BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46410.2
Length=2560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494331 jgi|Araly1|494331|fgenesh2_kg.8__147__AT5G46410.2 3642 0.0
Ahg493053 jgi|Araly1|493053|fgenesh2_kg.7__2486__AT4G18140.1 625 6e-178
> Ahg494331 jgi|Araly1|494331|fgenesh2_kg.8__147__AT5G46410.2
Length=2522
Score = 3642 bits (1972), Expect = 0.0
Identities = 2373/2559 (93%), Gaps = 58/2559 (2%)
Strand=Plus/Plus
Query 1 CTCTATTGACCGTTCGTGGAAGTTGTGTgagagaaagaaaaagcccagagagaagagaga 60
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 CTCTCTTGACCGTTCGTGGAAGTTATGTGAGAGAAAGAAAAAACCCAGAGAGAAGAGAGA 60
Query 61 gagaCCCACAACACAAACACAAAGTAGACGAAGAAGACGACGACGAAACAGctctcttct 120
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 61 GAGACCCACAACACAAACACAAAGTAGACGAAGACGACGACGACGAATCAGCTCTCTTC- 119
Query 121 tc-tctcctct-c--tctcAGCATCTTCTGCTGGTTTGGTCTTTCACTAAAGTCTCGGTG 176
|| |||||||| | || |||||||||||||||||||||||||| | |
Sbjct 120 TCTTCTCCTCTCCTATCGCAGCATCTTCTGCTGGTTTGGTCTTT--C---A--------- 165
Query 177 TGCACCTAAATGTGCTTGATCCAAGGTCGTTATAATTCTGTGTACAGAGCCAATGCCATA 236
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 166 TGCACCTAAATGTGCTTGATCCAAGGTCGTTATAATTCTGTATACAGAGCCAATGCCATA 225
Query 237 TATAGAAATGAAGAGCAAGATAAGCAAGGTTCTTGGTGTCTGTAAGAAACATAAAGCAAG 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TATAGAAATGAAGAGCAAGATAAGCAAGGTTCTTGGTGTCTGTAAGAAACATAAAGCAAC 285
Query 297 TACAAGAAATTCTTGCTCTTTGTCCAAAATATCAGGAGACTTGGAAAGCATAACCGCAGC 356
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 286 TACAAGAAATTCTTGCTCTTTGTCCAAAATATCAGGGGACTTGGAAAGCATGACAGCAGC 345
Query 357 TATTACT-A--CTTGCCACGACGATGAGAAACAGCACCCTGTTTCTTCAGGGTTGGATAC 413
||||||| | ||||| ||| ||||||||||||||| ||||||||||||||| |||||||
Sbjct 346 TATTACTCATGCTTGCGACGGCGATGAGAAACAGCATCCTGTTTCTTCAGGGCTGGATAC 405
Query 414 TTTTTCTCGGGAGAGTGAAACTAATGAGCCCGCTGAAATGCTTGTTGAAGATACTTCTCA 473
|||| ||||||| | |||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 406 TTTTACTCGGGATACTGAAACCAATGAGCCTGCTGAAATGCTTGTTGACGACACTTCTCA 465
Query 474 GTCTCAGGGGTTTGCACCTTGGGTCGATGGTTCTCAATCTGTCGAAAATATGGAAAATGC 533
||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 466 ATCTCAGGGGTTTGCATCTTCAGTCGATGGTTCTGAATCTGTCGAAAAAATGGAAAATGC 525
Query 534 TTGCAATCACATGTCAAACTCAGATACAATATTTTCACCTGTTCTGAATGATGAACTGGA 593
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 526 TTGCAATTACATGTCGAACTCAGATACAATATTTTCACCTGTTCTGAATGATGAACTGAA 585
