BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46380.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494335 jgi|Araly1|494335|fgenesh2_kg.8__151__AT5G46380.1 857 0.0
Ahg356363 jgi|Araly1|356363|fgenesh1_pg.C_scaffold_8000150 414 9e-115
> Ahg494335 jgi|Araly1|494335|fgenesh2_kg.8__151__AT5G46380.1
Length=1619
Score = 857 bits (464), Expect = 0.0
Identities = 678/775 (87%), Gaps = 40/775 (5%)
Strand=Plus/Plus
Query 1012 AACTGTGATCATACAGAACCTACTCAAGAAAATCAGTACACGTCTTCATCTGCTACAGAT 1071
||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 877 AACTGTGATCAGACAGAACCTATTCAAGAAAACCAGTACACGTCTTCATCTGCTACAGAT 936
Query 1072 TTCACATTTTATAATAGTCAGCTGTTCAATCCTGTGATGGCTCCTGCAGAACGAAGTCTT 1131
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 937 TTCTCATTTTATAATAGTCAGCTGTTCAATCCTGTGACGGCTCCTTCAGAACGAAGTCTT 996
Query 1132 CAGATGCCAAA-TTTGAATACCTTTCCC-GACTCTATGCATCAACAAGCATTCACAAGGG 1189
|||||| |||| |||||||||| ||||| ||| |||||||||||||||||| ||| ||||
Sbjct 997 CAGATG-CAAAGTTTGAATACC-TTCCCTGACACTATGCATCAACAAGCATACACGAGGG 1054
Query 1190 AACATGTGAATGCTTGGTACTCGGCTTCTCCTC-TCAATCAGTCAATGTATGCTGCCTCT 1248
||| || | || ||||||||| ||||||||||| | |||||||||||| || ||| |||
Sbjct 1055 AAC-TG-G-ATCCTTGGTACTTGGCTTCTCCTCAT-AATCAGTCAATGCCTGGTGCATCT 1110
Query 1249 TCACTTGGTCGTAGGCTACCAGTTTCCATGACCGAGATGAATCGACAAGCCATGAACCAC 1308
|||||||||||||||||| |||||||||||| | || || ||| | ||
Sbjct 1111 TCACTTGGTCGTAGGCTATCAGTTTCCATGA-C---------CG---AG--ATG-A--AC 1152
Query 1309 CACCTTTACCCTCAGCCTAATGTTCCTTCAGAGCATTATGGTAATATGATGAACTATCCT 1368
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1153 CACCTTTACTCTCAGCCTAATGTTCCTTCAGAGCATTATAGTAATATGATGAACTGTCCT 1212
Query 1369 TACTCTCTGCCAACACAGAATGATAATACCTACGACATGCCAGCATCAGCATTTCAGCAA 1428
|||||||||||||||||| | | | ||||||||||||||||| |||||||||||| ||||
Sbjct 1213 TACTCTCTGCCAACACAG-A-G-TGATACCTACGACATGCCAACATCAGCATTTCGGCAA 1269
Query 1429 CATGGTGGTCTTAACAACGACGCCTACCATCTTCGTCCTTTAGTTGCACCGCTTCCTTTG 1488
||||||||| ||||||| ||||||||||||||| ||||||||||||| | | |||||||
Sbjct 1270 CATGGTGGTGGTAACAACAACGCCTACCATCTTCATCCTTTAGTTGCA-C-C-TCCTTTG 1326
Query 1489 CACAGAGACAGTTATCCATGTCCACCAACTCTCGCTGCTGGTCCTTACACTCGTAGTTCT 1548
|||||| ||||||||||||||| ||||||| ||||||||||| ||| |||||| ||||||
