 AGTCACTTTCGCTTCTCAACACATTCGATATCTCCGACAATCTTCTCACCGGAACCATCC 1846
Query 1913 CTGGA-GAGCTGTTAGCTTCTTTGAAAAACATGCAGCTTTACCTCAACTTCTCAAACAAC 1971
|| || ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1847 CT-GAGGAGCTGTTATCTTCGATGAAAAACATGCAGCTTTACCTCAACTTCTCAAACAAC 1905
Query 1972 TTGTTGACTGGAACCATC-CCAAAGGAGCTTGG-AAAGCTTGAAATGGTTCAAGAAATCG 2029
|| ||||||||||||||| || || |||||||| ||| ||||||||||||||||||||||
Sbjct 1906 TTCTTGACTGGAACCATCTCC-AACGAGCTTGGCAAA-CTTGAAATGGTTCAAGAAATCG 1963
Query 2030 ACCTTTCAAACAATCTCTTTTCTGGGTCTATTCCAAGATCTTTACAGGCCTGCAAAAATG 2089
|| |||| |||||||||||||| ||||||||||||| ||| ||| |||||||||||||||
Sbjct 1964 ACTTTTCGAACAATCTCTTTTCCGGGTCTATTCCAATATCGTTAAAGGCCTGCAAAAATG 2023
Query 2090 TGTTCACACTGGATTTTTCGCAGAACAATCTCTCGGGTCATATACCAGATGAAGTCTT-- 2147
||||||||||||||||||||| ||||||| |||||||||| || |||| |||||||||
Sbjct 2024 TGTTCACACTGGATTTTTCGCGGAACAATATCTCGGGTCAGATCCCAGGTGAAGTCTTCC 2083
Query 2148 -CC-A--AGGCATGGATATGATCATAAGCTTGAACCTTTCAAGGAACAGTTTCTCTGGAG 2203
|| | |||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 2084 ACCAAGGAGGCATGGATATGATCATAAGCTTGAACCTTTCAAGAAACAGTCTCTCTGGTG 2143
Query 2204 AAATCCCTCAGAGCTTCGGGAACATGACGCATTTGGTCTCCTTGGATCTCTCTAGTAACA 2263
||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2144 GAATCCCTGAGGGCTTCGGGAACTTGACGCATTTGGTCTCCTTGGATCTTTCTAGTAACA 2203
Query 2264 ATCTCACTGGTGAAATTCCAGAGAGTCTCGCCAATCTTTCGACTCTGAAACATCTCAAAC 2323
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2204 ATCTCACAGGTGAAATTCCAGAGAGTCTCGCCAATCTTTCGACTCTGAAACATCTCAGAC 2263
Query 2324 TAGCTTCAAACAACCTCAAAGGCCATGTTCCTGAATCCGGGGTGTTCAAAAACATCAACG 2383
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2264 TAGCTTCAAACCACCTCAAAGGCCATGTTCCTGAATCCGGTGTGTTCAAAAACATCAACG 2323
Query 2384 CCTCTGATCTAATGGGAAACACAGATCTCTGTGGTAGCAAGAAGCCTCTCAAGCCATGTA 2443
| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2324 CGTCTGATCTGATGGGAAACACAGATCTCTGTGGCAGAAAGAAGCCTCTCAAGCCATGTA 2383
Query 2444 CGATCAAGCAGAAGTCGAGCCACTTCTCGAAGAGAACCAGAGTCATCCTGATTATTCTTG 2503
||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 2384 TGATCAAGAAGAAGTCGAGCCACTTCTCGAAGAGAACCAGAATCATCGTGATTGTTCTTG 2443
Query 2504 GATCAGCCGCGGCTCTTCTTCTTGTCCTGCTTCTTGTTCTGATTCTAACCTGTTGCAAGa 2563
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 2444 GATCAGCCGCGGCTCTTCTTCTTGTCCTGCTTCTTGTTCTGTTTCTCACCTGTTACAAGA 2503
Query 2564 aaaaagaaaaaaaGATTGAAAATTCATCAGAGTCCTCATTACCGGATTTGGATTCAGCTC 2623
|||| ||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 2504 AAAAGGAAAAAAAGATAGAAAACTCATCAGAGTCTTCATTACCAAATTTGGATTCAGCTC 2563
Query 2624 TGAAACTGAAGAGATTTGAACCAAAAGAGTTGGAGCAAGCAACAGATTCATTCAACAGTG 2683
|||| ||||||||||| || |||||||||||||| |||||||||||||| ||||||||||
Sbjct 2564 TGAAGCTGAAGAGATTCGATCCAAAAGAGTTGGAACAAGCAACAGATTCTTTCAACAGTG 2623
Query 2684 CCAACATCATTGGCTCAAGCAGCTTAAGCACAGTGTACAAAGGTCAGCTAGAAGATGGGA 2743
| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2624 CTAACATCATTGGTTCAAGCAGCTTAAGCACAGTGTACAAAGGTCAGCTAGTAGATGGGA 2683
Query 2744 CAGTGATTGCAGTAAAAGTATTGAATCTAAAGGAATTCTCTGCAGAATCAGACAAGTGGT 2803