Query 594 TGGAACTGGTCGAGTATTTACAGCAGGAAATTCTGTG-ATCTGGGAAACCCCCAGGTGGG 652
|||||||| |||||||||| |||||||||| |||||| | |||||||||||| |||||||
Sbjct 586 TGGAACTGATCGAGTATTTTCAGCAGGAAACTCTGTGCA-CTGGGAAACCCCTAGGTGGG 644
Query 653 GAGCCGACGAGAGCAGCAACAAGATTTGCTTTGACAACCAAACGTGCAACGTTTCTGATT 712
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 645 GAGCCGACGAGAGCAGCAACAAGATTTGCTTTGACAACCAAACATGCAACGTTTCTGATT 704
Query 713 TCTATATTTCTGACGTTCTTATTGCGAGCTTGCCGTTTGATGAGAGTGGAAACAACGATG 772
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 705 TCTATATTTCCGACGTTCTTATTGCGAGCTTGCCGTTTGATGAGAGTGGAAACAATGATG 764
Query 773 CGTTCACTGAAATAAGCCCCTTGCCTCATTACATCTTTCCTGAGCAGTACATGGTACTAC 832
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 765 CTTTCACTGAAATAAGCCCCTTGCCTCATTACATCTTTCCTGAACAGTACATGGTACTAC 824
Query 833 CTTACTTAGAAGATGGATCAGCCAACAAAGATGATATTAAGTCAGATACTGACAAGATTA 892
|||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 825 CTTACTTAAAAGATGGATCAGCCAACACAGATGATATTAAATCAGACGTTGACAAGATTA 884
Query 893 ATCTCGATAACCATGACTTGTTTCTGGCATTCAACCGGACAAGATCGTACAATGTGGAAC 952
|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 885 ATCTCGATAACCATGAATTGTTTCTGGCATTCAACCGGACAAGATCGCCCAATATGGAAC 944
Query 953 CAGATGATCGTGCTGAATCTGAAGTAGCTGAAGACTTTGATCCTCAGCTTTTTATAAAAA 1012
|||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 945 CAGAGGATCATGCTGAATCTGAACTAGCTGAAGACTTTGATCCTCAGCTTTTTATAAAAA 1004
Query 1013 ATCAGCCGGAATTATCGGATGTTGTATCCAATTATTGGCCTCGGGATACCCTAAGAAAGA 1072
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 ATCAGCCAGAATTGTCGGATGTTGTATCCAATTATTGGCCTCGGGATACCCTAAGAAAGA 1064
Query 1073 AGTCTGTGACCCTTGTCCTTGATTTGGATGAAACTTTGGTCCATTCGACTCTGGAATCGT 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 AGTCTGTGACCCTTGTCCTTGATTTGGATGAAACTTTGGTCCATTCGACTCTGGAATCGT 1124
Query 1133 GTAATGTTGCAGATTTTTCCTTCAGAGTCTTTTTCAACATGCAAGAAAACACGGTCTATG 1192
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GTAATGCTGCAGATTTTTCCTTCAGAGTCTTTTTCAACATGCAAGAAAACACGGTCTATG 1184
Query 1193 TGAGACAAAGGCCACACCTTTACAGGTTCTTGGAGAGGGTGGGAGAGTTGTTTCATGTCG 1252
||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1185 TGAAACAAAGGCCACACCTTTACAGGTTCTTGGAGAGGGTGGTAGAATTGTTTCATGTCG 1244
Query 1253 TTATCTTCACAGCAAGCCACAGCATCTATGCCTCACAACTTCTAGATATACTGGACCCAG 1312
| |||||||| |||||||||| ||||||||| || |||||||| |||||| |||||||||
Sbjct 1245 TCATCTTCACCGCAAGCCACAACATCTATGCTTCGCAACTTCTCGATATATTGGACCCAG 1304
Query 1313 ATGGAAAGTTCATATCACAGCGTTTTTATCGCGATTCATGCATTCTTTTGGATGGAATTT 1372
