BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46390.2
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494333 jgi|Araly1|494333|fgenesh2_kg.8__149__AT5G46390.2 2451 0.0
> Ahg494333 jgi|Araly1|494333|fgenesh2_kg.8__149__AT5G46390.2
Length=1592
Score = 2451 bits (1327), Expect = 0.0
Identities = 1482/1559 (95%), Gaps = 2/1559 (0%)
Strand=Plus/Plus
Query 3 TTTGAAGCTTGACCGTTAAACAAAGATGAGGCTTTTGCTTCCATTTTCCTCGCCGTTATC 62
|||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TTTGAATCTTGACCGTTAAAAAAAGATGAGGCTTTTGCTTCCATTTTCATCGCCGTTATC 60
Query 63 CGCCACGTCATCACCGTCGACGCCGCAATTTATCCCTGAACT-TCCACCTCCGTCTCAAT 121
|||||||||||||||| |||||||||||||| |||| ||| | | ||| |||||||||||
Sbjct 61 CGCCACGTCATCACCGGCGACGCCGCAATTTCTCCCGGAA-TATACACTTCCGTCTCAAT 119
Query 122 TTGACTACTCGGGTCTAACTAAAATTCTTAAAAAATCGGTAATCGGAACCCTAACCGGAG 181
| |||||||| | || | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 TCGACTACTCTGCCCTTAGTAAAATTCTCAAAAAATCGGTAATCGGAACCCTAACCGGAG 179
Query 182 CTCTATCGCTCACTCTCGTTTTCTCGTCGCCGATTTCCTCCGTTGCTGCTACTAATGATC 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCTCTCGCTCACTCTCGTTTTCTCGTCGCCGATTTCCTCCGTTGCTGCTACTAATGATC 239
Query 242 CTTATCTCTCTGTCAATCCTCCTTCGTCATCGTTTGAATCTTCTCTGAATCACTTCGATT 301
||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 240 CTTATCTCTCTCTCAATCCTCCTTCTTCATCGTTTGAATCTTCACTGAATCACTTTGATT 299
Query 302 CGGCTCCTGAAGATTGTCCTAATGAGGAAGAAGCTGATACTGAGATTCAAGATGATGACA 361
|| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 CGTCTCCGGAGGATTGTCCTAACGAGGAAGAAGCTGATACTGAGATTCAAGATGATGACT 359
Query 362 TTGAGCCTCAGTTAGTAACTAATGAAGGGATTGTTGAAGAAGCTTGGGAGATTGTTAATG 421
|| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 360 TTAAGCCTCAATTAGTAACCAATGAAGGGATTGTTGAAGAAGCTTGGGAGATTGTTAACG 419
Query 422 GTGCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAGAAACAGAAGG 481
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 GTGCCTTTCTCGATACTCGTAGCCATAGTTGGACTCCTGAAACTTGGCAGAAACAGAAGG 479
Query 482 ATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGCTCATGAAGTGATTAAGAACA 541
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 480 ATGATATATTGGCTAGTCCAATTAAGAGTAGATCAAAGGCTCATGAAGTGATTAAGAATA 539
Query 542 TGTTGGCTAGTTTGGGTGATCAATACACTCGATTCCTATCACCAGATGAGTTTTCTAGGA 601
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 TGTTGGCAAGTTTGGGTGATCAATACACTCGATTTCTATCACCAGATGAGTTTTCTAGGA 599
Query 602 TGTCGAAGTATGACATTACTGGTATTGGAATTAACCTTAGAGAAGTTTCTGATGGTGGTG 661
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TGTCGAAGTATGACATTACTGGTATTGGAATAAACCTTAGAGAAGTTTCTGATGGTGGTG 659
Query 662 GAAATGTAAAGTTGAAGGTTCTTGGTCTTGTATTGGACAGTGCTGCTGATATTGCTGGTG 721
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 GAAATGTAAAGTTGAAGGTTCTTGGTCTTGTATTGGACAGTCCTGCTGATATTGCTGGTG 719
Query 722 TGAAACAGGGAGATGAAATTCTGGCTGTCAATGGAATGGATGTCAGTGGGAAATCATCCT 781
