BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46460.1
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494326 jgi|Araly1|494326|fgenesh2_kg.8__142__AT5G46460.1 3236 0.0
Ahg493946 jgi|Araly1|493946|fgenesh2_kg.7__3379__AT5G40410.1 56.5 8e-07
> Ahg494326 jgi|Araly1|494326|fgenesh2_kg.8__142__AT5G46460.1
Length=2094
Score = 3236 bits (1752), Expect = 0.0
Identities = 1983/2097 (95%), Gaps = 6/2097 (0%)
Strand=Plus/Plus
Query 1 ATGTGGAGTCGTGCCATTTTTCAACGATTCAGGTTTCGAGCTTTCTCTATATCTCACGTT 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATGTGGAGTCGTGCCATTTTTCAACGATTCAGGTTTCGAGCTTTCTCCATGTCTCACGTT 60
Query 61 ATCCATGGGAAATG-TTACAGAAGTTTCTCAGTTACTGTGGAGTTTCAGAATCGCGAGGT 119
|||||||||||| | || ||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 61 ATCCATGGGAAAAGCTT-CAGGAGTTACTCAGTTACTGTGGAGTTTCAGAATCGCGAAGT 119
Query 120 TTTGATATGTAATCACTTGTTGAGTCGACGAATCGATGAGGCTCGAGAGGTTTTCAATCA 179
||||||||||||||||||||||| |||| || |||| ||||| |||||||||||| ||||
Sbjct 120 TTTGATATGTAATCACTTGTTGAATCGAAGACTCGACGAGGCACGAGAGGTTTTCGATCA 179
Query 180 GGTTCCATCTCCTCATGTGAGTCTTTACACAAAGATGATTACGGGATACACGAGGAGTAA 239
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 180 GGTTCCATCTCCTCATGTGAGTCTTTACACCAAGATGATTTCGGGATACACGAGGAGTAA 239
Query 240 TAGATTGGTTGATGCGTTGAATCTGTTCGACGAAATGCCTGTGAGAGATGTTGTATCATG 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 240 TAGATTGGTTGATGCGTTGAATCTGTTCGACGAAATGCCTTTGAGAGATGTTGTTTCGTG 299
Query 300 GAATTCGATGATCAGTGGTTGTGTGGAGTGTGGTGATATGA-ATACTGCAGTGAAGCTGT 358
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 300 GAATTCGATGATCAGTGGTTGTGTGGAGTGTGGTGATAT-AGATACTGCAGTGAAGATGT 358
Query 359 TCGATGAAATGCCTGAGAGAAGCGTGGTTTCATGGACAGCGATGGTAAATGGGTGTTTTA 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TCGATGAAATGCCTGAGAGAAGCGTTGTTTCATGGACAGCGATGGTAAATGGGTGTTTTA 418
Query 419 GGTCTGGTAAGGTTGATCAAGCGGAGAGATTGTTTTATCAAATGCCTGTGAAAGATACTG 478
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 419 GGTTTGGTATGGTTGATCAAGCGGAGAGATTGTTTTATCAAATGCTTGTGAAAGATATTG 478
Query 479 CAGCGTGGAATTCGATGGTTCATGGGTATTTACAGTTTGGTAAAGTAGACGATGCCTTGA 538
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAGCCTGGAATGCGATGGTTCATGGGTATTTACAGTTTGGTAAAGTAGACGATGCCTTGA 538
Query 539 AGTTGTTTAAGCAAATGCCTGGGAAGAATGTGATTTCGTGGACGACAATGATCTGTGGGT 598
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| || |
Sbjct 539 AGTTGTTTAAGCAAATGCCCCGGAAGAATGTGATTTCCTGGACGACAATGATCTGCGGAT 598
Query 599 TAGACCAGAATGAGAGGAGTGGAGAGGCTCTCGATTTGTTCAAGAACATGTTGCGTTGTT 658
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 599 TAGACCAGAATGAGAGGAGTGGAGAAGCTCTCAATTTGTTCAAGAACATGTTGCGTTGTT 658