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1305 AGGGAAAGTTCATATCACAGCGTTTTTATCGTGATTCATGCATTCTTTTGGATGGAATTT 1364
Query 1373 ACACCAAGGATTTAACTGTTCTGGGTCTTGATCTGGCCAAAGTGGCTATAATTGACAACT 1432
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ACACCAAGGATTTAACTGTACTGGGTCTTGATCTGGCCAAAGTGGCTATAATTGACAACT 1424
Query 1433 GTCCGCAGGTGTACAGATTGCAAATAAATAATGGGATCCCTATCAAAAGTTGGTACGATG 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1425 GTCCGCAGGTGTACAGATTGCAAATAAATAATGGGATCCCTATCAAAAGTTGGTATGATG 1484
Query 1493 ATCCAACTGATGATGGGTTGATTACTATACTTCCCTTCTTAGAGACTTTGGCTGTTGCTG 1552
||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1485 ATCTAACTGATGATGGTTTGATTTCTATACTACCCTTCTTAGAGACTTTGGCTGTTGCTG 1544
Query 1553 ATGATGTTCGGCCTATCATTGGCAGGAGATTTGGTAACAAGGAATAAGAGTTTCCTTCTC 1612
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1545 ATGATGTTCGGCCTATCATTGGCAGGAGATTTGGTAACAAGGAATAAGAGCTTCCTTCTC 1604
Query 1613 tttttttCTATATACATCGAGTGCAGATCCTGATTTCTCTCCTTTGGATTTTAGTTACAA 1672
||||| |||||||||||||||||||||| ||||| ||| |||||| ||||||||| | ||
Sbjct 1605 TTTTTCTCTATATACATCGAGTGCAGATTCTGATATCTTTCCTTTTGATTTTAGTCATAA 1664
Query 1673 ATTGGCCCTTAATTAGTTCCTCATATCTCTTTTTAGGTCGTTAATTAGGTAACCAAAGAA 1732
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1665 ATTGGCCCTTAATTAGTTCCTCATATCTCTTGTTAGGTCGTTAATTAGGTAACCAAAGAA 1724
Query 1733 TAAGCTCGTTGAGTCTAGTGAGAATAAGTTTCCTTGCTTGCTCCCtttttttAATAGAAG 1792
||||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||
Sbjct 1725 TAAGCTCGTTGAGTCTAGTGATAGTAAGTTTCCTTGCTTGCTCGC-TTTTTTAATAGAAG 1783
Query 1793 ACCTAGTTGTGGGCTTAAATCTTATGACTTTGCTGGTTCTTCTCTGCCAAGATAGATCCT 1852
||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct 1784 ACCTAGTTGTGGGCTTAAATCTTATGATTTTGTTGGTTCTCCTCTGCCAAGATAGATCCT 1843
Query 1853 AGAAAATCTTGCAGTTTGTTACAAATGTACAGTTGGTTAAGCTGAGATAATGGATGTGTA 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 AGAAAATCTTGCAGTTTGTTACAAATGTACAGTTGGTTAAGCTGAGATAATGGATGTGTA 1903
Query 1913 CAAATGAGTTACTATTGCGTGAAATCATTTTGGAAGTTAACACCAGCTGCATTCATGTGT 1972
|||||||||||||||||||||||||||||||||||||||| |||||| || |||||| ||
Sbjct 1904 CAAATGAGTTACTATTGCGTGAAATCATTTTGGAAGTTAATACCAGCGGCGTTCATG-GT 1962
Query 1973 CTCTCT-TT-GCACTCCTCTTGTACTGTTTAGTTGAGCTTGAAATTCTTACTTGGACTGG 2030
|||||| || | | ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1963 CTCTCTATTTGGATTCCTCTTCTACTGTT-AGTTGAGCTTGAAATTCTTACTTGGACTGG 2021
Query 2031 TAAATCCAGAACATATTTACCTGCGTCAACGCCAGTCATAGAAATACAGAAATATAATCA 2090
