BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46370.1 Length=1431 Score E Sequences producing significant alignments: (Bits) Value Ahg494336 jgi|Araly1|494336|fgenesh2_kg.8__152__AT5G46370.1 1921 0.0 Ahg948309 jgi|Araly1|948309|scaffold_800196.1 296 3e-79 > Ahg494336 jgi|Araly1|494336|fgenesh2_kg.8__152__AT5G46370.1 Length=1387 Score = 1921 bits (1040), Expect = 0.0 Identities = 1291/1409 (92%), Gaps = 29/1409 (2%) Strand=Plus/Plus Query 24 AACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTAACGACGGTAACGGCGATAACAACG 83 |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1 AACTTTCCGGTTTCCCGGCGAAAACCCAGATGGCAAACAACGGTAACGGCGATAACAACA 60 Query 84 ATGACCCATTACGCCAATACTTGATGAACCCAAGAATCAACCCACCACCACCGTCTCTGT 143 ||||||||||||||||||||||||| | || | | |||||||||||||| Sbjct 61 ATGACCCATTACGCCAATACTTGAT-----------T-AA--C-CGACCACCGTCTCTGT 105 Query 144 TAACATTACCGGAGAACAATGACGTCACAATTCCGATGCCAATAACTCCATTGGAACTT- 202 || |||||||||||||||| |||||||| ||||||||||||||||| |||| |||| || Sbjct 106 TACCATTACCGGAGAACAACGACGTCACGATTCCGATGCCAATAACACCATCGGAA-TTC 164 Query 203 AAAAACCGATTAATCTTCGGTTCATTCGTTCGTTCT-AGAAAAGAATCATCTCTTCCCAT 261 |||||||| ||||||||||| || || ||||||| | |||||| |||||| ||| ||| Sbjct 165 AAAAACCGGTTAATCTTCGGACCACTCCCTCGTTCTCA-AAAAGATTCATCTTTTCTCAT 223 Query 262 CGATGCTCTCTCTCAAAACCCTTCTACGTCATCCTCCGCCACAACCTCATTCTCCGATTC 321 |||||||||||||| |||||||||| |||||||||| || |||||||||||||| || || Sbjct 224 CGATGCTCTCTCTCTAAACCCTTCTCCGTCATCCTCTGCTACAACCTCATTCTCTGACTC 283 Query 322 CACAGACCTCCTTCTCCCACTTACGGAGCCTAATAAACCGGTTCGGAAATCTAAACCGAC 381 ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| Sbjct 284 CACAGACCTCCTTATCCCACTTACGGAGCCTAATAAACCGACCCGGAAACCTAAACCGAC 343 Query 382 CATCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAATCAACAATATATCTCA 441 | ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| Sbjct 344 CGTCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGGAATCAACGATAAATCTCA 403 Query 442 TCCC-AATGATCCCAAAACAGATCAGCAATCTGATTCGAAAACTATTGTAAACCAAGCTG 500 ||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||| Sbjct 404 -CCCAAATGATCCCAAAACAGAGCAGCAATCTGATTCGAAAAAGATTGTAAAACAAGCTA 462 Query 501 TTGCTTTACTTGTTGTGTATCTATCCTTAGGTGTGCTT-ATCTATTGGTTGAATCGAGAT 559 ||||||| |||||||||||||| || ||||||||| || ||||||||||||||||||||| Sbjct 463 TTGCTTTGCTTGTTGTGTATCTCTCTTTAGGTGTG-TTCATCTATTGGTTGAATCGAGAT 521 Query 560 AGCTACAATGTGAAGCAGACTCATCCTGTTGTTGATGCTTTGTACTTTTGTATTGTTACG 619 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 AGCTACAATGTGAAGAAGACTCATCCTGTTGTTGATGCTTTGTACTTTTGTATTGTTACA 581 Query 620 ATGTGTACGATTGGGTATGGAGATATAACGCCGGATAGCGTGGTGACCAAGCTGTTTTCG 679 |||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||| Sbjct 582 ATGTGTACAATTGGGTATGGAGACATTACGCCGGATAGCGTGGTGACGAAGCTGTTTTCG 641 Query 680 ATATTTTTTGTGCTTGTTGGGTTTGGTTTTATGGATATATTGCTTAGTGGGATGGTTACT 739 || || || ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 642 ATCTTGTTCGTGCTCGTTGGGTTTGGTTTTATGGATATATTGCTTAGTGGAATGGTTACT 701 Query 740 TATGTTCTTGATCTTCAAGAAAACTATATGTTGGAAACTGCGAGGAATGAAAGCTTGAAC 799 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 702 TATGTTCTTGATCTTCAAGAAAACTATATGTTAGAAACTGCGAGGAATGAAAGCTTGAAC 761 Query 800 TTGAATGATCGGGACAAAGTGAGATCGTATATAATCGATGTCAAGAAAGGGAGGATGAGG 859 |||||||| ||||| |||| || |||||||||||| |||||||||||||||||||||||| Sbjct 762 TTGAATGACCGGGAGAAAGCGAAATCGTATATAATTGATGTCAAGAAAGGGAGGATGAGG 821 Query 860 ATTAGGTTGAAAGTAGGGTTGGCATTAGGTGTTGTGGTGTTATGCCTTGGATTTGGAGTT 919 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 822 ATTAGGTTGAAAGTTGGGTTGGCATTGGGTGTTGTGGTGTTATGCCTTGGATTTGGTGTT 881 Query 920 TTGATTATGCATTTTGTTGAGAAAATCGGGTGGTTGGATTCGTTTTATTTCTCGGTTATG 979 