Query 659 GCATAAAATCGACTTCAAGACCATTCACTTGCGTAATCACCGCTTGCGCGAATGCTCCAG 718
|||||||||||||||||||| | |||||||| |||||||||||||| || ||||||||||
Sbjct 659 GCATAAAATCGACTTCAAGAACGTTCACTTGTGTAATCACCGCTTGTGCAAATGCTCCAG 718
Query 719 CGTTTCATATGGGGATACAAGTTCATGGCTTGATCATCAAGTTGGGGTTTTTATATGAAG 778
||||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 719 CGTTTCATATGGGTACCCAAGTTCATGGCTTCATCATCAAGTCGGGGTTTTTATATGAAG 778
Query 779 AATATGTATCTGCTTCGCTCATAACTTTTTATGCAAACTGCAAAAGAATAGGGGATTCTC 838
|||||||| |||||||||||||||| || ||||||||||||||||||| || ||||||||
Sbjct 779 AATATGTAACTGCTTCGCTCATAACGTTATATGCAAACTGCAAAAGAACAGAGGATTCTC 838
Query 839 GGAAGGTGTTTGACGAGAAGGTTCATGAACAA-GTTGCTGTGTGGACTGCTCTATTGTCA 897
| |||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 839 GTAAGGTGTTTGGCGAGATGGTTCATGAA-AAGGTTGCTGTGTGGACTGCTCTATTGTCT 897
Query 898 GGTTATAGTCTGAACAAAAAGCACGAAGATGCGTTGAGTATATTCTCCGGGATGTTAAGA 957
|| ||||||||||| | |||||| ||||||||||| | | | ||||||||||||||||||
Sbjct 898 GGGTATAGTCTGAATAGAAAGCATGAAGATGCGTTAAATGTTTTCTCCGGGATGTTAAGA 957
Query 958 AACAGTATCTTACCAAATCAATCAACATTTGCTAGCGGATTAAACTCTTGCTCTGCTTTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AACAGTATCTTACCAAATCAATCAACATTTGCTAGCGGATTAAACTCTTGCTCTGCTTTG 1017
Query 1018 GGAACATTGGATTGGGGTAAGGAGATGCATGGAGTTGCTGTGAAGCTTGGTTTAGAAACT 1077
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 1018 GGAACATTGGATTGGGGTAAGGAGATACATGGAGTTGCTGTGAAGCTCGGTTTAGGAACT 1077
Query 1078 GATGCCTTTGTGGGTAATTCTCTTGTTGTGATGTACAGCGATTCTGGAAACGTTAATGAT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 GATGCCTTTGTGGGTAATTCTCTTGTTGTGATGTACAGCGATTCTGGAAACGTTAACGAT 1137
Query 1138 GCCGTTTCAGTGTTCATAAAAATCTTCAAGAAGAGCATTGTGTCATGGAATTCCATTATT 1197
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCCGTTTCAGTGTTCATAGAAATCTTCAAGAAGAGCATTGTGTCATGGAATTCCATTATT 1197
Query 1198 GTTGGCTGCGCGCAGCATGGGCGTGGAAAGTGGGCGTTTGTCATATTTGGTCAAATGATA 1257
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1198 GTTGGCTGCGCACAGCATGGGCGTGGAAAGTGGGCGTTTGTCATATTCGGTCAAATGATT 1257
Query 1258 CGCCTAAACAAAGAGCCAGATGAGATCACTTTCACTGGCTTACTCTCTGCTTGTAGCCAT 1317
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1258 CGCCTAAACAAAGAGCCAGATGAGATAACTTTCACTGGCTTGCTCTCTGCTTGTAGCCAT 1317
Query 1318 TGCGGGTTCCTAGAGAAAGGAAGAAAGCTGTTCTATTACATGTCAAGTGGAATAAATCAT 1377
|||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1318 TGCGGGTTCCTACAGAAAGGAAGAAAGCTGTTCTATTACATGTCAAGCGGACTAAATCAT 1377
Query 1378 ATCGATAGAAAGATTCAACACTACACTTGTATGGTTGATATCTTGGGAAGATGCGGAAAA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1378 ATCGATAGAAAGATTCAACACTACACTTGTATGGTTGATATCTTGGGAAGATGCGGGGAA 1437
