BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46340.1
Length=2238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494338 jgi|Araly1|494338|fgenesh2_kg.8__154__AT5G46340.1 2693 0.0
Ahg477961 jgi|Araly1|477961|fgenesh2_kg.3__662__AT3G06550.1 387 3e-106
> Ahg494338 jgi|Araly1|494338|fgenesh2_kg.8__154__AT5G46340.1
Length=2122
Score = 2693 bits (1458), Expect = 0.0
Identities = 1749/1884 (93%), Gaps = 42/1884 (2%)
Strand=Plus/Plus
Query 53 aaaaaTCAGTCGCCGGCGATC-GAAAACGACAACTCGCCGAACGTCTTTCTCTCTTCTTC 111
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAAAATCAGTCGCCGGCGA-CTGAAAACGACAACTCGCCGAACGTCTTTCTTTCTTCTTC 59
Query 112 AAG----CAAACACTTTCACAtctctc--tc--tctctctcATATTTATGATGATCGTCT 163
||| |||||||||||||||||||| || |||||||| |||||||||| | | |
Sbjct 60 AAGCAAACAAACACTTTCACATCTCTCTTTCTTTCTCTCTCGTATTTATGAT--T-AT-T 115
Query 164 GCTACTAGAGATCACTATAACCAGATCA-TCTTCTTTATTCGTCG--GTTAACGTCTCAA 220
| | || | | | |||||||||||| |||||||||||||||| ||| | |||
Sbjct 116 G-T-CT---GCT-A--ATAACCAGATCATTCTTCTTTATTCGTCGAATTTATC-TCT-GG 165
Query 221 TCTCTCT-CTGTTCGGAAGT-TTTGAATAGAGATCGTTAAAAATGGTGGATCCTGGACCA 278
| | ||| | |||| ||| | |||||||||||||||| |||||||||||||| |||||
Sbjct 166 TGTATCTGCAGTTC-GAA-TGCTTGAATAGAGATCGTT-AAAATGGTGGATCCGGGACCT 222
Query 279 ATTACTCCGGGCCAGGTATCTTTTCT-TCTTGGAGTAATCCCAATATTTGTTGGTTGGAT 337
||||| |||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 223 ATTACACCGGGCCAGGTATCTTTTCTAT-TTGGAGTAATACCAATATTTGTTGGTTGGAT 281
Query 338 ATACTCGGAGTTACTTGAGTACAGAAAATCTTGGGTTCCCTTGAAACCTCACTCGGATAA 397
||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 282 ATACTCGGAGTCACTTGAATACAGGAAATCTTTGGTTCCCTTGAAACCTCACTCGGATAA 341
Query 398 TAATCTAGTTGAATTGGGAGACGTAGCAGAGAAGGACGACGACAAAGCTGATCTGTTGGA 457
|||||| |||||| |||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 342 TAATCTGGTTGAACTGGGGGACGTAGCAGAGAAGGACGATGACAAAGCTGATTTGTTGGA 401
Query 458 GGGAGGTCTTGCCCGAT-C-ACCATCTGTAAAGTTTCATAATTCATCTATCAGAACAAAC 515
|||||||||| |||| | | | ||||||||| ||||||||||||||| ||||||||||||
Sbjct 402 GGGAGGTCTTACCCG-TGCGA-CATCTGTAAGGTTTCATAATTCATCCATCAGAACAAAC 459
Query 516 ATAATCAGGTTTTTGAGTATGGAAGATTCATTTTTGCTGGAACATCGAGCAACCTTGAGA 575
||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 460 ATAGTCAGGTTTTTGAGTATGGAAGATTCATTTTTGCTGGAACACCGTGCAACATTGAGA 519
Query 576 GCAATGTCGGAATTTGGGGCAATCTTAATATATTTCTATATCTGTGACCGCACAGAATTG 635
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 520 GCAATGTCGGAGTTTGGGGCAATCTTAATATATTTCTATATCTGTGACCGCACGGAATTG 579
Query 636 CTTGGAGATTCTACCAAGAATTACAACCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTC 695
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 580 CTTGGAGATTCTACCAAGCATTACAATCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTC 639
Query 696 ATCATAGTATCAGCCATGACATCTCTCAGAAAACACAATGACAAGTCACCCATATCTGGG 755
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 640 ATCATAGTATCAGCCATGACATCTCTCAGAAAACACAATGACAAGTCACCCATAACTGGG 699