Sbjct 1327 CACAGAAACAGTTATCCATGTCTACCAACTGTCGCTGCTGGTACTTCCACTCGGAGTTCT 1386
Query 1549 GCTTACGGTTCCGCTAATGGTCCGGCTTACGATTCTGCTTACGGTTGTGGCATGTTAAGT 1608
|||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||| |||
Sbjct 1387 GCTTACGGTTCCACTAATGGTTCGGCTTACGATTCTGCTTACAGTTTTGGCATGTTGAGT 1446
Query 1609 GATCATAACACTGCGAACTTGAGGTTTGACG-ATGAAGATGACTTCCACACACGGTTTAG 1667
| ||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||
Sbjct 1447 G---ATAACACTGCGAACTTGAGGTTTGA-GTATGAAGATGACTTGCACACACGATTTAG 1502
Query 1668 CAATCACTTGGCATCACTTCAGCATCAGAATGGGACCTCAAGTATGTGGACTCCTCCAGG 1727
|||||||||||||||||||||||||||| | ||| ||||| |||||||||||||| |||
Sbjct 1503 CAATCACTTGGCATCACTTCAGCATCAGGGTAGGAACTCAAATATGTGGACTCCTCAAGG 1562
Query 1728 GCTA-AACGAATCAGGAAGCAGTTATTACCGCTTATACTCGGGTCCTCAGAATCA 1781
| | ||||| ||| |||| | ||||| | || ||| | ||||| |||||||||
Sbjct 1563 AC-ACAACGAGTCAAGAAGGAATTATTGCAGCGTATTCCCGGGTGATCAGAATCA 1616
Score = 237 bits (128), Expect = 2e-61
Identities = 418/542 (77%), Gaps = 83/542 (15%)
Strand=Plus/Plus
Query 475 TCAGCTTCATCAAAAGATAGTGTAACTAAAGCTCCTGTCAAGGATGATTGCCTCTTACCT 534
||||||||| ||||||| ||||||||||||||||||||||| | || || ||| |
Sbjct 385 TCAGCTTCACCAAAAGAGAGTGTAACTAAAGCTCCTGTCAA-G--GA-TG-----TACAT 435
Query 535 GAGAAGCCAGTTGCTCCTAATCCATTTTCTAACTCATTTAATGAGCCTGCTGCTAGAAGA 594
||||| ||||||| |||||||| ||| ||||||||||||| |||| ||||||||||||||
Sbjct 436 GAGAATCCAGTTGTTCCTAATCAATTCTCTAACTCATTTATTGAGTCTGCTGCTAGAAGA 495
Query 595 GATCAACTTCAAGAATCTCCTTCGGTATCCAACCAAATATTTCGCAATGGAGGCTCACAT 654
|||||||||||||||||| |||| ||||||| |||||| | | || | ||
Sbjct 496 GATCAACTTCAAGAATCTGCTTCAGTATCCACCCAAAT-----G---T-----CT-A-AT 540
Query 655 TTGTTGCGTGACAATTACAATAACAAAAATGATGAGACTAACCAAGTGCAAAGAAGTTCT 714
| ||||||||||||||||||| ||||||||| |||||||| ||||| |||||
Sbjct 541 --G-------ACAATTACAATAACAAAAACGATGAGACTTACCAAGTGAAAAGATGTTCT 591
Query 715 TGTGAGAACAATCGAACCAAAGATCCGT-CGGTGCCTGTTAATTCAGACCAATGTAATAG 773
| |||||||||||||||||||||||| | || ||| | |||| |||||||| || ||
Sbjct 592 TTTGAGAACAATCGAACCAAAGATCCTTTCGC-GCCAGCAAATTTAGACCAATATATTAA 650
Query 774 CGACTTACAGAATTTGA-AGTTTGGTCGTTTTGGTTCTGGCGAAGTACATATG-ATTATG 831
||| ||| |||| |||| | ||||| |||||||||||||| || || | ||| || ||
Sbjct 651 CGAGTTAAAGAAATTGAGA-TTTGGACGTTTTGGTTCTGG-GA--TA-A-ATGGATC-TG 703
