BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46550.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915411 jgi|Araly1|915411|Al_scaffold_0008_162 1760 0.0
> Ahg915411 jgi|Araly1|915411|Al_scaffold_0008_162
Length=1467
Score = 1760 bits (953), Expect = 0.0
Identities = 1332/1506 (88%), Gaps = 62/1506 (4%)
Strand=Plus/Plus
Query 129 ATGGTTGCGATACCCAATA-TTAAGATAAAGTTTGGTCCTCAAGGTTCTGTCAGAACATT 187
|||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTGCAATACCCAA-ACTTAGGATAAAGTTTGGTCCTCAAGGTTCTGTCAGAACATT 59
Query 188 CCAAACGTTGT-CTGATAGTTCGAAGAAAATTGAGCATGTAGTGACTGAAGATTTATCTC 246
||||||||| | ||| |||||| |||||||||||||| | | | | || |
Sbjct 60 CCAAACGTT-TCCTGGTAGTTCAAAGAAAATTGAGCA--T--T--C-----ACTT-GGTG 106
Query 247 AATCCTCGGAGAAATCAAAGAAGCGTGGTGGGCCTAAAGAGCTAGATGAAGTTCAACCTA 306
|| ||| |||| ||||||| |||| ||| |||||||||| || |||||| |||
Sbjct 107 AA------GAGCAATCGAAGAAGC---GTGGACCTGAAGAGCTAGAGGATGTTCAAGCTA 157
Query 307 AGAAGAAGCAGAGGCTGGATTGTGATTGGTCTAGTCAATGTTTGGCATTGTTACGTTTTT 366
|||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 158 AGAAGAAGCAGAAGCTAGATTGTGATTGGTCTAGTCAGTGTTTGGCATTGTTACGTTTTT 217
Query 367 TGATGGAGCACCGTGGTGGATGGCTCTTT-AAGGAGCCTGTTGATCCTGTTAAAATGGAG 425
||||||||||||||| ||| ||||||||| || |||||||| |||||||||||| |||||
Sbjct 218 TGATGGAGCACCGTGTTGGTTGGCTCTTTGAA-GAGCCTGTGGATCCTGTTAAATTGGAG 276
Query 426 ATTCCTGATTACTTCAATGTCATACAAAAGCCAATGGATTTAGGCACTGTCAAATCGAAA 485
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||
Sbjct 277 ATTCCTGATTACTTCTCTGTCATACGAAAGCCAATGGATTTAGGCACTGTCAAATCAAAA 336
Query 486 CTTTTGAAGAATGTCTACAGTAATGCTGATGAGTTTGCAGCGGATGTTCGGTTAACTTTT 545
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CTTTTGAAGAATGTGTATAGTAATGCTGATGAGTTTGCAGCGGATGTTCGGTTAACTTTT 396
Query 546 GCCAATGCGATGCATTATAATCCTCTGTGG-AATGAGGTTCACACGATTGCAAAGGAGAT 604
||||||||||||| |||||||||| | || |||||||||||||||||||||||||||||
Sbjct 397 GCCAATGCGATGCGGTATAATCCTCCG-GGCAATGAGGTTCACACGATTGCAAAGGAGAT 455
Query 605 TAATGAGATTTTTGAGGTTAGATGGGAATCACTCATGAAGAAAAAGGTTTTGAGGTTATC 664
||| ||||||||||||||||||||| ||| ||||| |||||||| ||||| || || ||
Sbjct 456 TAAGGAGATTTTTGAGGTTAGATGGAAATTACTCAAGAAGAAAATGGTTTCGAAATTGTC 515
Query 665 CTGGAATGAAGTTAGAGAAGGTTATAAGAGACAGCCAGTTGAACG-T-GATTGTTCTAGA 722
| || |||||||| |||||||| |||||| ||||| |||| | | | |||||||| |||
Sbjct 516 CGGGGTTGAAGTTACAGAAGGTTCTAAGAGGCAGCCTGTTG-A-GTTCGATTGTTCCAGA 573
Query 723 CGGAGCAGCACTGGAACATCAGCTTCCTCTGGGG-----T----GGGATTGACGAAACCA 773
| ||||||| ||||||||||||||| |||||||| | ||||| ||| ||||||
Sbjct 574 CAGAGCAGCCCTGGAACATCAGCTTGCTCTGGGGTTTTCTCCGCGGGATCGACAAAACCA 633
Query 774 GCTAAAGAGAACTCCGAAAAGGGTTCTCTTTCGTCCAAGCCAGTGAAAGTGCAGAGCAAA 833
|| ||||| |||||| | |||||||||| ||||||||||||| ||||||||||
Sbjct 634 GCAAAAGAAAACTCC-------G--CTCTTTCGTCAAAGCCAGTGAAAGCGCAGAGCAAA 684