Query 756 AAGTCCATTCTTTACCTTAATCGCCACCAAACTGAAGAATGGAAAGGATGGATGCAGGTT 815
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 700 AAATCCATTCTTTACCTTAATCGCCACCAGACTGAAGAGTGGAAAGGATGGATGCAGGTT 759
Query 816 TTGTTCTTAATGTATCACTACTTTGCTGCGGCCGAGATATACAACGCAATCCGTATCTTT 875
|||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 760 TTGTTCTTGATGTATCACTACTTTGCTGCGGCTGAGATTTACAACGCTATCCGTATCTTT 819
Query 876 ATTGCTGCTTATGTTTGGATGACTGGTTTTGGAAACTTCTCTTACTACTATGTCAGAAAG 935
||||||||||| || ||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 820 ATTGCTGCTTACGTCTGGATGACTGGTTTTGGAAACTTTTCGTATTACTACGTCAGAAAG 879
Query 936 GATTTCTCTGTTGCACGTTTTGCGCAGATGATGTGGAGGCTGAACTTCTTTGTAGCGTTT 995
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 880 GATTTCTCTGTTGCACGTTTTGCACAGATGATGTGGAGGCTGAACTTCTTTGTAGCATTT 939
Query 996 TGCTGTATTGTTCTCAACAACGACTATATGTTATACTACATCTGCCCAATGCACACTCTT 1055
|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 940 TGCTGTATTGTTCTCAACAATGACTATATGTTGTATTACATCTGCCCAATGCACACTCTC 999
Query 1056 TTCACCCTAATGGTATATGGAGCTCTGGGTATCTTCAGCAAGTACAATGAGATAGGATCG 1115
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TTCACCCTAATGGTTTACGGAGCTCTGGGTATCTTCAGCAAGTACAATGAGATAGGATCT 1059
Query 1116 GTGATGGCTCTGAAGATATTTTCATGCTTCCTCGTTGTCTTTTTGTTGTGGGAAATTCCT 1175
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1060 GTGATGGCTCTGAAAATATTTTCATGCTTCCTCGTTGTCTTTTTGTTATGGGAAGTTCCT 1119
Query 1176 GGAGCTTTTGAAATATTTTGGGGTCCCTTAACATTTTTGCTAGGTTACAATGACCCTGCC 1235
||||||||||||||||| |||||||| ||||| || ||| ||||||||| |||||||||
Sbjct 1120 GGAGCTTTTGAAATATTCTGGGGTCCATTAACGTTCTTGTTAGGTTACAGTGACCCTGCG 1179
Query 1236 AAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATA 1295
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1180 AAGCCTGATCTTCATCGACTGCATGAATGGCACTTCAGATCAGGCCTTGATCGCTACATA 1239
Query 1296 TGGATCATCGGAATGATTTATGCCTATTATCACCCAACTGTAGAGAGATGGATGGAGAAG 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TGGATCATCGGAATGATTTATGCCTATTATCACCCAACTGTAGAGAGATGGATGGAGAAG 1299
Query 1356 TTAGAGGACTGTGAAACGAAGAAAAGACTATCCATAAAGGCCGCTATTGTTACTATTACT 1415
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1300 TTAGAGGACTGTGAAACGAAGAAAAGACTATCCATAAAGACCACTATTGTTACTATTACT 1359
Query 1416 GTGCTTGTTGGCTATGTGTGGTATGAATGTATCTACAAGCTGGACAGGACCAGTTACAAC 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 GTGCTTGTTGGCTATGTGTGGTATGAATGTATCTACAAGCTGGACAGGACCAGTTACAAC 1419
Query 1476 ATGTATCATCCGTACACATCATGGATCCCCATCACTGTTTACATATGCCTTCGGAATTTC 1535
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1420 ATGTATCATCCATACACATCTTGGATCCCCATCACTGTTTACATATGCCTTCGGAATTTC 1479
Query 1536 ACCCACCAGCTTCGAAGTGTCTCATTGACTCTCTTTGCGTGGCTTGGCAAGATCACTTTA 1595
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1480 ACCCACCAGCTTCGGAGTGTCTCATTGACTCTCTTCGCGTGGCTTGGCAAGATCACTTTA 1539
Query 1596 GAGACTTACATTTCCCAGTTTCATATATGGCTAAGATCAAACATGCCTGACGGGCAACCA 1655