Query 1438 TTGAAAGAAGCAGAAGAACTTATCGAGAGAATGGTTGTGAAACCTAATGAAATGGTTTGG 1497
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1438 TTGAAAGAAGCAGAAAAACTTATCGAGAGCATGGTTGTGAAACCTAATGAAATGGTTTGG 1497
Query 1498 TTGGCTTTACTTAGTGCTTGTAGGATGCATTCTGATGTAGACAGAGGCGAGAAAGCTGCT 1557
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 TTGGCTTTACTTAGTGCTTGTAGGATGCATTCTGATGTAGATAGAGGCGAGAAAGCTGCT 1557
Query 1558 GCAGCCATTTTTAATCTGGACTCAAAATCAAGCGCTGCTTATGTCTTATTGTCAAATATA 1617
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1558 GCAGCCATTTTTAATCTGGACTCAAAATCAAGCGCTGCTTATGTCTTGTTGTCAAATATA 1617
Query 1618 TATGCTTCTGCTGGTAGATGGTCGAATGTATCAAAATTGAGAGTTAAGATGAAGAAGAAT 1677
||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||
Sbjct 1618 TATGCTTCTGCTGGTAGATGGTCCAGTGTATCGAAATTGAGAGTTAAGATGAAGCAGAAG 1677
Query 1678 GGGATTATGAAGAAACCCGGGAGCAGTTGGGTTGTTATTAGAGGGAAAAAGCACGAATTT 1737
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1678 GGGATTATGAAGAAACCCGGGAGCAGTTGGGTTGTGATTAGAGGGAAAAAGCACGAGTTT 1737
Query 1738 TTCTCCGGTGATCAACCACATTGCTCGAGGATATATGAGAAGTTGGAGTTTCTGAGAGAG 1797
||||||||||||| |||||||||| ||| |||| |||||||||||| ||||||||||||
Sbjct 1738 TTCTCCGGTGATCGTCCACATTGCTTGAGAATATTTGAGAAGTTGGAATTTCTGAGAGAG 1797
Query 1798 AAGTTGAAGGAACTGGGCTATGCTCCTGATTATAGATCCGCTTTACATGACGTTGAAGAT 1857
|||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 1798 AAGTTGAAGGAACTGGGCTATGTTCCTGATTATAGATCTGCTTTACATGATGTTGAAGAT 1857
Query 1858 GAACAGAAAGAAGAGATGTTGTGGTACCACAGTGAGAGGCTTGCTATTGCTTTTGGGTTG 1917
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 1858 GAACAGAAAGAAGAGATGTTATGGTATCACAGTGAGAGGCTTGCTATTGCGTTTGGGTTG 1917
Query 1918 ATTAATACAGTTGAAGGAAGTGCAGTCACAGTGATGAAGAATCTACGGGTTTGTGAAGAT 1977
||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||||||||||
Sbjct 1918 ATTAATACAGTTGAAGGAAGTACAGTGACAGTAATGAAAAATCTACGAGTTTGTGAAGAT 1977
Query 1978 TGTCACACAGTGATTAAGTTAATCTCCGGAGTTGTGGGACGTGAGATTGTTTTAAGGGAT 2037
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 1978 TGTCACACAGTGATTAAGTTAATCTCCAGAGTTGTGGGATGTAAGATTGTTTTAAGGGAT 2037
Query 2038 CCGATTCGGTTTCATCATTTCAAGAATGGGACGTGTTCTTGTGGGGATTATTGGTAG 2094
|||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2038 CCGACTCGGTTTCATCATTTCAAGAATGGGATGTGTTCTTGCGGGGATTATTGGTAG 2094
> Ahg493946 jgi|Araly1|493946|fgenesh2_kg.7__3379__AT5G40410.1
Length=1852
Score = 56.5 bits (30), Expect = 8e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 346 GCAGTGAAGCTGTTCGATGAAATGCCTGAGAGA 378
|||| ||||||||||||||||||||||||||||
Sbjct 267 GCAGAGAAGCTGTTCGATGAAATGCCTGAGAGA 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78770626660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5