Query 832 AAC-AATCAAAGCTTGGCTCTCCCATCACAGTTCTTGAATGAT--C-C------T----- 876
| || || ||| | ||||||||||||||||||||||||| | | |
Sbjct 704 G-CGAA-CATAGCA-G--TCTCCCATCACAGTTCTTGAATGATGACTCAGAAGATATATC 758
Query 877 -G------CAGATGATTTGTCTTTCAGACACCTGAACTTAAGAGATG---A-----A-GA 920
| |||||||||||||| |||||| ||||||||||||||||| | | ||
Sbjct 759 CGGTTTTGCAGATGATTTGTCTCTCAGACGCCTGAACTTAAGAGATGGTGAGTGCCATGA 818
Query 921 -G-G-AAGAACAACAACCAAGAATGAATGTTGCTAATGAAAAAATGGCATATGAAGTCAA 977
| | || ||||||||||||| ||||||||||| |||||| |||||||||||||| ||||
Sbjct 819 AGAGGAACAACAACAACCAAGGATGAATGTTGCAAATGAACAAATGGCATATGAAATCAA 878
Query 978 CT 979
||
Sbjct 879 CT 880
> Ahg356363 jgi|Araly1|356363|fgenesh1_pg.C_scaffold_8000150
Length=3144
Score = 414 bits (224), Expect = 9e-115
Identities = 441/540 (82%), Gaps = 38/540 (7%)
Strand=Plus/Plus
Query 1283 AGATGAATCGACAAGCCATGAACCACCACCTTTACCCTCAGCCTA--AT-GTTCCTTCAG 1339
||||||||| |||||||||||| || ||| |||| ||||||||| || ||||||||||
Sbjct 2588 AGATGAATCAACAAGCCATGAA-CA--ACCATTACTCTCAGCCTATTATGGTTCCTTCAG 2644
Query 1340 AGCATTATGGTAATATGATGAACTATCCTTACTCTCTGCCAACACAGAATGATAATACCT 1399
| || |||||||||||||||||||||| ||||||| | |||||||||||| ||||
Sbjct 2645 GGAATAATGGTAATATGATGAACTATCCGTACTCTCAGACAACACAGAATG---GCACCT 2701
Query 1400 ACGACATGCCAGCATCAGCATTTCAGCAACATGGTGGTCTTAACAACGACGC--CTACCA 1457
|| ||||| || | ||||||| ||| ||||||||||||| ||||||| | || |||||
Sbjct 2702 ACAACATGTCACCGTCAGCATCTCACCAACATGGTGGTCGTAACAAC-A-GCAGTTACCA 2759
Query 1458 TCTTCG-TCCTTTAGTTGCACCGCTTCCTTTGC-ACAGAGACAGT-TATCCATGTCCACC 1514
|||| | | ||||| |||||||||||| | | ||||| ||||| | || | |||| |
Sbjct 2760 TCTTAGAT-CTTTAACTGCACCGCTTCC-TCACTACAGAAACAGTGT-TCTTTCTCCATC 2816
Query 1515 AACT-CTCGCTGCTGGTCCTTACACTCGTAGTTCTGCTTACGGTTCCGCTAATGGTCCGG 1573
|| || || || ||||| ||||| ||||| |||||||||||| |||| | ||
Sbjct 2817 TGCTGTTC-CTTTTGTTCCTTCCACTCACAGTTCCGCTTACGGTTCCACTAA---T--GG 2870
Query 1574 CTTACGATTCTGCTTACGGTTGTGGCATGTTAAGTGATCATAACACTGCGAACTTGAGGT 1633
|| ||| || | | |||| ||||||||| |||| ||||| || | ||||||||||
Sbjct 2871 -TT-CGA--CT-C--ATGGTTTTGGCATGTTGAGTG---ATAACGCTCCAAACTTGAGGT 2920
Query 1634 TTGACG-ATGAAGATGACTTCCACACACGGTTTAGCAATCACTTGGCATCACTTCAGCAT 1692
|||| | ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 2921 TTGA-GTATGAAGATGACTTCCACTCACAGTTTAGCAATCACTTGGCAACACTTCAGCAT 2979
