BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46370.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494336 jgi|Araly1|494336|fgenesh2_kg.8__152__AT5G46370.1 1921 0.0
Ahg948309 jgi|Araly1|948309|scaffold_800196.1 296 3e-79
> Ahg494336 jgi|Araly1|494336|fgenesh2_kg.8__152__AT5G46370.1
Length=1387
Score = 1921 bits (1040), Expect = 0.0
Identities = 1291/1409 (92%), Gaps = 29/1409 (2%)
Strand=Plus/Plus
Query 24 AACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTAACGACGGTAACGGCGATAACAACG 83
|||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 AACTTTCCGGTTTCCCGGCGAAAACCCAGATGGCAAACAACGGTAACGGCGATAACAACA 60
Query 84 ATGACCCATTACGCCAATACTTGATGAACCCAAGAATCAACCCACCACCACCGTCTCTGT 143
||||||||||||||||||||||||| | || | | ||||||||||||||
Sbjct 61 ATGACCCATTACGCCAATACTTGAT-----------T-AA--C-CGACCACCGTCTCTGT 105
Query 144 TAACATTACCGGAGAACAATGACGTCACAATTCCGATGCCAATAACTCCATTGGAACTT- 202
|| |||||||||||||||| |||||||| ||||||||||||||||| |||| |||| ||
Sbjct 106 TACCATTACCGGAGAACAACGACGTCACGATTCCGATGCCAATAACACCATCGGAA-TTC 164
Query 203 AAAAACCGATTAATCTTCGGTTCATTCGTTCGTTCT-AGAAAAGAATCATCTCTTCCCAT 261
|||||||| ||||||||||| || || ||||||| | |||||| |||||| ||| |||
Sbjct 165 AAAAACCGGTTAATCTTCGGACCACTCCCTCGTTCTCA-AAAAGATTCATCTTTTCTCAT 223
Query 262 CGATGCTCTCTCTCAAAACCCTTCTACGTCATCCTCCGCCACAACCTCATTCTCCGATTC 321
|||||||||||||| |||||||||| |||||||||| || |||||||||||||| || ||
Sbjct 224 CGATGCTCTCTCTCTAAACCCTTCTCCGTCATCCTCTGCTACAACCTCATTCTCTGACTC 283
Query 322 CACAGACCTCCTTCTCCCACTTACGGAGCCTAATAAACCGGTTCGGAAATCTAAACCGAC 381
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 284 CACAGACCTCCTTATCCCACTTACGGAGCCTAATAAACCGACCCGGAAACCTAAACCGAC 343
Query 382 CATCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAATCAACAATATATCTCA 441
| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 344 CGTCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGGAATCAACGATAAATCTCA 403
Query 442 TCCC-AATGATCCCAAAACAGATCAGCAATCTGATTCGAAAACTATTGTAAACCAAGCTG 500
||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 404 -CCCAAATGATCCCAAAACAGAGCAGCAATCTGATTCGAAAAAGATTGTAAAACAAGCTA 462
Query 501 TTGCTTTACTTGTTGTGTATCTATCCTTAGGTGTGCTT-ATCTATTGGTTGAATCGAGAT 559
||||||| |||||||||||||| || ||||||||| || |||||||||||||||||||||
Sbjct 463 TTGCTTTGCTTGTTGTGTATCTCTCTTTAGGTGTG-TTCATCTATTGGTTGAATCGAGAT 521
Query 560 AGCTACAATGTGAAGCAGACTCATCCTGTTGTTGATGCTTTGTACTTTTGTATTGTTACG 619
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 AGCTACAATGTGAAGAAGACTCATCCTGTTGTTGATGCTTTGTACTTTTGTATTGTTACA 581
Query 620 ATGTGTACGATTGGGTATGGAGATATAACGCCGGATAGCGTGGTGACCAAGCTGTTTTCG 679
|||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 582 ATGTGTACAATTGGGTATGGAGACATTACGCCGGATAGCGTGGTGACGAAGCTGTTTTCG 641
Query 680 ATATTTTTTGTGCTTGTTGGGTTTGGTTTTATGGATATATTGCTTAGTGGGATGGTTACT 739
|| || || ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 642 ATCTTGTTCGTGCTCGTTGGGTTTGGTTTTATGGATATATTGCTTAGTGGAATGGTTACT 701
Query 740 TATGTTCTTGATCTTCAAGAAAACTATATGTTGGAAACTGCGAGGAATGAAAGCTTGAAC 799
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 702 TATGTTCTTGATCTTCAAGAAAACTATATGTTAGAAACTGCGAGGAATGAAAGCTTGAAC 761
Query 800 TTGAATGATCGGGACAAAGTGAGATCGTATATAATCGATGTCAAGAAAGGGAGGATGAGG 859
|||||||| ||||| |||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 762 TTGAATGACCGGGAGAAAGCGAAATCGTATATAATTGATGTCAAGAAAGGGAGGATGAGG 821
Query 860 ATTAGGTTGAAAGTAGGGTTGGCATTAGGTGTTGTGGTGTTATGCCTTGGATTTGGAGTT 919
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 822 ATTAGGTTGAAAGTTGGGTTGGCATTGGGTGTTGTGGTGTTATGCCTTGGATTTGGTGTT 881
Query 920 TTGATTATGCATTTTGTTGAGAAAATCGGGTGGTTGGATTCGTTTTATTTCTCGGTTATG 979
