BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46430.1
Length=602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356357 jgi|Araly1|356357|fgenesh1_pg.C_scaffold_8000144 689 0.0
Ahg493058 jgi|Araly1|493058|fgenesh2_kg.7__2491__AT4G18100.1 503 6e-142
> Ahg356357 jgi|Araly1|356357|fgenesh1_pg.C_scaffold_8000144
Length=402
Score = 689 bits (373), Expect = 0.0
Identities = 391/400 (98%), Gaps = 0/400 (0%)
Strand=Plus/Plus
Query 46 ATGGCGGTTCCGTTGCTTACGAAGAAGGTGGTGAAGAAGAGGTCTGCCAAATTCATCAGA 105
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGTTCCGTTGCTTACGAAGAAGGTCGTGAAGAAGAGGTCTGCCAAATTCATCAGA 60
Query 106 CCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTATTGAC 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTATTGAC 120
Query 166 TCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATGTTGGTTACGGATCT 225
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 TCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATATTGGTTACGGATCT 180
Query 226 GATAAGAAGACCCGCCACTACCTCCCAAATGGATTCAAGAAGTTCATTGTTCACAACACC 285
|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 181 GACAAGAAGACCCGCCACTACCTCCCCAATGGATTCAAGAAGTTCGTTGTTCACAACACC 240
Query 286 TCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTCACAAT 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTCACAAT 300
Query 346 ATCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACGTTGTTGTT 405
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GTCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACATTGTTGTT 360
Query 406 TCCAACAAGCTTGGTAGGTTGCGTAGCCAGGAAGACGAGT 445
|| |||||||||| ||||||||||||||||||||||||||
Sbjct 361 TCGAACAAGCTTGCTAGGTTGCGTAGCCAGGAAGACGAGT 400
> Ahg493058 jgi|Araly1|493058|fgenesh2_kg.7__2491__AT4G18100.1
Length=702
Score = 503 bits (272), Expect = 6e-142
Identities = 363/408 (89%), Gaps = 2/408 (0%)
Strand=Plus/Plus
Query 42 AAAAATGGCGGTTCCGTTGCTTACGAAGAAGGTGGTGAAGAAGAGGTCTGCCAAATTCAT 101
|||||||||||| ||||||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 59 AAAAATGGCGGTCCCGTTGCTTACCAAGAAGGTCGTGAAGAAGAGGTCTGCTAAGTTCAT 118
Query 102 CAGACCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTAT 161
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 119 CAGACCCCAGAGTGACCGCAGAATCACCGTTAAGGAAAGCTGGAGGAGGCCAAAGGGTAT 178
Query 162 TGACTCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATGTTGGTTACGG 221
||| || ||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 179 TGATTCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTACGG 238
Query 222 ATCTGATAAGAAGACCCGCCACTA-CCTCCCAAATGGATTCAAGAAGTTCATTGTTCACA 280
|||||| |||||||| || ||||| | |||| |||||||||||||| ||| |||||||||
Sbjct 239 ATCTGACAAGAAGACTCGTCACTATCTTCCC-AATGGATTCAAGAAATTCGTTGTTCACA 297
Query 281 ACACCTCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTC 340
|||| |||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 298 ACACAAGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCAGAGATTGCTC 357
Query 341 ACAATATCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACGTTG 400
|||| |||| || |||||||| ||| | || || ||||||||||||||||||||| |||
Sbjct 358 ACAACGTCTCCACTAAGAAGAGGAAGTCAATTGTTGAGAGAGCTTCTCAGCTAGACATTG 417
Query 401 TTGTTTCCAACAAGCTTGGTAGGTTGCGTAGCCAGGAAGACGAGTGAA 448
||||| |||||| ||||| |||| | |||||||| |||||||||||||
Sbjct 418 TTGTTACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGTGAA 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22053930442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5