|||||||||||| | |||||||||||| | |||||||||| |||||||||||||||||||
Sbjct 2022 TAAATCCAGAACGTTTTTACCTGCGTCTATGCCAGTCATATAAATACAGAAATATAATCA 2081
Query 2091 AATAATGCAGAAGTTGTTGAGTCTGAATCTTGAATCTTCTACCAGCTTCTATTGTTTATT 2150
||||||||||||||| | | | |||||||| || | | |||||||||||||||||
Sbjct 2082 AATAATGCAGAAGTT-T--A-T-TGAATCTT----CTA-T-C-AGCTTCTATTGTTTATT 2129
Query 2151 TTTAAGGTTCTGAGCAAAGTTATTCCACGTTTTCCGTCTCTTGGCTCTGCAACATTCCA- 2209
|| |||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
Sbjct 2130 TTAAAGGTTCTGAGCAAAGTTATCCCACGTTTTCCGTCTCTTGGCTTTGCAAGATTC-AG 2188
Query 2210 ATGAGATATCATACTCCGAGATATCATCCAATGAAGTAACGAACCT-AACTATATTTATT 2268
||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 2189 ATGAGATATCATACTTCGAGATATCATCCAAAGAAGTAACAAACCTTAACTATATTTATA 2248
Query 2269 CGCTTTATGGAAA-TGACAACAGTAGGTAAGTTTTAAATCC-TTATTTACTTGTCCCTTT 2326
||||||||||||| ||||||||||||||||||||||||||| || ||||||| || |||
Sbjct 2249 CGCTTTATGGAAAATGACAACAGTAGGTAAGTTTTAAATCCATT-TTTACTTCTCGTTTT 2307
Query 2327 TTTGGTCTAACAAGCTTCTTTTTG-TTCTTGTTTCTTATTTCCGTCCTCTCT-AACCTTG 2384
|||||||||||||||||||| | | |||||||||||||| ||| |||||| | |||||||
Sbjct 2308 TTTGGTCTAACAAGCTTCTTCT-GCTTCTTGTTTCTTATCTCCTTCCTCT-TGAACCTTG 2365
Query 2385 TAATCTTTATGCTGAAAGCTGTTTCACAATCTTGTTGCTTA-ACTT-GGTCCAAAACCTG 2442
|||||||||| ||||||||||||||||||||||||| |||| | || ||||| |||||||
Sbjct 2366 TAATCTTTATACTGAAAGCTGTTTCACAATCTTGTTACTTATAGTTTGGTCCCAAACCTG 2425
Query 2443 TTTCTGTCCCTCTGTTTCTCCCCCTGGTTTCATGTAGAGTAAACA--GGTTATTGTCTTA 2500
| | ||||||||||||||| |||| ||||||||||||||||| | |||||||||||||
Sbjct 2426 TCTATGTCCCTCTGTTTCTGTCCCTTGTTTCATGTAGAGTAAAAAATGGTTATTGTCTTA 2485
Query 2501 ATATATTATACACGTTT-AGTCACAGATGATTGTTTAAA 2538
|||| |||||||||| ||| | |||||||||||||||
Sbjct 2486 ATATC--ATACACGTTTTAGTGAAAGATGATTGTTTAAA 2522
> Ahg493053 jgi|Araly1|493053|fgenesh2_kg.7__2486__AT4G18140.1
Length=1809
Score = 625 bits (338), Expect = 6e-178
Identities = 664/814 (82%), Gaps = 52/814 (6%)
Strand=Plus/Plus
Query 812 CTGAGCAGTACATGGTACTACCTTACTTAGAAGATGGATCAGCCAACAAAGATGATATTA 871
|||||||||||||| || ||||||||||||||||||||||||||| || |||||| |||
Sbjct 857 CTGAGCAGTACATGCTATTACCTTACTTAGAAGATGGATCAGCCAGCAGTGATGATGTTA 916
Query 872 AGTCAGAT-ACTGACA---AGATTAATCTCGATAACCATGACTTGTTTCTGGCATTCAAC 927
|||| ||| | |||| | |||| ||||||| |||||| ||||| |||| ||||||
Sbjct 917 AGTCTGATGA-GGACAGCGGGGGTAATGTCGATAAACATGACATGTTTATGGCTTTCAAC 975
Query 928 CGGACAAGATCGTACAA-TGTGGAA-C--CAGATGATCGTGCTGAATCTGAAGTAGCTGA 983
|| ||||||| | || | ||||| | |||||| || |||||| ||||| | ||||
