BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46530.1

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330772 jgi|Araly1|330772|fgenesh1_pm.C_scaffold_8000115           776    0.0  


> Ahg330772 jgi|Araly1|330772|fgenesh1_pm.C_scaffold_8000115
Length=474

 Score =  776 bits (420),  Expect = 0.0
 Identities = 456/474 (96%), Gaps = 0/474 (0%)
 Strand=Plus/Plus

Query  52   ATGGTGGAACATCAGATGAAACCGGTGGCCTCTTTTCTTTTAGTCCTGAACTTTTGTATG  111
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGTGGAACAGCAGATGAAACCGGTGGCCTCTTTTCTTTTAGTTCTGAACTTTTGTATG  60

Query  112  TATGCCATTGTTCTTGGAATTGGCGCATGGTCCATGAACAAAGCTATCAACCATGGTTTC  171
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  61   TATGCCATTGTTCTTGGAATTGGTGCATGGTCCATGAACAAAGCTATCAACCATGGCTTC  120

Query  172  CTTATTGGTGCGGATTATAGTCTTCCGGCTCATTTCTCGCCGATACATTTTCCAATGGGT  231
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  121  CTTATTGGTGCGGATTATAGTCTTCCGGCTCATTTCTCGCCAATACATTTTCCAATGGGC  180

Query  232  AATGCGGCCACCGGATTCTTCATTATGTTTGCTTTAATTGCTGGAGTTGCTGGAGCTGCC  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATGCGGCCACCGGATTCTTCATTATGTTTGCTTTAATTGCTGGAGTTGCTGGAGCTGCC  240

Query  292  TCGGTTATCTCCGGCATCAGTCATCTCCAATCATGGACAACGACTAGTCTCCCGGCAGCT  351
            ||||||||||||||| ||||||||||||||||||||||  | ||||||||||| ||||||
Sbjct  241  TCGGTTATCTCCGGCGTCAGTCATCTCCAATCATGGACTTCTACTAGTCTCCCAGCAGCT  300

Query  352  GTCTCTGCCGCCACTATTGCTTGGTCGCTAACACTTTTAGCCATGGGATTTGGTTGCAAG  411
            ||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  301  GTCTCCGCCGCCACCATTGCTTGGTCGCTGACACTTTTAGCCATGGGATTTGGCTGCAAG  360

Query  412  GAAATTGAACTTGGGATGAGAAATGCTCGTCTGAGGACAATGGAGGCATTTCTAATTATA  471
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  361  GAAATTGAACTTGGGATGAGAAATGCTCGTCTGAGGACAATGGAGGCATTTCTAATAATA  420

Query  472  CTTTCGGCAACACAACTTCTCTACATTGCTGCTATATACGGCGTTCGAAAATAA  525
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  421  CTTTCGGCAACACAACTTCTCTATATTGCTGCTATATACGGAGTTCGAAAATAA  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23598085623


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5