BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46380.1 Length=1824 Score E Sequences producing significant alignments: (Bits) Value Ahg494335 jgi|Araly1|494335|fgenesh2_kg.8__151__AT5G46380.1 857 0.0 Ahg356363 jgi|Araly1|356363|fgenesh1_pg.C_scaffold_8000150 414 9e-115 > Ahg494335 jgi|Araly1|494335|fgenesh2_kg.8__151__AT5G46380.1 Length=1619 Score = 857 bits (464), Expect = 0.0 Identities = 678/775 (87%), Gaps = 40/775 (5%) Strand=Plus/Plus Query 1012 AACTGTGATCATACAGAACCTACTCAAGAAAATCAGTACACGTCTTCATCTGCTACAGAT 1071 ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 877 AACTGTGATCAGACAGAACCTATTCAAGAAAACCAGTACACGTCTTCATCTGCTACAGAT 936 Query 1072 TTCACATTTTATAATAGTCAGCTGTTCAATCCTGTGATGGCTCCTGCAGAACGAAGTCTT 1131 ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 937 TTCTCATTTTATAATAGTCAGCTGTTCAATCCTGTGACGGCTCCTTCAGAACGAAGTCTT 996 Query 1132 CAGATGCCAAA-TTTGAATACCTTTCCC-GACTCTATGCATCAACAAGCATTCACAAGGG 1189 |||||| |||| |||||||||| ||||| ||| |||||||||||||||||| ||| |||| Sbjct 997 CAGATG-CAAAGTTTGAATACC-TTCCCTGACACTATGCATCAACAAGCATACACGAGGG 1054 Query 1190 AACATGTGAATGCTTGGTACTCGGCTTCTCCTC-TCAATCAGTCAATGTATGCTGCCTCT 1248 ||| || | || ||||||||| ||||||||||| | |||||||||||| || ||| ||| Sbjct 1055 AAC-TG-G-ATCCTTGGTACTTGGCTTCTCCTCAT-AATCAGTCAATGCCTGGTGCATCT 1110 Query 1249 TCACTTGGTCGTAGGCTACCAGTTTCCATGACCGAGATGAATCGACAAGCCATGAACCAC 1308 |||||||||||||||||| |||||||||||| | || || ||| | || Sbjct 1111 TCACTTGGTCGTAGGCTATCAGTTTCCATGA-C---------CG---AG--ATG-A--AC 1152 Query 1309 CACCTTTACCCTCAGCCTAATGTTCCTTCAGAGCATTATGGTAATATGATGAACTATCCT 1368 ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1153 CACCTTTACTCTCAGCCTAATGTTCCTTCAGAGCATTATAGTAATATGATGAACTGTCCT 1212 Query 1369 TACTCTCTGCCAACACAGAATGATAATACCTACGACATGCCAGCATCAGCATTTCAGCAA 1428 |||||||||||||||||| | | | ||||||||||||||||| |||||||||||| |||| Sbjct 1213 TACTCTCTGCCAACACAG-A-G-TGATACCTACGACATGCCAACATCAGCATTTCGGCAA 1269 Query 1429 CATGGTGGTCTTAACAACGACGCCTACCATCTTCGTCCTTTAGTTGCACCGCTTCCTTTG 1488 ||||||||| ||||||| ||||||||||||||| ||||||||||||| | | ||||||| Sbjct 1270 CATGGTGGTGGTAACAACAACGCCTACCATCTTCATCCTTTAGTTGCA-C-C-TCCTTTG 1326 Query 1489 CACAGAGACAGTTATCCATGTCCACCAACTCTCGCTGCTGGTCCTTACACTCGTAGTTCT 1548 |||||| ||||||||||||||| ||||||| ||||||||||| ||| |||||| |||||| Sbjct 1327 