BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46570.1
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494321 jgi|Araly1|494321|fgenesh2_kg.8__137__AT5G46570.1 3217 0.0
> Ahg494321 jgi|Araly1|494321|fgenesh2_kg.8__137__AT5G46570.1
Length=1984
Score = 3217 bits (1742), Expect = 0.0
Identities = 1909/1986 (96%), Gaps = 25/1986 (1%)
Strand=Plus/Plus
Query 1 ACCTCTATTTTTTCAAGTCTGCAGCTTTTTGAAGCTATATTTTTCAGA------TCT-T- 52
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 1 ACCTCTATTTTTTCAACTCTGCAGCTTTTTGAAGCTATATTTTTCAGATCTTTCTCTCTC 60
Query 53 TCACTCTCTCTCTAGCTACTTCTTTTTGTCTTTAAGTTTTCAAATTTTATTAAATTTTTA 112
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TCTCTCTCTCTCTAGCTACTTCTTTTTGTCTTCAAGTTTTCAAATTTTATTAAATTTTTA 120
Query 113 T-ATTCTACTGCCTCCTCAGCTTCTCTCACAAAGCACAAATCCAAGCCCCAAATCAAATC 171
| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 121 TAATTCTACTGCCTCCTCAGCTTCTCTCACAAAGCACAAATCCAAACCCCGAATCAAATC 180
Query 172 CCACCATTG-TTTTATTACCTCAATCCAAGAACACTAGACACAAC-AAAAATCTCTGTTT 229
||||||||| ||||||||||||||||||||||||| | |||| || ||||||||||||||
Sbjct 181 CCACCATTGTTTTTATTACCTCAATCCAAGAACACAAAACAC-ACAAAAAATCTCTGTTT 239
Query 230 CTTATCCAAATTTCTGATCTTTGTGGAGAAC-AA----T-A----TTTTGATTGGATGTG 279
|||||||||||||||||||||||| |||||| || | | |||| ||| ||||||
Sbjct 240 CTTATCCAAATTTCTGATCTTTGTTGAGAACAAATTGTTCATTTTTTTTTATT-GATGTG 298
Query 280 AGACAAATGGGTTGTTTACATTCCAAAACTGCTAATCTTCCTTCTTCTGATGATCCATCA 339
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 AGACAAATGGGTTGTTTACATTCCAAAACTGCTAATCTACCTTCTTCTGATGATCCATCA 358
Query 340 GCTCCAAACAAACCAGAATCAGTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTC 399
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 359 GCTCCAAACAAACCAGAATCAGTAAATGGGGACCAAGTGGATCAAGAAATCCAAAATTTC 418
Query 400 AAAGAATTTGAACTAAATGAGTTGAGGAAAGCTACCAATGGGTTTAGTCCTAGCTGCATT 459
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 419 AAAGAATTTGAACTAAATGAGTTGAGGAAAGCAACAAATGGGTTTAGCCCTAGCTGCATT 478
Query 460 GTCTCTGAAGGTGGAGAGAAAGCTCCTAATGTCGTTTACAGAGGGAAGCTTGAAGGGAAT 519
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 GTCTCTGAAGGTGGAGAGAAAGCTCCTAATGTGGTTTACAGAGGGAAGCTTGAAGGGAAT 538
Query 520 CATCTTGTAGCTATCAAGCGATTCTCTAGGCAATCTTGGCCTGATGCTCAACAGTTTGTG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CATCTTGTAGCTATCAAGCGATTCTCTAGGCAATCTTGGCCTGATGCTCAACAGTTTGTG 598
Query 580 GTGGAAGCGACTGGTGTTGGGAAGCTTAGAAACAAGAGAATAGTTAGTTTGATCGGTTGC 639
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 599 GTCGAAGCAACTGGTGTTGGGAAGCTTAGAAACAAGAGAATAGTCAGTTTGATTGGTTGC 658
Query 640 TGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCA 699
|| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 659 TGCGCTGAGGGAGATGAGAGATTGTTGGTAGCAGAGTATATGCCCAATGATACTCTCTCA 718
Query 700 AAGCATCTCTTCCACTGGGAAAAGCAGCCACTTCCATGGGATATGCGTGTTCGAATCGCA 759
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAGCATCTCTTTCACTGGGAAAAGCAGCCACTTCCATGGGATATGCGTGTTCGAATCGCA 778
Query 760 GACTATATTGCAGAAGCACTTGATTACTGCAATATTGAGAACCGAAAAATCTATCATGAC 819
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 779 GACTTTATTGCACAAGCACTTGATTACTGCAATATCGAGAACCGAAAAATCTATCATGAC 838
Query 820 CTCAATGCATACAGAATCCTCTTCGACGAGGAAGGTGATCCTCGTCTATCTACTTTTGGT 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTCAATGCATACAGAATCCTCTTCGACGAGGAAGGTGATCCTCGTCTATCTACTTTTGGT 898
Query 880 CTTATGAAGAACAGTAGAGATGGCAAAAGCTATAGCACAAACTTAGCTTATACTCCACCT 939
||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct 899 CTTATGAAGAACAGTAGAGATGGAAAAAGCTACAGTACCAACTTAGCTTATACTCCACCT 958
Query 940 GAGTTTTTACGGACAGGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATT 999
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 959 GAGTTTTTACGGACAGGTAGAGTCATTCCTGAAAGTGTGATCTTCAGTTATGGAACCATT 1018
Query 1000 CTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATGCCCTTGATATCATAAGA 1059
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 CTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATGCTCTTGATATCATAAGA 1078
Query 1060 GGGAAAAATGCTTTGCTTCTTATGGATTCATCTCTTGAAGGGCAATATGCGAATGATGAT 1119
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 GGGAAAAATGCATTGCTTCTTATGGATTCATCTCTTGAAGGGCAATATGCGAATGAAGAT 1138
Query 1120 GCGACTAAATTAGTTGATCTTGCTTCAAAATGCCTTCAATCAGAGGCAAAGGATCGACCA 1179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GCGACTAAATTAGTTGAGCTTGCTTCAAAATGCCTTCAATCAGAGGCAAAGGATCGACCA 1198
Query 1180 GATACCAAATTTCTTCTCTCTGCAGTAGCACCACTACAAAAGCAAGAAGAGGTTGCTTCT 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GATACCAAATTTCTTCTCTCTGCAGTAGCACCACTACAAAAGCAAGAAGAGGTTGCTTCT 1258
Query 1240 CATGTCTTAATGGGCTTACCAAAGAACACAGTAATATTACCAACTATGCTTTCTCCTCTT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATGTCTTAATGGGCTTACCAAAGAACACAGTAATATTACCAACTATGCTTTCTCCTCTT 1318
Query 1300 GGAAAGGCCTGTGCAAAGATGGACCTTGCGACATTTCACGACATTTTGCTTAAAACCGGT 1359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1319 GGAAAGGCCTGTGCAAAGATGGACCTTGCCACATTTCACGACATTTTGCTTAAAACCGGT 1378
Query 1360 TACAGAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAACAAGTG 1419
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TACAGAGACGAGGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAACAAGTG 1438
Query 1420 CAGGAGATGCTTAACACAAAAAAGTTCGGGGACATTGCTTTCAGAGACAAGGATTTCAAG 1479
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1439 CAGGAGATGCTCAACACAAAAAAGTTCGGGGACATTGCTTTCCGAGACAAGGATTTCAAG 1498
Query 1480 AACTCAATTGAATACTACTCCAAGTTGGTGGGGATGATGCCGGTTCCTTCTGCAACAGTT 1539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AACTCAATTGAATACTACTCAAAGTTGGTGGGGATGATGCCGGTTCCTTCTGCAACAGTT 1558
Query 1540 TTCGCTAGACGGGCTTTCTCCTACTTAATGACAGACCAACAGGAGCTTGCACTGAGAGAT 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TTCGCTAGACGGGCTTTCTCCTACTTAATGACAGACCAACAGGAGCTTGCACTGAGAGAT 1618
Query 1600 GCAATGCAGGCACAGGTGTGCATACCAGAATGGCCAACAGCTTTTTACTTGCAGGCTTTA 1659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1619 GCAATGCAGGCACAGGTGTGCATACCCGAATGGCCAACAGCTTTTTACTTGCAGGCTTTA 1678
Query 1660 GCGCTCTCAAAGCTCGGAATGGAGACTGATGCTCAAGATATGCTCAACGATGGCGCTGCA 1719
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1679 GCGCTCTCAAAGCTCGGAATGGAGACGGATGCTCAAGATATGCTCAATGATGGCGCAGCA 1738
Query 1720 TATGATGCTAAGCGACAGAATAGCTGGCGCTGCTAAGCTATTAGA-GGAAGTCCCAAATA 1778
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1739 TATGATGCTAAGCGACAGAATAGCTGGCGCTGCTAAGCTATAAAAAGGAAGTCCCAAATA 1798
Query 1779 TTTATGGGTCTTTTCAGACTGTAACTGAAAGGTGTGTATGCATGTAAGAGAGAGATGGAA 1838
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1799 TTTATGGGTCTTTTCAGACTGTAACTGAAAATTGTGTATGCATGTAAGAGAGAGATTGAA 1858
Query 1839 TGTGTTGTTTACTTTTGTGAAATGAGAGCTTCtttttttGCATGAATCTTTATGAAAAGT 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TGTGTTGTTTACTTTTGTGAAATGAGAGCTTCTTTTTTTGCATGAATCTTTATGAAAAGT 1918
Query 1899 CAAATCTTTTGGGG-AAAGAGAGAATAAGACTGCAAATAACTAATTTGATTCCTTCTTCC 1957
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 CAAATCTTTTGGGGGAAAGAGAGAATAAGACTGCAAATAACTAATTTGATTCCTTCTTCC 1978
Query 1958 TTATGG 1963
||||||
Sbjct 1979 TTATGG 1984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5