BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46560.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494322 jgi|Araly1|494322|fgenesh2_kg.8__138__AT5G46560.1 848 0.0
> Ahg494322 jgi|Araly1|494322|fgenesh2_kg.8__138__AT5G46560.1
Length=1262
Score = 848 bits (459), Expect = 0.0
Identities = 560/609 (92%), Gaps = 5/609 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCGATACCACGGAAGCGACCCAAATCGGAAACCAGAACGGGCAGAACCCCTAAA 60
||||||||||||||| ||||||||||||||||||| |||||||| || || | ||
Sbjct 1 ATGGATTCGATACCAAGGAAGCGACCCAAATCGGAGACCAGAAC-TCCA-AA-ACGGAAC 57
Query 61 tcttcttcttcttcttctCCGATCAGATCAATGCTCGAGCCACCACAAAGCTTATTTCCT 120
|| || ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 58 CCTAAATCATCTTCTTCTCCGATCAGATCAATGCTCGAGCCACCACAAAGTTTCTTTCCT 117
Query 121 TCCAAGGGAGAGTTCTTCACACTATTGAAGGTTTTGCTTGTCGCTTGTGCTGTAGCTTTT 180
||||||| ||||||||||| ||| ||||| ||||||||||||||||||| ||| ||||||
Sbjct 118 TCCAAGGAAGAGTTCTTCAGACTCTTGAAAGTTTTGCTTGTCGCTTGTGTTGTTGCTTTT 177
Query 181 ACCTGCAATTTCCTCTCTAAGTCTCTGAGCTCAAACCCTTCTAAATCTTTCTGCGATAGT 240
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 178 ACCTGCAATTTCCTCGCTAAGTCTCTGAGCTCAAACCCTACTAAATCTTTCTGCGATAGT 237
Query 241 AACTTTAATCCCATCGATTCAGACTTGGATATTTGTGAACCTTGTCCAATTAATGGAGAA 300
|||| | || ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 AACTATGATTCCATCGAGTCAGACTTGGATTTTTGTGAACCTTGTCCAATTAATGGAGAA 297
Query 301 TGTTACCAAGGGAAGTTGCAATGTAATCTTGGATACAAAAATCAAAGGAATTTATGTGTA 360
|||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 298 TGTTGCCAAGGGAAGTTGAAATGTAATCTTGGATACAAAAAGCAAAGAAATTTATGTGTA 357
Query 361 GAAGATGGAGAAATCAATGAATCAACTAAGAAATTGGTTGGGTATTTTGAGAGAAAAGTT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 GAAGATGGAGAAATCAATGAATCAACCAAGAAATTGGTTGGGTATTTTGAGAGAAAAGTT 417
Query 421 TGTGAATCATATGCTCATAATGAATGTTATGGTACGGGAACCATTTGGGTTCCAGAAAAT 480
|||||| ||||||||||||||||||| ||||| || ||| ||||||||||||| || |||
Sbjct 418 TGTGAAGCATATGCTCATAATGAATGCTATGGCACTGGAGCCATTTGGGTTCCGGAGAAT 477
Query 481 GATGTTT-GGACAGAACTACGTAGTAACAGTTTCTTGAGTAACTTAGACGAGTCTGCTTA 539
||||||| ||| |||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 478 GATGTTTGGGA-AGAACTACGTAGCAACAGTTTCTTGAATAATTTAGACGAGTCTGCTTA 536
Query 540 CAATTTTTTGAAAGGAAAGGCTGTTGAAGGTGTCACCGAGCTACTAGAGAAAAGGACTAA 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 CAATTTTTTGAAAGGAAAGGCTGTAGAAGGTGTCACCGAGCTACTAGAGAAAAGGACTAA 596
Query 600 TTCTAATGG 608
|||||||||
Sbjct 597 TTCTAATGG 605