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 882 TTGATTATGCATTTTGTTGAGGAAATCGGGTGGTTGGATTCGTTTTATTTCTCGGTTATG 941
Query 980 TCGGTTACTACGGTTGGGTATGGTGACCGGGCTTTTAATACCTTGGCCGGTAGGCTTCTT 1039
|||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 942 TCGGTTACTACGGTTGGGTATGGTGATCGGGCTTTTAATACATTGCCCGGTAGGCTTCTT 1001
Query 1040 GCTGCGATGTGGTTGCTTGTTTCTACTTTAGCGGTTGCTCGAGCGATTTTGTT-TTTGGC 1098
|||||||| |||||||| || ||||||||||| |||||||||||| |||| || ||||||
Sbjct 1002 GCTGCGATATGGTTGCTGGTGTCTACTTTAGCTGTTGCTCGAGCG-TTTTTTTATTTGGC 1060
Query 1099 TGAATCAAGAGTTGATAAGAGGAATAGGGAGCGGGCGAAGAAAGTTCTCGGCGAAAGCAT 1158
|||| |||||||||||||||||||||| |||||||||||||| || || ||||||| |||
Sbjct 1061 TGAAGCAAGAGTTGATAAGAGGAATAGAGAGCGGGCGAAGAAGGTGCTTGGCGAAAACAT 1120
Query 1159 GTCTATCTCTCAGTTCTTAGATGCGGATATCGACTGTAATGGCTGCGTGAGTAAAGCAGA 1218
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1121 GTCTATCTCTCAGTTCTTTGATGCGGATATCGACTACAATGGCTGCGTGAGTAAAGCAGA 1180
Query 1219 GTTTGTGATATACAAACTAAAGAAGATGGACAAAATAACCGAAAAGGACATTAACCCGAT 1278
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1181 GTTTGTGATATACAAACTAAAGAAGATGGAGAAAATAACCGATAAGGACATTAACCCGAT 1240
Query 1279 CGGTTTCCAGTTTGACAAGCTTGACCGAACCAATAGTGGAAGGATTACACTTTTAGATCT 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CGGTTTCCAGTTTGACAAGCTTGACCGAACCAATAGTGGAAGGATTACACTTTTAGATCT 1300
Query 1339 TTTGGAAAGCAGCACAAAAGATTTACCCACTGCAACTTCTATTTA-GTAACACACA-TCA 1396
||||||| |||||| | |||||| ||||||||||||||||||| | |||||||| | |
Sbjct 1301 CTTGGAAACCAGCACCGACGATTTATCCACTGCAACTTCTATTTAAG-AACACACAGT-A 1358
Query 1397 CAACATGATTGAAGATGACAATGATAAAT 1425
|||||||||||||||||||||||| ||||
Sbjct 1359 CAACATGATTGAAGATGACAATGAAAAAT 1387
> Ahg948309 jgi|Araly1|948309|scaffold_800196.1
Length=978
Score = 296 bits (160), Expect = 3e-79
Identities = 273/325 (84%), Gaps = 17/325 (5%)
Strand=Plus/Plus
Query 308 TCATTCTCCGATTCCACAGACCTCCTTCTCCCACTTAC-GGAGCCTAATAAACCGGTTCG 366
|||| |||| ||||||||||||||||| |||||| || ||| |||||||||| ||
Sbjct 233 TCATCCTCCAATTCCACAGACCTCCTTATCCCACCAACGGGA-CCTAATAAACTAACCCG 291
Query 367 GAAATCTAAA-CCGACCATCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAA 425
|||| ||||| | ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 292 GAAACCTAAATCTTCCCA-CAATCTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAA 350
Query 426 TCAACAATATATCTCATCCCAA-TGATCCCAAAACAGATCAGCAATCTGATTCGAAAACT 484
||||| || ||||||| ||||| ||||| | |||||| |||||| |||||||| |
Sbjct 351 TCAACGATGTATCTCA-CCCAAATGATCAGAGAACAGA---GCAATCAAATTCGAAATCC 406
Query 485 ATTGTAA-ACCAAGCTGTTGCTTTACTT-GTTGTGTATCTATCCT-TAGGTGTGCTTATC 541
||||||| || ||||| ||||||| || ||||||||||| || | ||||||||||||||
Sbjct 407 ATTGTAAGAC-AAGCTCTTGCTTTG-TTCGTTGTGTATCTCTC-TGTAGGTGTGCTTATC 463
Query 542 TATTGGTTGAATCGAGATAGCTACAATGTGAAGCAGACTCATCCTGTTGTTGATGCTTTG 601
|||||| |||||||||||| | |||||||||| |||||||||| |||||||| |||| ||
Sbjct 464 TATTGGCTGAATCGAGATAACGACAATGTGAATCAGACTCATCTTGTTGTTGTTGCTCTG 523
Query 602 TACTTTTGTATTGTTA-CGATGTGT 625
|||||||||||||| | | ||||||
Sbjct 524 TACTTTTGTATTGT-AGCAATGTGT 547
Score = 165 bits (89), Expect = 8e-40
Identities = 98/102 (96%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 2 ACCCTAGTTTCAAAAATCTCTCAACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTAAC 61
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 45 ACCCTAGTTT-AAAAATCTCTCAACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTCAC 103
Query 62 GACGGTAACGGCGATAACAACGATGACCCATTACGCCAATAC 103
||||||||||||||||||||| |||||||||||| |||||||
Sbjct 104 GACGGTAACGGCGATAACAACAATGACCCATTACACCAATAC 145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5