BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46350.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494337 jgi|Araly1|494337|fgenesh2_kg.8__153__AT5G46350.1 2002 0.0
> Ahg494337 jgi|Araly1|494337|fgenesh2_kg.8__153__AT5G46350.1
Length=1304
Score = 2002 bits (1084), Expect = 0.0
Identities = 1246/1320 (94%), Gaps = 28/1320 (2%)
Strand=Plus/Plus
Query 1 ACCAAATTTAGACCGACTAAAAAATTCATTAACGT-AAAAAAGttcttgtttctttcttt 59
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ACCAAATTTAGACCGACTAAAAAATTCATTAACGTGTAAAAAGTTC----TTCTTTCTTT 56
Query 60 cttttcttcttcttcacgctcctctctttgtcattttctttttctttctttttggtttaa 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 C--TTCTTCTTCTTCACGCTCCTCTCTTTGTCATTTTCTTTTTCTTTCTTTTTGGTTTAA 114
Query 120 gttttttctctttgttcttcGTCATGTCTCATGAAATCAAAGATCTTAACAACTATCACT 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GATTTTTCTCTTTGTTCTTCGTCATGTCTCATGAAATCAAAGATCTTAACAACTATCACT 174
Query 180 ACACTTCATCGTATAATCATTACAATATCAACAACCAAAATATGATTAATCTCCCTTACG 239
||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 175 ACACTTCATCGTATAATCATTTCAATACCAATAACCAAAATATGATTAATCTCCCTTACG 234
Query 240 TTTCTGGTCCATCTGCTTATAATGCAAACATGATCTCATCATCACAAGTAGGTTTTGATC 299
|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 235 TTTCTGGTCCATCTACTTATAATGCAAACATGATCGCATCATCACAAGCCGGTTTTGATC 294
Query 300 TACCCTCGAAGAACTTGAGTCCTCAAGGAGCCTTCGAGTTGGGTTTCGAGCTTTCTCCAT 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 295 TACCCTCGAAGAACTTGAGTCCTCAAGGAGCGTTCGAGTTGGGTTTCGAGCTTTCTCCAT 354
Query 360 CTTCTTCTGACTTTTTTAATCCTTCCCTCGATCAAGAGAACGGTTTGTATAATGCTTATA 419
|||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 355 CTTCGTCCGACTTTTTTAATCCTTCGATCGATCAAGAGAACGGTTTGTATAATGCTTATA 414
Query 420 ATTATAATAGTAGTCAAAAGAGTCATGAAGTTGTCGGTG-ATGGTTGTGCAACCATTAAG 478
|||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 415 ATTATAATAGTAGTCATAAGAGTCATGAAGTTGTCGGTGGA-GGTTGTGCAACCATTAAG 473
Query 479 AGTGAAGTTAGGGTTTCAGC-ATCTCCTTCTTCAAGTGAGGCCGATCATCATCCAGGAGA 537
||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||
Sbjct 474 AGTGAAGTTAGGGTTTC-GCCATCTCCTTCTTCAAGTGAGGCCGATCATCATCCCGGCGA 532
Query 538 AGATTCCGGCAAGATCCGGAAGAAAAGAGAAGTTCGCGATGGAGGAGAAGATGATCAACG 597
||||||||| ||||||| || ||||||||||| | |||||||||||||||||||||||||
Sbjct 533 AGATTCCGGAAAGATCCAGAGGAAAAGAGAAGCTGGCGATGGAGGAGAAGATGATCAACG 592
Query 598 CTCTCagaaagtagttaaaacaaagaagaaagaggagaagaaaaaagaGCCACGAGTCTC 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTCTCAGAAAGTAGTTAAAACAAAGAAGAAAGAGGAGAAGAAAAAAGAGCCACGAGTCTC 652
Query 658 GTTCATGACTAAGACCGAAGTTGATCATCTCGAAGACGGCTATCGTTGGAGAAAGTATGG 717
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 653 GTTTATGACTAAGACCGAAGTTGATCATCTCGAAGACGGCTATCGTTGGAGAAAGTACGG 712
Query 718 CCAAAAAGCAGTCAAAAACAGTCCTTATCCGAGGAGTTACTATAGATGCACGACTCAGAA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 713 CCAAAAAGCAGTCAAAAACAGTCCTTATCCGAGGAGTTACTATAGATGCACGACGCAGAA 772
Query 778 GTGCAACGTGAAGAAGAGAGTGGAGAGATCTTACCAAGACCCAACGGTCGTCATCACAAC 837
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 773 GTGCAACGTGAAGAAGAGAGTGGAGAGATCTTACCAAGATCCAACGGTCGTGATCACAAC 832
Query 838 CTACGAGAGTCAACACAACCATCCGATCCCGACCAATCGTCGGACAGCAATGTTCTCTGG 897
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 833 CTACGAGAGTCAACACAACCATCCGATCCCGACCAATCGCCGCACGGCAATGTTCTCTGG 892
Query 898 AACCACCGCATCTGATTATAACCCATCATCGTCTCCAATATTCTCCGATCTCATCATCAA 957
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 893 AACCACCGCATCTGATTATAACCCATCGTCATCTCCAATATTTTCCGATCTCATCATCAA 952
Query 958 TACTCCAAGAAGCTTCTCAAATGATGATCTCTTCCGTGTGCCATACGCTAGTGTGAACGT 1017
||||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||
Sbjct 953 TACTCCAAGAAGCTTCTCAAATGATGAACTCTTCCGTGTGCCATACGCTAGTATAAATGT 1012
Query 1018 GAACCCTAGTTATCATCAACAGCAACATGGATTTCATCAACAGGAGAGTGAGTTCGAGCT 1077
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1013 GAACCCTAATTATCATCAACAGCAACAGGGATTCCATCAACAGGAGAGTGAGTTCGAGCT 1072
Query 1078 CTTGAAGGAGATGTTTCCTTCGGTTTTCTTCAAACAAGAGCCTTGATGATATAATATAAT 1137
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1073 CTTGAAGGAGATGTTTCCTTCGGTTTTCTTCAAGCAAGAGCCTTGATGATATAATATAAT 1132
Query 1138 A-TAGAAACAAttttt-ttt-C-T----GCTAAGAAATATAGAACAAAACTTGGATGCAT 1189
| | |||||||||||| ||| | | |||||||||||||||| | |||||||||||||
Sbjct 1133 ACT-GAAACAATTTTTCTTTTCCTTTTTGCTAAGAAATATAGAA-ACAACTTGGATGCAT 1190
Query 1190 AATAAGTGATGATAGTGTTATTTATTTTTTGCATGTATATATTATACATGTTTT-GTTAA 1248
|||||||||| | ||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1191 AATAAGTGAT-A--GTGTTATTTATTTTT-GCATGTATATATTATACATGTTTTTGT-AA 1245
Query 1249 CTAGCTATAGGATATACTGTAGTAATTAAGCATAAATATGGAGTCCCTTCGACTTATTAC 1308
|||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||
Sbjct 1246 CTAGCTATAGGATATACTGTAGTAATTACGCATAA-TATGGAGTCCCTCCGAATTATTAC 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5