Query 834 AAGAATACTCCTGCTGTGACGCCTAAAGCATTA-G-CAACCT-GTAAATGTGGTAGGATA 890
||| ||||||||||||||||||| ||||||||| | || | || ||||||||||||
Sbjct 685 AAGGATACTCCTGCTGTGACGCCGAAAGCATTATGTAAATGTGGTTCATGTGGTAGGATT 744
Query 891 ATTTGCATATGCCTCAAGTCCTGTAGCTCATTTGGAAGTGACGTTTGTTCGTTAACGGAT 950
||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||
Sbjct 745 ATTTGCATATGCCTCAAGTCCTGTAGCTCATCTGGAAGTGAAGTTTCTTCATTAACGGAT 804
Query 951 TGTCAATTAAAGAACATTTCAGGTGCACAAGCGAGCGAGTTAGATCCTCAATCTAATGGG 1010
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 805 TGTCAAGTAAAGAACATTTCAGGTGCACAAGCGAGCGAGTCAGATCCTCAATCCAATGGG 864
Query 1011 TCTGACACTTCAAAGAAGGAGAGAAATGGTAGTCTCAAGTCTCAGCTTGATAAACCTTCA 1070
|||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 865 TCTGTGACTTCAAAGAATGAGAGAAATGGTAGTGTCAATTCTCAGCTTGATAAACCTTCA 924
Query 1071 AACAGTGATCTGTTGGGTAATGAGTTGAAAACGGCTTTTCCTGCTCTGCCGCCGGTACCT 1130
|||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 925 AACAATGCTCTGTTGGATAATGAGTTGAAAACAACTTTTCCTGCTCTGCCGCCGGTACCT 984
Query 1131 CCTGAGAAAGCTCTTCGTGCTGCAATACTCAAAGCTCAATATGCAG-GAACCAT-CATAA 1188
|||||||||||||||||||||||||||||||||||||||||||||| || |||| | |||
Sbjct 985 CCTGAGAAAGCTCTTCGTGCTGCAATACTCAAAGCTCAATATGCAGAGA-CCATTC-TAA 1042
Query 1189 AAGCTAAACACAGAATAGTCCTTGGCCAGAATAACAAAGCTGATCTGATTAGAATACAGA 1248
|||||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 1043 AAGCTAAACACAGAGTAGTCCTTGACCAGAATAACAAAGCTGATCTAATTAGACTACAGA 1102
Query 1249 TAGAAAAGGAACAGATGGAAAGAGCACAACGTGAAGAGAAAGCTAGAATTGAAGCCGAGA 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TAGAAAAGGAACAGATGGAAAGAGCACAACGTGAAGAGAAAGCTAGAATTGAAGCCGAGA 1162
Query 1309 TGAGAGCTGCTAAGGTTGCTGAACGAATGAGGGCACAAGACGAGTTGAAACAGAAACGTG 1368
|||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||
Sbjct 1163 TGAGCGCTGCTAAGGTAGCTGCCCGAATGAGGGCACAAGCCGAGTTGAAACAAAAACGTG 1222
Query 1369 AGAGTCAACGGCTTGAAATAGCAAAGATGAAAAAAGGCTTCGATTTTGAACGGAACAACC 1428
||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1223 AGACACAACGGCTTGAACTAGCAAAGATGAAAAAAGGCTTCGATTTTGAACAGAACAACC 1282
Query 1429 ACTCGAAATTGAAGAAAAAATTCGTTAAAGTCTGTGGCTGCTTTAGTCTGACAAAAGCTC 1488
||| ||||||| ||||| | |||||| |||||||||| |||| ||||||||||| |||||
Sbjct 1283 ACTTGAAATTGGAGAAAGATTTCGTTGAAGTCTGTGGATGCTCTAGTCTGACAAGAGCTC 1342
Query 1489 GGTTGTTACTT-GAAGAGTTGGGTCTGGTTTTGAAAAA-TGATTATTGTCCGGAACTGGA 1546
|||||||||| || ||||||||||||||||| || || |||| || |||||||||||||
Sbjct 1343 GGTTGTTACTAAGA-GAGTTGGGTCTGGTTTT-AAGAAGTGATGATCGTCCGGAACTGGA 1400
Query 1547 AGTGATCGGGTCAGAAAAATTTGATGCAATGAGAATGGACGATCTTGAGGAAGGAGAGAT 1606
|| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1401 AGAGATCGGGTCAGAAAATTTTGATGCAATGAGAATCGAGGATCTTGAGGAAGGAGAGAT 1460
Query 1607 CCTTTA 1612
||||||
Sbjct 1461 CCTTTA 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5