CACAGAAACAGTTATCCATGTCTACCAACTGTCGCTGCTGGTACTTCCACTCGGAGTTCT 1386 Query 1549 GCTTACGGTTCCGCTAATGGTCCGGCTTACGATTCTGCTTACGGTTGTGGCATGTTAAGT 1608 |||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||| ||| Sbjct 1387 GCTTACGGTTCCACTAATGGTTCGGCTTACGATTCTGCTTACAGTTTTGGCATGTTGAGT 1446 Query 1609 GATCATAACACTGCGAACTTGAGGTTTGACG-ATGAAGATGACTTCCACACACGGTTTAG 1667 | ||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||| Sbjct 1447 G---ATAACACTGCGAACTTGAGGTTTGA-GTATGAAGATGACTTGCACACACGATTTAG 1502 Query 1668 CAATCACTTGGCATCACTTCAGCATCAGAATGGGACCTCAAGTATGTGGACTCCTCCAGG 1727 |||||||||||||||||||||||||||| | ||| ||||| |||||||||||||| ||| Sbjct 1503 CAATCACTTGGCATCACTTCAGCATCAGGGTAGGAACTCAAATATGTGGACTCCTCAAGG 1562 Query 1728 GCTA-AACGAATCAGGAAGCAGTTATTACCGCTTATACTCGGGTCCTCAGAATCA 1781 | | ||||| ||| |||| | ||||| | || ||| | ||||| ||||||||| Sbjct 1563 AC-ACAACGAGTCAAGAAGGAATTATTGCAGCGTATTCCCGGGTGATCAGAATCA 1616 Score = 237 bits (128), Expect = 2e-61 Identities = 418/542 (77%), Gaps = 83/542 (15%) Strand=Plus/Plus Query 475 TCAGCTTCATCAAAAGATAGTGTAACTAAAGCTCCTGTCAAGGATGATTGCCTCTTACCT 534 ||||||||| ||||||| ||||||||||||||||||||||| | || || ||| | Sbjct 385 TCAGCTTCACCAAAAGAGAGTGTAACTAAAGCTCCTGTCAA-G--GA-TG-----TACAT 435 Query 535 GAGAAGCCAGTTGCTCCTAATCCATTTTCTAACTCATTTAATGAGCCTGCTGCTAGAAGA 594 ||||| ||||||| |||||||| ||| ||||||||||||| |||| |||||||||||||| Sbjct 436 GAGAATCCAGTTGTTCCTAATCAATTCTCTAACTCATTTATTGAGTCTGCTGCTAGAAGA 495 Query 595 GATCAACTTCAAGAATCTCCTTCGGTATCCAACCAAATATTTCGCAATGGAGGCTCACAT 654 |||||||||||||||||| |||| ||||||| |||||| | | || | || Sbjct 496 GATCAACTTCAAGAATCTGCTTCAGTATCCACCCAAAT-----G---T-----CT-A-AT 540 Query 655 TTGTTGCGTGACAATTACAATAACAAAAATGATGAGACTAACCAAGTGCAAAGAAGTTCT 714 | ||||||||||||||||||| ||||||||| |||||||| ||||| ||||| Sbjct 541 --G-------ACAATTACAATAACAAAAACGATGAGACTTACCAAGTGAAAAGATGTTCT 591 Query 715 TGTGAGAACAATCGAACCAAAGATCCGT-CGGTGCCTGTTAATTCAGACCAATGTAATAG 773 | |||||||||||||||||||||||| | || ||| | |||| |||||||| || || Sbjct 592 TTTGAGAACAATCGAACCAAAGATCCTTTCGC-GCCAGCAAATTTAGACCAATATATTAA 650 Query 774 CGACTTACAGAATTTGA-AGTTTGGTCGTTTTGGTTCTGGCGAAGTACATATG-ATTATG 831 ||| ||| |||| |||| | ||||| |||||||||||||| || || | ||| || || Sbjct 651 CGAGTTAAAGAAATTGAGA-TTTGGACGTTTTGGTTCTGG-GA--TA-A-ATGGATC-TG 703 Query 832 AAC-AATCAAAGCTTGGCTCTCCCATCACAGTTCTTGAATGAT--C-C------T----- 