Score = 843 bits (456), Expect = 0.0
Identities = 595/661 (90%), Gaps = 14/661 (2%)
Strand=Plus/Plus
Query 640 GCCAAAAGTTACAAACCTTTGACCTGTCGCTTGCATCAATGGATCTTGCGGCATATCTTA 699
|||| ||| |||||||| ||||| || ||| ||| ||||||| ||||| |||| ||||||
Sbjct 605 GCCAGAAGCTACAAACCCTTGACTTGCCGCATGCGTCAATGGCTCTTGAGGCACATCTTA 664
Query 700 ATCATCTCGT-CGTCCTGTGCAAT-G----CTAGTGGGCAGCGCAATGTTGCGTAGGAGA 753
|| ||||||| || | |||||||| | ||||| ||||||||| | |||||||||| |
Sbjct 665 ATTATCTCGTCCG-CATGTGCAATGGTATTCTAGTCGGCAGCGCAGTATTGCGTAGGAAA 723
Query 754 ATTCAACGTAAGCAATGTTTTTCAAGAAGAGTGGAAGAGTTATACGACCAGGTCTGTGAC 813
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 ATTCAACGTAAGCGATATTTTTCAAGAAGAGTGGAAGAGTTATACGACCAGGTCTGTGAC 783
Query 814 TTCCTGGAAGAGAATGCAGTGGCATCAAATTCTGCAGAAACTAGTAACTGCGAGCCTTGG 873
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 784 TTCCTGGAAGAGAATGCAGTGGCATCAAATTCTGCAGACACTAGTAATTGTGAGCCTTGG 843
Query 874 GTTATTGCATCTTGGTTACGTGATTATCTACTCTTGCCTAGGGAAAGAAGAGACCCTCTG 933
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 844 GTTATCGCATCTTGGTTACGTGATTATCTACTCTTGCCTAGAGAAAGAAGAGACCCTCTG 903
Query 934 TTATGGACTAAGGTTGAGGAGTTAATAAAAGAGGATTCACGTATAGACCGATATGAAAAA 993
||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||
Sbjct 904 TTATGGACTAAGGTTGAGGAGTTAATAAAGGAGGATTCACGTATAGACCAATGTCCGAAA 963
Query 994 CTCCTCAAAGGTGaaaaaaaaGTTGTATGGGAATGGCAAGTGGAAGGTTCACTTAGTTTA 1053
|| | || |||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 964 GTCGTTAAGGGTGAACAAAAAGTTGTATATGAATGGCAAGTCGAAGGTTCACTTAGTTTA 1023
Query 1054 TCCAAGTTGAAGAAACAGAGAGAGACGCAGAAGAAAGTCAGAAAAAGTATCGACTCAAGC 1113
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1024 TCCAAGTTGAAGAAACAGCGAGAGACGCAGAAGAAAGTTAGAAAAAGTATCGGCTCAAGC 1083
Query 1114 ACAAGCTTGCAAGAGTATTACAACAGACGAATTGCCGAGACAAGTTCTTAGTACATGTAC 1173
|||||||||||||| ||||||||||| | || ||||||||||||||||||||||| |||
Sbjct 1084 ACAAGCTTGCAAGAAAATTACAACAGAAGGAT-GCCGAGACAAGTTCTTAGTACATTTAC 1142
Query 1174 AGAAGAAC-ATTATAGAAGCTTGCTATGATTCTTCACGTAATGTCAGAAGATCCAAGGAA 1232
| |||||| || ||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 1143 AAAAGAACCAT-ATAGAAGCTTGTTATGATTCTTCACGTAATTTTAGAAGATCCAAGGAA 1201
Query 1233 TGAAGCATTGTCGATTTTTCCATGttttttttttAT---GTTGATGATGATGCTTGAATT 1289
||||||||||||||| || ||| ||||||||||| | |||||||||||||||||||||
Sbjct 1202 TGAAGCATTGTCGATATT-CCAAGTTTTTTTTTTTTTCTGTTGATGATGATGCTTGAATT 1260
Query 1290 T 1290
|
Sbjct 1261 T 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5