|||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
Sbjct 720 TGAAACAGGGAGATGAAATTCTTGCTGTCAATGGAATAGATGTTAGTGGGAAATCATCAT 779
Query 782 TTGAAGTATCGTCTTTGTTACAAGGCCCTAGTAAAACTTTTGTAGTTCTCAAGGTGAAGC 841
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 TTGAAGTATCATCTTTGTTGCAAGGCCCTAGTAAAACTTTTGTGGTTCTCAAGGTGAAGC 839
Query 842 ATGGGAAGTGTGGACCTGTTAAGTCTCTGAAAATCCAGAGACAAGTTAATGCACAGACCC 901
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 840 ATGGGAAGTGTGGACCTGTTAAGTCTCTTAAAATCCAGAGACAAGTTAATGCACTGACCC 899
Query 902 CAGTTTCTTACCGGTTGGAAAAAGTTGACAATGGAACAGTCTCTGTCGGGTATATTCGTC 961
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 CAGTCTCTTATCGGTTGGAAAAAGTTGACAATGGAACAGTCTCTGTCGGGTATATTCGCC 959
Query 962 TAAAAGAGTTCAATGCGCTGGCTAGAAAAGATTTGGTGATTGCAATGAAACGACTCCTAG 1021
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 TGAAAGAGTTCAATGCTCTGGCTAGAAAAGATTTGGTGATTGCAATGAAACGACTCCAAG 1019
Query 1022 ACAAGGGTGCGTCTTATTTTGTAATGGATCTTAGAGATAACCTTGGTGGACTTGTGCAGG 1081
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACAAGGGTGCGTCTTATTTCGTAATGGATCTTAGAGATAACCTTGGTGGACTTGTGCAGG 1079
Query 1082 CTGGAATAGAAACTGCTAAGCTGTTCCTAGATGAAGGAGATACGGTGATATATACAGCGG 1141
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1080 CTGGAATAGAAACTGCTAAGTTGTTCCTAGATGAAGGGGATACGGTGATATATACAGCTG 1139
Query 1142 GGAGAGACCCCGAGGCTCAAAAAACTGTTGTTTCAGATAAGAAACCTTTGATCACTGCCC 1201
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1140 GGAGAGACCCCGAGGCTCAAAAAACTGTTGTTTCAGATAAGAAACCGTTGATCACTGCCC 1199
Query 1202 CACTTATTGTAATGGTAAATAACAGAACAGCAAGTGCTAGTGAAATTGTGGCCTCTGCAC 1261
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CACTTATTGTAATGGTAAATAGCAGAACAGCAAGTGCTAGTGAAATTGTGGCCTCTGCAC 1259
Query 1262 TTCATGATAACTGTAAAGCAGTTCTTGTTGGCGAAAGAACTTATGGAAAGGGTTTGATTC 1321
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1260 TTCATGATAACTGTAAAGCAGTTCTCGTTGGCGAAAGAACTTACGGAAAGGGTTTGATTC 1319
Query 1322 AATCGGTGTATGAGCTCCGAGATGGTTCAGGAGTTGTTGTGACAATAGGAAAATATGTCA 1381
|||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1320 AATCGGTGTACGAACTCCGAGATGGTTCAGGAGTTGTTGTGACAATAGGAAAGTACGTCA 1379
Query 1382 CACCTAACCATATGGATATCAACGGTGGTGGAATTGAACCTGATTTCAGAAATTTACCAG 1441
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1380 CACCTAACCATATGGACATCAATGGTGGTGGAATTGAACCTGATTTCAGAAATTTACCAG 1439
Query 1442 CTTGGGATGAAGTTAAAGAACGTTTATCTAAGTGCAGTATTCTCCAACAAAGTTGACATG 1501
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1440 CTTGGGATGAAGTTAAAGAACGTTTATCTAAGTGCAATATTCTCCAACGAAGTTGACGTG 1499
Query 1502 CTATGAAACTCATCAAGCTGTGTACTTATTATTCTTTGCTCAAACCACAACaaaaaaaa 1560
| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1500 CAACGAAACTCATCAAGCTTTGTACTTATTATTCTTTGCTTAAACCACAACAAAAAAAA 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5