||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||||
Sbjct 2684 CAGTGATCGCAGTAAAAGTATTGAATCTGAAGCAATTCTCTGCAGAATCAGATAAATGGT 2743
Query 2804 TCTACACAGAAGCTAAAACATTGAGCCAACTAAAACATCGAAACCTGGTGAAGATCTTAG 2863
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2744 TCTACACAGAAGCCAAAACATTGAGCCAACTAAAACATCGAAACCTGGTGAAGATCTTAG 2803
Query 2864 GGTTTGCGTGGGAAAGCGGCAAAACGAAAGCTTTAGTGCTTCCATTTATGGAGAATGGAA 2923
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2804 GGTTTGCTTGGGAAAGCGGCAAAATGAAAGCTTTAGTGCTTCCATTTATGGAGAATGGAA 2863
Query 2924 ACTTGGAGGACACCATTCACGGCTCTGC-AGCACCGATTGGGTCGCTT-TTAGAAAAAAT 2981
|||||||||||| |||||||||||||| | ||||||| |||||| || | ||| | |||
Sbjct 2864 GCTTGGAGGACACGATTCACGGCTCTGCTA-CACCGATCGGGTCG-TTATCAGAGAGAAT 2921
Query 2982 CGATCTTTGTGTTCATATCGCAAGCGGAATCGATTATCTTCATTCTGGATATGGTTTTCC 3041
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2922 AGATCTTTGTGTTCATATCGCAAGCGGAATCGATTATCTTCATTCTGGATTTGG-TTTCC 2980
Query 3042 C-ATCGTTCATTGTGATCTGAAGCCAGCTAATATACTCCTTGACAGTGACCGCGTTGCTC 3100
| || ||||||||||||||||||||||| ||||||||||| |||||||| || |||||||
Sbjct 2981 CAATTGTTCATTGTGATCTGAAGCCAGCAAATATACTCCTCGACAGTGATCGTGTTGCTC 3040
Query 3101 ACGTAAGCGATTTTGGAACTGCTCGGATTCTAGGTTTCCGCGAAGATGGAAGCACCACAG 3160
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 3041 ACGTAAGCGATTTCGGAACTGCTCGAATTCTAGGTTTCCGTGAAGATGGAAGCACCACAG 3100
Query 3161 CTTCAACAT-CAGCCTTCGAGGGTACAATTGGATACTTAGCTCCAGAGTTTGCTTATATG 3219
|||| || | |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3101 CTTCTAC-TGCAGCTTTCGAGGGCACAATTGGATACTTAGCTCCAGAGTTTGCTTATATG 3159
Query 3220 AGGAAAGTGACAACAAAAGCCGATGTATTCAGCTTCGGGATCATAATGATGGAGCTGATG 3279
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3160 AGCAAAGTGACAACAAAAGCCGATGTATTCAGCTTCGGGATCATAATGATGGAGCTAATG 3219
Query 3280 ACGAAACAGAGACCAACTTCGTTGAATGATGAAGATTCACAAGACATGACTTTGCGCCAA 3339
|||| |||||||||||||||||||||||||||| | ||||||| |||||||||||| |||
Sbjct 3220 ACGAGACAGAGACCAACTTCGTTGAATGATGAAAAGTCACAAGGCATGACTTTGCGTCAA 3279
Query 3340 TTGGTGGAGAAATCGATTGGAAATGGAAGAAAAGGGATGGTTAGGGTTCTTGATAT-GGA 3398
|||||||||||||| |||||| |||||| | |||||||| |||||||||||||| | |||
Sbjct 3280 TTGGTGGAGAAATCAATTGGAGATGGAACAGAAGGGATGATTAGGGTTCTTGAT-TCGGA 3338
Query 3399 ACTCGGGGACTCTATTGTTTCTCTG-AAACAGGAAGAGGCTATTGAAGACTTT-CTGAAG 3456
|||||||||| |||||||| ||| | |||||||||||||| |||||||| ||| |||||
Sbjct 3339 ACTCGGGGACGCTATTGTTACTC-GCAAACAGGAAGAGGCCATTGAAGA-TTTGTTGAAG 3396
Query 3457 CTTTGTTTGTTCTGTACAAGCTCTAGACCTGAAGATCGACCTGATATGAACGAGATTCTT 3516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3397 CTTTGTTTGTTCTGTACAAGCTCTAGACCTGAAGATCGACCTGATATGAACGAGATTCTT 3456
Query 3517 ACACATCTGATGAAACTTAGAGGCAAAGCGAATTCATTTCGAGAAGATCGTAACGAGGAT 3576
| ||| ||||||||| |||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 3457 ATACAGCTGATGAAAGTTAGAGGCAAAGCGAACTCATTTCAAGAAGATCGTAACGAGGAT 3516
Query 3577 CGAGAAGTTTAG 3588
||||||||||||
Sbjct 3517 CGAGAAGTTTAG 3528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140813020100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5