Query 1693 CAGAATGGGACCTCAAGTATGTGGACTCCTCCAGGGCTAAACGAATCAGGAAGCAGTTAT 1752
|||||||||||| | |||||||||||||||| ||| || ||||| |||||||||| ||||
Sbjct 2980 CAGAATGGGACCCCTAGTATGTGGACTCCTCAAGGACTCAACGACTCAGGAAGCACTTAT 3039
Query 1753 TACCGCTTATACTCGGGTCCTCAGAATCAGCAGTCAGAGAGTTTCAGACGTAGCCAACAA 1812
||| | |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct 3040 TACAGGTTATACTCGGGTCCTCAGAATCAGCAGTCACAGAGTTTGAGACATAGCCAACAA 3099
Score = 267 bits (144), Expect = 3e-70
Identities = 185/204 (91%), Gaps = 6/204 (3%)
Strand=Plus/Plus
Query 15 CATTGAA-GTTAACGCAATCCCGGAGTATACGAGAGCAATAGTAC-GGTCTATGAAGGAA 72
|||| || |||||| | ||||||||| || |||||| ||| |||| || ||||||||||
Sbjct 72 CATT-AACGTTAACTCTATCCCGGAGAATTCGAGAGAAATCGTACAGG-CTATGAAGGAG 129
Query 73 ATCGTGAATTGCTCCGAACAAGAGATTTACGCA-ATGCTTGTTGAATGCAACATGAACGC 131
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 130 ATCGTGAATTGCTCCGAACAAGAGATTTACG-ATATGCTTGTAGAATGCAACATGAACGC 188
Query 132 TGACGAAGCCATCACTCGACTTCTTTCTCAAGATAGTTTCCAGGAAGTGAAGAGTAAACG 191
|||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 189 TGACGAAGCCATGAATCGTCTTCTTTCTCAAGATAGTTTTCAGGAAGTGAAGAGTAAACG 248
Query 192 AGACAAGAAGAAAGAGGCCAAGGA 215
| ||||||||||||||||||||||
Sbjct 249 AAACAAGAAGAAAGAGGCCAAGGA 272
Score = 152 bits (82), Expect = 8e-36
Identities = 113/128 (88%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 347 CTGGTTCTTCATTGAACAGTGCTATATCAAATGTTGAAACTAAGAGAGTGCCAACAAGCT 406
||||| || |||||||||| | ||| ||||||||||||||||||| |||||| |||||
Sbjct 686 CTGGTCCTCCATTGAACAGAAATGTATTAAATGTTGAAACTAAGAGAATGCCAAAAAGCT 745
Query 407 CAGAG-GAAGCAGTTCCTTCGTTATCTGTGCCATCTTCTACGTTGGTAACTGCTTTGGGA 465
||| | |||||||||||||||||||||||||||||||||| |||| || |||||| ||||
Sbjct 746 CAG-GTGAAGCAGTTCCTTCGTTATCTGTGCCATCTTCTAGGTTGATACCTGCTTGGGGA 804
Query 466 TGTGGTAC 473
||||||||
Sbjct 805 TGTGGTAC 812
Score = 97.1 bits (52), Expect = 4e-19
Identities = 63/68 (93%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 477 AGCTTCATCAAAAGATAGTGTAACTAAAGCTCCTGTCAAGGATGATTG-CCTCTTACCTG 535
|||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 855 AGCTTCATCAAACGAGAGTGTAACTAAAGCTCCTGTCAAGGATGATTGTCC-CTTACCTG 913
Query 536 AGAAGCCA 543
||| ||||
Sbjct 914 AGAGGCCA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5