876 | || || ||| | ||||||||||||||||||||||||| | | | Sbjct 704 G-CGAA-CATAGCA-G--TCTCCCATCACAGTTCTTGAATGATGACTCAGAAGATATATC 758 Query 877 -G------CAGATGATTTGTCTTTCAGACACCTGAACTTAAGAGATG---A-----A-GA 920 | |||||||||||||| |||||| ||||||||||||||||| | | || Sbjct 759 CGGTTTTGCAGATGATTTGTCTCTCAGACGCCTGAACTTAAGAGATGGTGAGTGCCATGA 818 Query 921 -G-G-AAGAACAACAACCAAGAATGAATGTTGCTAATGAAAAAATGGCATATGAAGTCAA 977 | | || ||||||||||||| ||||||||||| |||||| |||||||||||||| |||| Sbjct 819 AGAGGAACAACAACAACCAAGGATGAATGTTGCAAATGAACAAATGGCATATGAAATCAA 878 Query 978 CT 979 || Sbjct 879 CT 880 > Ahg356363 jgi|Araly1|356363|fgenesh1_pg.C_scaffold_8000150 Length=3144 Score = 414 bits (224), Expect = 9e-115 Identities = 441/540 (82%), Gaps = 38/540 (7%) Strand=Plus/Plus Query 1283 AGATGAATCGACAAGCCATGAACCACCACCTTTACCCTCAGCCTA--AT-GTTCCTTCAG 1339 ||||||||| |||||||||||| || ||| |||| ||||||||| || |||||||||| Sbjct 2588 AGATGAATCAACAAGCCATGAA-CA--ACCATTACTCTCAGCCTATTATGGTTCCTTCAG 2644 Query 1340 AGCATTATGGTAATATGATGAACTATCCTTACTCTCTGCCAACACAGAATGATAATACCT 1399 | || |||||||||||||||||||||| ||||||| | |||||||||||| |||| Sbjct 2645 GGAATAATGGTAATATGATGAACTATCCGTACTCTCAGACAACACAGAATG---GCACCT 2701 Query 1400 ACGACATGCCAGCATCAGCATTTCAGCAACATGGTGGTCTTAACAACGACGC--CTACCA 1457 || ||||| || | ||||||| ||| ||||||||||||| ||||||| | || ||||| Sbjct 2702 ACAACATGTCACCGTCAGCATCTCACCAACATGGTGGTCGTAACAAC-A-GCAGTTACCA 2759 Query 1458 TCTTCG-TCCTTTAGTTGCACCGCTTCCTTTGC-ACAGAGACAGT-TATCCATGTCCACC 1514 |||| | | ||||| |||||||||||| | | ||||| ||||| | || | |||| | Sbjct 2760 TCTTAGAT-CTTTAACTGCACCGCTTCC-TCACTACAGAAACAGTGT-TCTTTCTCCATC 2816 Query 1515 AACT-CTCGCTGCTGGTCCTTACACTCGTAGTTCTGCTTACGGTTCCGCTAATGGTCCGG 1573 || || || || ||||| ||||| ||||| |||||||||||| |||| | || Sbjct 2817 TGCTGTTC-CTTTTGTTCCTTCCACTCACAGTTCCGCTTACGGTTCCACTAA---T--GG 2870 Query 1574 CTTACGATTCTGCTTACGGTTGTGGCATGTTAAGTGATCATAACACTGCGAACTTGAGGT 1633 || ||| || | | |||| ||||||||| |||| ||||| || | |||||||||| Sbjct 2871 -TT-CGA--CT-C--ATGGTTTTGGCATGTTGAGTG---ATAACGCTCCAAACTTGAGGT 2920 Query 1634 TTGACG-ATGAAGATGACTTCCACACACGGTTTAGCAATCACTTGGCATCACTTCAGCAT 1692 |||| | ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| Sbjct 2921 TTGA-GTATGAAGATGACTTCCACTCACAGTTTAGCAATCACTTGGCAACACTTCAGCAT 2979 Query 1693 CAGAATGGGACCTCAAGTATGTGGACTCCTCCAGGGCTAAACGAATCAGGAAGCAGTTAT 