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1540 GAGACTTACATTTCCCAGTTTCATATATGGCTAAGATCAAACATGCCTGATGGGCAACCA 1599
Query 1656 AAATGGCTTCTCTCTATTATTCCGGGATACCCTATGCTCAATTTCATGCTGACAACTGCT 1715
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 1600 AAATGGCTTCTCTCTATTATTCCGGGATACTCTATGCTTAATTTCATGCTCACAACTGCA 1659
Query 1716 ATATACGTCCTTGTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACGGTTTTC 1775
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1660 ATTTACATCCTAGTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACTGTTTTC 1719
Query 1776 GTACCCACAAAAGACAACAAGCGA-CTCTTCTCTAACTTCATAGCTGGGATTGCCATCGC 1834
|||||||||||||||||||| | | ||||| |||||||||||||||||||| ||||||||
Sbjct 1720 GTACCCACAAAAGACAACAAAC-ATCTCTTTTCTAACTTCATAGCTGGGATCGCCATCGC 1778
Query 1835 TCTTCCACTCTATTGCTTCTCATTCGTTCTTCTTCAGATTCATCGTTAGAAACC-GCAAA 1893
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1779 TCTTCCTCTATATTGCTTCTCATTCGTTCTTCTTCAGATTCATCGTTAGAAACCCGCAAA 1838
Query 1894 AACAAGTGTTTGTTCTTTGTGTTT 1917
|| ||||||| |||||||||||||
Sbjct 1839 AAGAAGTGTT-GTTCTTTGTGTTT 1861
> Ahg477961 jgi|Araly1|477961|fgenesh2_kg.3__662__AT3G06550.1
Length=2045
Score = 387 bits (209), Expect = 3e-106
Identities = 931/1263 (74%), Gaps = 116/1263 (9%)
Strand=Plus/Plus
Query 604 TATA-TTTCTATATCTGTGACCGCACAGAATTG-CTTGGAGATTCTA-CCAAG-A-A-TT 657
|||| ||| || || ||||||||||||| | || ||| | |||| | | ||| | | ||
Sbjct 557 TATACTTT-TACATATGTGACCGCACAG-A-TGTCTT-CA-ATTC-ATCAAAGAAGAGTT 610
Query 658 ACAACCGCGACCT-TTTCCTTTTTCTCTACGTT-CTTCTCATCATAGTATCAGCCATGAC 715
||||||| || || ||| || || || ||| || ||||||||||| || ||||| || ||
Sbjct 611 ACAACCGGGATCTCTTT-CTGTTCCTTTAC-TTCCTTCTCATCATCGTTTCAGCGATAAC 668
Query 716 ATC-TCTCA-GAAAACACAATGACAAGTCACCCATATCTG-GG--AAGTCCATTC-TTTA 769
|| | ||| | | ||| ||||| || ||| |||| || | || ||| ||| || | ||
Sbjct 669 TTCGT-TCACG-ATACATAATGATAAATCA-CCAT-TCAGCGGAAAAG-CCA-TCATGTA 722
Query 770 CCTT-AATCGCCACCAAACTGAAGAATGGAAAGGATGGATGCAGGT-TTTGTTCTTAATG 827
||| ||| | || ||||| || || |||||||| ||||||||||| || ||||| |||
Sbjct 723 -CTTGAATAGGCATCAAACCGAGGAGTGGAAAGGCTGGATGCAGGTCCTT-TTCTTGATG 780
Query 828 TATCACTACTTTGCTGCGGCCGAGATA-TACAACGCAATCCGTATCTTT-ATTGC-TGCT 884
|| |||||||||||||| || ||| || || || || |||||| | ||| ||||| |||
Sbjct 781 TACCACTACTTTGCTGCTGCAGAG-TACTATAATGCGATCCGTGT-TTTCATTGCTTGC- 837
Query 885 TATGTTTGGATGACTGGTTTTGGAAACTTCTCTTACTACT--ATGTCAGAAAGGA-TTTC 941
||||| ||||||||||| ||||| || || ||||| || | || || | ||||| |||
Sbjct 838 TATGTATGGATGACTGGATTTGGGAATTTTTCTTATTATTACAT-TC-GCAAGGACTTT- 894
Query 942 TCTGTTGCACGTTTTGCGCAGATGATGTGGAGGCTGAACTTCTTTGT-AGCGTTTTGCTG 1000
| || || | ||||| |||||||||||| |||| || ||| | || | | ||| |||
Sbjct 895 AGTCTTCCAAGGTTTGCACAGATGATGTGGCGGCTAAATTTCCTGGTCATAG-TTTCCTG 953
Query 1001 TATTGTTCTCAACAACGA-CTATATGTTATACTACATCTGCCCAATGCACACTCT-TTTC 1058
|| || ||||||||| | || ||| |||||||||||||||||||||||||||| |||
Sbjct 954 CATCGTCCTCAACAAC-AGTTACATGCTATACTACATCTGCCCAATGCACACTCTGTTT- 1011