Sbjct 976 TGGTCAAGATCACAAAACT-TGGAAGCTGCAGATGCTCACGCTGAAGCTGAACAAACTGA 1034
Query 984 AGACTTTGATCCTCAGCTTTT-TATAAAAAATCAGCCGGAATTATCGGATGTTGTA-TCC 1041
||| ||||||||||||||||| | ||| |||||| ||||||||||| ||||| ||| ||
Sbjct 1035 AGATTTTGATCCTCAGCTTTTCT-TAAGAAATCAACCGGAATTATCTGATGTCGTATTCA 1093
Query 1042 A--A--T---T-AT-T---G--GCCTCGGG-ATACCCTAAGAAAGAAGTCTGTGACCCTT 1086
| | | | || | | |||| ||| || ||| || || |||| | || ||||||
Sbjct 1094 ATTATTTCCCTGATATGCAGCAGCCTAGGGAATCCCCGAA-AAGGAAGGCGGTAACCCTT 1152
Query 1087 G-TC-C---TT-GATTTG-GA-T---GAAACTTTGGTCCATTCGACTCTGGAATCGTGTA 1135
| || | || ||| || | | |||||| |||||||||||||||||| | | || |
Sbjct 1153 GTTCTCGATTTGGATGTGACATTGCAGAAACTCTGGTCCATTCGACTCTGGGAGCCTGCA 1212
Query 1136 -ATGTTGCAGATTTTTCCTTCAGAGTCTTTTTCAACATGCAAGAAAACACGGTCTATGTG 1194
| | | |||| |||||||||||||| | |||||| |||||||| ||||| || || |||
Sbjct 1213 GA-GATACAGACTTTTCCTTCAGAGTGTCTTTCAATATGCAAGAGAACACTGTTTACGTG 1271
Query 1195 AGACAAAGGCCACACCTTTACAGGTTCTTGGAGAGGGTGG--GAGAGTTGTTTCATGTCG 1252
| |||||||||||||||||| |||||||| |||||||||| | | || |||||||| |
Sbjct 1272 AAACAAAGGCCACACCTTTATAGGTTCTTAGAGAGGGTGGTTCA-ACTT-TTTCATGTTG 1329
Query 1253 TTATCTTCACAGCAAGCCACAGC-ATCTATGCCTCACAACTTCTAGATATACTGGACCCA 1311
| |||||||| || || |||||| || ||||| || ||||||||||||||| |||| |||
Sbjct 1330 TCATCTTCACGGCTAGTCACAGCAAT-TATGCGTCTCAACTTCTAGATATATTGGATCCA 1388
Query 1312 GATGGAAAGTTCATATCACAGCGTTTTTATCGCGATTCATGCATTCTTTTGGATGGAATT 1371
||||| ||||| |||| || |||||||| || |||||||||||||||| ||||| |||
Sbjct 1389 GATGGGAAGTTTGTATCGCAACGTTTTTACCGGGATTCATGCATTCTTTCAGATGGGATT 1448
Query 1372 TACACCAAGGATTTAACTGTTCTGGGTCTTGATCTGGCCAAAGTGGCTATAATTGACAAC 1431
||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||
Sbjct 1449 TACACCAAGGATTTAACTGTTTTGGGTCTTGATCTAGCAAAAATGGCTATAATTGACAAC 1508
Query 1432 TGTCCGCAGGTGTACAGATTGCAAATAAATAATGGGATCCCTATCAAAAGTTGGTACGAT 1491
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1509 TGTCCACAGGTGTACAGATTGCAAATAAACAATGGGATCCCTATCAAAAGTTGGTACGAT 1568
Query 1492 GATCCAACTGATGATGGGT-TGATTACTAT-ACTTCCCTTCTTAGAGACTTTGGCTGTTG 1549
||||||||||||||||| | ||||||| || |||||||||||||||||| ||||||| ||
Sbjct 1569 GATCCAACTGATGATGG-TCTGATTAC-ATTACTTCCCTTCTTAGAGACATTGGCTGATG 1626
Query 1550 CTGATGATGTTCGGCCTATCATTGGCAGGAGATT 1583
| | |||||||| ||| |||| | || ||||||
Sbjct 1627 CCAACGATGTTCGTCCTGTCATCGCCAAGAGATT 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96520680830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5