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 882 TTGATTATGCATTTTGTTGAGGAAATCGGGTGGTTGGATTCGTTTTATTTCTCGGTTATG 941 Query 980 TCGGTTACTACGGTTGGGTATGGTGACCGGGCTTTTAATACCTTGGCCGGTAGGCTTCTT 1039 |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| Sbjct 942 TCGGTTACTACGGTTGGGTATGGTGATCGGGCTTTTAATACATTGCCCGGTAGGCTTCTT 1001 Query 1040 GCTGCGATGTGGTTGCTTGTTTCTACTTTAGCGGTTGCTCGAGCGATTTTGTT-TTTGGC 1098 |||||||| |||||||| || ||||||||||| |||||||||||| |||| || |||||| Sbjct 1002 GCTGCGATATGGTTGCTGGTGTCTACTTTAGCTGTTGCTCGAGCG-TTTTTTTATTTGGC 1060 Query 1099 TGAATCAAGAGTTGATAAGAGGAATAGGGAGCGGGCGAAGAAAGTTCTCGGCGAAAGCAT 1158 |||| |||||||||||||||||||||| |||||||||||||| || || ||||||| ||| Sbjct 1061 TGAAGCAAGAGTTGATAAGAGGAATAGAGAGCGGGCGAAGAAGGTGCTTGGCGAAAACAT 1120 Query 1159 GTCTATCTCTCAGTTCTTAGATGCGGATATCGACTGTAATGGCTGCGTGAGTAAAGCAGA 1218 |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1121 GTCTATCTCTCAGTTCTTTGATGCGGATATCGACTACAATGGCTGCGTGAGTAAAGCAGA 1180 Query 1219 GTTTGTGATATACAAACTAAAGAAGATGGACAAAATAACCGAAAAGGACATTAACCCGAT 1278 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1181 GTTTGTGATATACAAACTAAAGAAGATGGAGAAAATAACCGATAAGGACATTAACCCGAT 1240 Query 1279 CGGTTTCCAGTTTGACAAGCTTGACCGAACCAATAGTGGAAGGATTACACTTTTAGATCT 1338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1241 CGGTTTCCAGTTTGACAAGCTTGACCGAACCAATAGTGGAAGGATTACACTTTTAGATCT 1300 Query 1339 TTTGGAAAGCAGCACAAAAGATTTACCCACTGCAACTTCTATTTA-GTAACACACA-TCA 1396 ||||||| |||||| | |||||| ||||||||||||||||||| | |||||||| | | Sbjct 1301 CTTGGAAACCAGCACCGACGATTTATCCACTGCAACTTCTATTTAAG-AACACACAGT-A 1358 Query 1397 CAACATGATTGAAGATGACAATGATAAAT 1425 |||||||||||||||||||||||| |||| Sbjct 1359 CAACATGATTGAAGATGACAATGAAAAAT 1387 > Ahg948309 jgi|Araly1|948309|scaffold_800196.1 Length=978 Score = 296 bits (160), Expect = 3e-79 Identities = 273/325 (84%), Gaps = 17/325 (5%) Strand=Plus/Plus Query 308 TCATTCTCCGATTCCACAGACCTCCTTCTCCCACTTAC-GGAGCCTAATAAACCGGTTCG 366 |||| |||| ||||||||||||||||| |||||| || ||| |||||||||| || Sbjct 233 TCATCCTCCAATTCCACAGACCTCCTTATCCCACCAACGGGA-CCTAATAAACTAACCCG 291 Query 367 GAAATCTAAA-CCGACCATCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAA 425 |||| ||||| | ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 292 GAAACCTAAATCTTCCCA-CAATCTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAA 350 Query 426 TCAACAATATATCTCATCCCAA-TGATCCCAAAACAGATCAGCAATCTGATTCGAAAACT 484 ||||| || ||||||| ||||| ||||| | |||||| |||||| |||||||| | Sbjct 351 TCAACGATGTATCTCA-CCCAAATGATCAGAGAACAGA---GCAATCAAATTCGAAATCC 406 Query 485 ATTGTAA-ACCAAGCTGTTGCTTTACTT-GTTGTGTATCTATCCT-TAGGTGTGCTTATC 541 ||||||| || ||||| ||||||| || ||||||||||| || | |||||||||||||| Sbjct 407 ATTGTAAGAC-AAGCTCTTGCTTTG-TTCGTTGTGTATCTCTC-TGTAGGTGTGCTTATC 463 Query 542 TATTGGTTGAATCGAGATAGCTACAATGTGAAGCAGACTCATCCTGTTGTTGATGCTTTG 601 |||||| |||||||||||| | |||||||||| |||||||||| |||||||| |||| || Sbjct 464 TATTGGCTGAATCGAGATAACGACAATGTGAATCAGACTCATCTTGTTGTTGTTGCTCTG 523 Query 602 TACTTTTGTATTGTTA-CGATGTGT 625 |||||||||||||| | | |||||| Sbjct 524 TACTTTTGTATTGT-AGCAATGTGT 547 Score = 165 bits (89), Expect = 8e-40 Identities = 98/102 (96%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 2 ACCCTAGTTTCAAAAATCTCTCAACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTAAC 61 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 45 ACCCTAGTTT-AAAAATCTCTCAACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTCAC 103 Query 62 GACGGTAACGGCGATAACAACGATGACCCATTACGCCAATAC 103 ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 104 GACGGTAACGGCGATAACAACAATGACCCATTACACCAATAC 145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53516794225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5