Query 1059 ACCCTAATGGTATATGGAGCTCTGGGTAT-CTTCAGCAAGTACAATGAGATAGGATCGGT 1117
|| || ||||| |||||||| || || || || | |||||| |||||||| || || ||
Sbjct 1012 ACTCTGATGGTCTATGGAGCACTTGGCATTCTGAA-CAAGTATAATGAGATGGGTTCAGT 1070
Query 1118 GATGGCT-CTGAAGATATTTT-CATGCTTCCTCGTTGTCTTTT-T-GTTGTGGGAAATTC 1173
|| ||| | || || |||| | |||||| | ||||| | | | ||| ||||||||||
Sbjct 1071 CATAGCTGCC-AA-ATTTTTTGCCTGCTTCGTTGTTGT-TATCATCGTT-TGGGAAATTC 1126
Query 1174 CTGGAGCTTTTGAAAT--ATTTTGGGGTCCCTTAACATTTTTGCTAGGTTACAATGA-CC 1230
| || | ||||||| | |||| || |||| || ||| | | | ||||||||||| ||
Sbjct 1127 CGGGCGTTTTTGAA-TGGATTT-GGAGTCCTTTTACACTCCTAATGGGTTACAATGATCC 1184
Query 1231 CTGCCAAGCC-CGATCTTCATCGGCT-GCATGAATGGCACTTTA-GATCAGGCCTTGATC 1287
| || || || | | |||| | || |||||| ||||| ||| | || ||||||||||
Sbjct 1185 C-GCAAAACCAC-AGCTTCCCCT-CTTGCATGAGTGGCA-TTTCCGCTCTGGCCTTGATC 1240
Query 1288 GCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTGTAGAGAGATGGA 1347
| ||||||||||| ||||| ||| | ||||| || || ||||||||||| || || ||||
Sbjct 1241 GGTACATATGGATAATCGGGATGCTATATGCATACTACCACCCAACTGTTGAAAGTTGGA 1300
Query 1348 TGGAGAAGTTAGAGGACTG-TGAAACGAAGAAAAG-A---CTATCCATA-AAG-GCCGCT 1400
|||| || | ||||| | ||| | |||| || | ||||| | | || | ||
Sbjct 1301 TGGATAAACTGGAGGAA-GCTGAGATGAAGTTCAGGATGGCTATCAAAACAACTGTGGC- 1358
Query 1401 ATTGTTA-CTATTA-CTGTGCTTGTTGGCTATGTGTGGTATGAATGTATCTACAAGCTGG 1458
| || || | | || | | | | | || ||| | ||||| || | || ||||||||||
Sbjct 1359 ACTGATAGC-ACTAAC-G-G-T-G--GGATATTTTTGGTACGAGTACATATACAAGCTGG 1411
Query 1459 ACAGGACCAG-TTACAACATGTATCATCCGTACACATCATGGATCCCCATCACTGTTTAC 1517
||| | | | |||||||| |||||||| ||||| || ||||| || || ||||||||
Sbjct 1412 ACAAG-CTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAACTGTTTAT 1470
Query 1518 ATATGCCTTCGGAATTTCACCCACCAGCTT-C-GAAGTGTCT-CA-TTGA-CTCTCTT-T 1571
|| || || ||||| ||||||| ||| | | | | || || || | | | ||| |
Sbjct 1471 ATTTGTCTCCGGAACATCACCCAGT--CTTTCCGC-G-G-CTACAGTTTAAC-C-CTTCT 1523
Query 1572 G-CGTGGCTTGGCAAGATCACTTTAGAGACTTACATTTCCCAGTTTCATATATGGCTAAG 1630
| |||||||||| ||||| || | ||||| || || |||||||||||||||||||| ||
Sbjct 1524 GGCGTGGCTTGGGAAGATAACACTGGAGACATATATCTCCCAGTTTCATATATGGCTCAG 1583
Query 1631 ATCAA-ACATGCCTGACGGGCAACCAAAATGGCTTCTCTCTATTATTCCGG-GATACCCT 1688
||| | | ||||| || ||||| |||| || || ||| |||| |||| | |||||
Sbjct 1584 ATCTGGAGTT-CCTGATGGTCAACCCAAATTACTACTATCTCTTATCCCGGAG-TACCC- 1640
Query 1689 AT-GCTCAATTTCATGCTGACAACTGCTATATACGTC-CTTGTATCTCACCGTCTCTTTG 1746
|| | | || |||||||| || ||| | || |||||| || | ||| | | |||||||
Sbjct 1641 ATTGTTGAACTTCATGCTCACTACTTCGATTTACGTCGCTA-TCTCTTATAGGCTCTTTG 1699
Query 1747 AACTAACCAACACACTCAAGACGGTTTTCGTACCCACAAAAGACAACAAGCGACTCTTCT 1806
| || |||||||| | || || | ||| |||| ||||||||| |||| || | ||| |
Sbjct 1700 AGCTTACCAACACTTTGAAAACAGCCTTCATACCAACAAAAGACGACAAACG-C-CTTGT 1757
Query 1807 CTA 1809
|||
Sbjct 1758 CTA 1760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84255621940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5