BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46590.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494319 jgi|Araly1|494319|fgenesh2_kg.8__135__AT5G46590.1 1375 0.0
> Ahg494319 jgi|Araly1|494319|fgenesh2_kg.8__135__AT5G46590.1
Length=1186
Score = 1375 bits (744), Expect = 0.0
Identities = 847/898 (94%), Gaps = 2/898 (0%)
Strand=Plus/Plus
Query 349 TTGCAAATGGGAAGTTCATGTTTACCTCCAGGGTTCCGGTTTCATCCTACGGATGAAGAA 408
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 290 TTGCAAATGGGAAGTTCATGTTTACCTCCAGGATTCCGGTTTCATCCTACCGATGAAGAA 349
Query 409 CTCATCGAATATTACTTGAAAAGAAAAGTCGAAGGTCTCGAGATTGAGCTTGAAGTCATT 468
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 350 CTCATAGACTATTACTTGAAAAGAAAAGTCGAAGGTCTCGAGATCGAGCTTGAAGTCATT 409
Query 469 CCCGTCATCGATCTTTATAGTTTCGATCCTTGGGAGTTACCAGACAAGTCGTTTCTCCCA 528
|| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 410 CCGGTTATCGATCTTTATAGTTTTGATCCTTGGGAGTTACCAGACAAGTCATTTCTCCCA 469
Query 529 AACCGGGACATGGAATGGTACTTCTTCTGCTCAAGGGACAAAAAATATCCTAATGGTTTT 588
||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 470 AACCGGGACATGGAATGGTTCTTCTTCTGTTCAAGAGACAAAAAATATCCTAATGGTTTC 529
Query 589 CGTACAAATCGAGGAACAAAGGCTGGTTATTGGAAAGCAACCGGAAAAGATCGAAAAATT 648
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 530 CGTACAAACCGAGGAACAAAGGCTGGTTACTGGAAAGCAACCGGAAAAGATCGGAAAATT 589
Query 649 ACTTCTCGTTCATCTTCTATAATTGGTTATAGAAAAACTCTAGTTTTCTACAAAGGCCGT 708
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 590 ACTTCTCGTTCATCTTCTATAATTGGCTATAGAAAAACTCTAGTATTCTACAAAGGTCGT 649
Query 709 GCCCCGTTAGGCGATAGAAGCAATTGGATCATGCATGAATATCGACTATGCGATGATGAT 768
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 650 GCCCCGTTAGGCGATAGAACCAATTGGATAATGCATGAATATCGACTGTGCGACGATGAT 709
Query 769 ACATCACAAGGATCACAAAATTTAAAGGGAGCTTTTGTGTTATGTCGTGTTGCTATGAAG 828
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 710 TCATCACAAGGATCACAAAATTTGAAGGGAGCTTTTGTATTATGTCGTGTTGCTATGAAG 769
Query 829 AATGAGATCAAAACTAATACGAAAATCCGAAAAATTCCAAGCGAGCAAACAATCGGATCA 888
||||| |||||||| ||| | |||||||||||||||||||||||||||||| | |||||
Sbjct 770 AATGAAATCAAAACAAATTCCAAAATCCGAAAAATTCCAAGCGAGCAAACACTTGGATCC 829
Query 889 GGAGAAAGCTCGGGTTTATCAAGCCGAGTAACGTCTCCTAGTCGCGATGAAACAATGCCG 948
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 830 GGAGAAAGCTCTGGTTTTTCAAGCCGAGTAACATCTCCTAGTCGCGATGAAACAATGCCG 889
Query 949 TTTCACTCATTTGCCAATCCTGTATCTACTGAAACTGATTCTTCCAACATTTGGATTTCA 1008
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 890 TTTCACTCATTTGTCAATCCTGTATCTACTGAAACTGACTCTTCCAACATTTGGATTTCA 949
Query 1009 CCTGAATTCATCCTCGATTCTTCAAAGGACTATCCTCAAATCCAAGATGTCGCATCTCAG 1068
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 950 CCTGACTTCATCCTCGATTCTTCAAAGGACTATCCTCAAATCCAAGATGTTGCATCTCAG 1009
Query 1069 TGCTTCCAACAAGACTTTGATTTTCCGATCATCGGTAACCAAAACATGGAGTT-TCCAGC 1127
| ||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||
Sbjct 1010 TACTTCCAACAAGACTTTGATTTTCCGATCATCGGTAACCAAACCATGGA-TTATTCAGC 1068
Query 1128 GAGTACAAGCTTAGATCAGAACATGGATGAGTTTATGCAAAACGGTTATTGGACAAATTA 1187
||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 1069 CAGTACAAGCTTGGATCAGAACATGGATGAGTCTATGCAAACCAGTTATTGGACAAATTA 1128
Query 1188 TGGATACGATCAAACCGGTTTATTCGGTTACTCAGATTTCTCCTAGACGGAAGTATTT 1245
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1129 TGGATACGATCAAACCGGTTTATTCGGTTACTCAGATTTCTCCTAAACGGAAGTATTT 1186
Score = 398 bits (215), Expect = 7e-110
Identities = 275/302 (91%), Gaps = 12/302 (4%)
Strand=Plus/Plus
Query 1 GCTAAGCACTTCTTGTTAGGAAAAATCATTCCTTAATCACTCTCGAAGCTTTCACACCAA 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 GCTAAGCACTTCTTGTTAGGAAAAATCATTCCTTAATCACTTTTGAAGCTTTCACACCAA 60
Query 61 TATTACTTCCTTACTACATCTCTTCATTTTAAAGATTTGTTAGTTACtttttttttttGT 120
||| || | || || | ||| ||||||||||| ||| |||||||| |||||||| |
Sbjct 61 TATCAC-T--TT-CT-TA-CTC-TCATTTTAAAG-TTTTTTAGTTAC---TTTTTTTT-T 108
Query 121 TATTGTACGAAATAATTTGTTTTCTTTCAGACAATGTTCTTGTCACACAAAGAATACAAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 109 TATTGTACGAAATAATTTGTTTTCTTTCAAACAATGTTCTTGTCACACAAAGAATACAAT 168
Query 181 CGACTTGACTTGCAATTTTTTCTAAACAACAAATCCAGCATCGAGAAAAGTTTCTATTTT 240
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 169 CGACTTGACTTGCAATTTTTTCTAAACAACAAATCGAGTGTCGAGAAAAGTTTCTATTTC 228
Query 241 TGGATTTTCCAAATATTAACAGTTATAGCTTCGTGACTTCAAGAAATATCCATTTCAAGA 300
||||||||||||||||||||||||||||||||||||| | || ||||||| || ||||||
Sbjct 229 TGGATTTTCCAAATATTAACAGTTATAGCTTCGTGACGTAAATAAATATCAATATCAAGA 288
Query 301 TT 302
||
Sbjct 289 TT 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5