1752 |||||||||||| | |||||||||||||||| ||| || ||||| |||||||||| |||| Sbjct 2980 CAGAATGGGACCCCTAGTATGTGGACTCCTCAAGGACTCAACGACTCAGGAAGCACTTAT 3039 Query 1753 TACCGCTTATACTCGGGTCCTCAGAATCAGCAGTCAGAGAGTTTCAGACGTAGCCAACAA 1812 ||| | |||||||||||||||||||||||||||||| ||||||| |||| |||||||||| Sbjct 3040 TACAGGTTATACTCGGGTCCTCAGAATCAGCAGTCACAGAGTTTGAGACATAGCCAACAA 3099 Score = 267 bits (144), Expect = 3e-70 Identities = 185/204 (91%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 15 CATTGAA-GTTAACGCAATCCCGGAGTATACGAGAGCAATAGTAC-GGTCTATGAAGGAA 72 |||| || |||||| | ||||||||| || |||||| ||| |||| || |||||||||| Sbjct 72 CATT-AACGTTAACTCTATCCCGGAGAATTCGAGAGAAATCGTACAGG-CTATGAAGGAG 129 Query 73 ATCGTGAATTGCTCCGAACAAGAGATTTACGCA-ATGCTTGTTGAATGCAACATGAACGC 131 ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| Sbjct 130 ATCGTGAATTGCTCCGAACAAGAGATTTACG-ATATGCTTGTAGAATGCAACATGAACGC 188 Query 132 TGACGAAGCCATCACTCGACTTCTTTCTCAAGATAGTTTCCAGGAAGTGAAGAGTAAACG 191 |||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 189 TGACGAAGCCATGAATCGTCTTCTTTCTCAAGATAGTTTTCAGGAAGTGAAGAGTAAACG 248 Query 192 AGACAAGAAGAAAGAGGCCAAGGA 215 | |||||||||||||||||||||| Sbjct 249 AAACAAGAAGAAAGAGGCCAAGGA 272 Score = 152 bits (82), Expect = 8e-36 Identities = 113/128 (88%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 347 CTGGTTCTTCATTGAACAGTGCTATATCAAATGTTGAAACTAAGAGAGTGCCAACAAGCT 406 ||||| || |||||||||| | ||| ||||||||||||||||||| |||||| ||||| Sbjct 686 CTGGTCCTCCATTGAACAGAAATGTATTAAATGTTGAAACTAAGAGAATGCCAAAAAGCT 745 Query 407 CAGAG-GAAGCAGTTCCTTCGTTATCTGTGCCATCTTCTACGTTGGTAACTGCTTTGGGA 465 ||| | |||||||||||||||||||||||||||||||||| |||| || |||||| |||| Sbjct 746 CAG-GTGAAGCAGTTCCTTCGTTATCTGTGCCATCTTCTAGGTTGATACCTGCTTGGGGA 804 Query 466 TGTGGTAC 473 |||||||| Sbjct 805 TGTGGTAC 812 Score = 97.1 bits (52), Expect = 4e-19 Identities = 63/68 (93%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 477 AGCTTCATCAAAAGATAGTGTAACTAAAGCTCCTGTCAAGGATGATTG-CCTCTTACCTG 535 |||||||||||| || |||||||||||||||||||||||||||||||| || |||||||| Sbjct 855 AGCTTCATCAAACGAGAGTGTAACTAAAGCTCCTGTCAAGGATGATTGTCC-CTTACCTG 913 Query 536 AGAAGCCA 543 ||| |||| Sbjct 914 AGAGGCCA 921 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68486260510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5