BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46600.1
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356337 jgi|Araly1|356337|fgenesh1_pg.C_scaffold_8000124 2366 0.0
Ahg493074 jgi|Araly1|493074|fgenesh2_kg.7__2507__AT4G17970.1 715 0.0
> Ahg356337 jgi|Araly1|356337|fgenesh1_pg.C_scaffold_8000124
Length=1635
Score = 2366 bits (1281), Expect = 0.0
Identities = 1524/1642 (93%), Gaps = 13/1642 (1%)
Strand=Plus/Plus
Query 97 ATGGGGTACAAGGTCGAAGCACGGAGCATGGAGATTTCCATGgaagatgaagattctaga 156
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGAACAAGGTCGAAGCACGGAGCATGGAGATTTCCATGGAAGATGAAGATTCTAGA 60
Query 157 aagaagagaaagaagggtctaaatcttccgaagaagatgaagaagattctaaggaaTCTA 216
|||||||||||||| | |||||| |||||||||||||||||||||| ||||| |||||||
Sbjct 61 AAGAAGAGAAAGAATGTTCTAAAACTTCCGAAGAAGATGAAGAAGACTCTAAAGAATCTA 120
Query 217 TGGAATGTGGGAAAGGAAGATCCGAGGAGAGTGATACATGCTTTGAAAGTAGGAGTTGCC 276
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAATGTGGGAAAAGAAGATCCGAGGAGAGTGATACATGCTTTGAAAGTAGGAGTTGCC 180
Query 277 TTAACGCTTGTGTCTTTATTGTATCTCATGGAACCTTTTTTCGAAGGTGTTGGAAAAAAT 336
||||| ||||||||||||||||||||||||||||| || ||| ||||||||| |||||||
Sbjct 181 TTAACACTTGTGTCTTTATTGTATCTCATGGAACCATTCTTCAAAGGTGTTGTAAAAAAT 240
Query 337 GCTCTTTGGGCAGTCATGACCGTCGTTGTGGTTCTTGAGTTCTCTGCCGGTGCAACATTA 396
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 GCACTTTGGGCAGTCATGACCGTCGTTGTCGTTCTCGAGTTCTCTGCCGGTGCAACATTA 300
Query 397 CGCAAGGGATTAAATAGAGGATTAGGGACACTAATAGCAGGATCTTTGGCATTCTTTATT 456
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CGCAAAGGATTAAATAGAGGATTAGGGACACTAATAGCAGGATCTTTGGCATTTTTTATT 360
Query 457 GAGTGGGTTGCTATTCATTCCGGTAAAATTCTCGGAGGTATCTTCATTGGCACTTCTGTT 516
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GAGTGGGTTGCTATTCATTCCGGTAAAATCCTCGGAGGTATCTTCATTGGCACTTCTGTT 420
Query 517 TTCACCATCGGATCGATGATAACATACATGAGATTTATTCCGTACATAAAGAAAAACTAC 576
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCATCATCGGATCGACGATAACATACATGAGATTTATTCCGTACATAAAGAAAAACTAT 480
Query 577 GATTACGGCATGCTTGTATTTCTTTTGACGTTTAATCTAATCACAGTATCAAGTTATAGA 636
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 481 GACTACGGTATGCTTGTATTTCTTTTGACGTTTAATCTAATCACAGTATCGAGTTACAGA 540
Query 637 GTGGATACTGTGATTAAGATCGCGCATGA-GAGATTATATACCATTGGTATGGGTATTGG 695
|| |||||||||||||||||||| ||| | |||||||||||| |||||||| ||||| ||
Sbjct 541 GTCGATACTGTGATTAAGATCGCACAT-ACGAGATTATATACTATTGGTATTGGTATCGG 599
Query 696 CATTTGCCTCTTCATGAGCCTTCTG-TTTTTCCCGATCTGGTCTGGTGATGACCTTCACA 754
|||||| ||| ||||||||||| || ||||||| ||| |||||||| ||||||||||| |
Sbjct 600 CATTTGTCTCGTCATGAGCCTTTTGGTTTTTCC-GATATGGTCTGGCGATGACCTTCATA 658
Query 755 AATCAAC-TATTACTAAGCTCCAAGGCCTCTCTCGATGTATTGAAGCATGTGTG-AGTGA 812
|||| || | ||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 659 AATCCACCT-TTACTAAGCTCCAAGGCCTCTCTCGATGTATAGAAGCATGTGTGCA-TGA 716
Query 813 GTATTTTGAGGAGAAGCTGAAAGAC-AACGAAACATCAGATTCTGAATCTGATGATGAAG 871
|||||||||||| ||| ||||||| || ||| |||| ||||||||||||||||||||||
Sbjct 717 GTATTTTGAGGACAAGGAGAAAGACCAA-GAATCATCGGATTCTGAATCTGATGATGAAG 775
Query 872 ACCTAATCTACAACGGGTATAATACTGTTTTGGATTCTAAATCCGCCGACGAAGCGCTCG 931
||||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 776 ACCTAATCTACAAAGGGTATAAGACTGTTTTGGATTCTAAATCCGCTGATGAAGCACTCG 835
Query 932 CAATGTATGCAAAGTGGGAGCCAAGACACACAAGGCGTTGCAACAAATTTCCATCCCAAC 991
|||||| |||||| ||||||| |||| |||||| || |||| | ||||||||||| ||||
Sbjct 836 CAATGTTTGCAAAATGGGAGCTAAGAAACACAAAGCTTTGCCATAAATTTCCATCTCAAC 895
Query 992 AATATATCAAAGTTGGATCCGTTCTTCGCAAGTTTGGTTACACTGTTGTTGCTCTTCACG 1051
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 896 AATATATCAAAGTTGGATCCGTTCTTCGCAAGTTTAGTTACACTGTTGTTGCTCTTCATG 955
Query 1052 GTTGCTTACAAACCGAGATTCAGACTCCAAGGTCTATCCGTGTCCTCTTCAAAGATCCTT 1111
| ||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 956 GCTGCTTACAAACTGAGATTCAGACTCCAAGGTCTATTCGTATCCTATTCAAAGATCCTT 1015
Query 1112 GTGTTAGACTAGCCGGAGAAATCTGCAAAGTTTTATCAGAACTCTCCGAAAGCATTCAAA 1171
||||||||||||||||||||||||||||||| || || ||||||||||||| |||| |||
Sbjct 1016 GTGTTAGACTAGCCGGAGAAATCTGCAAAGTCTTGTCTGAACTCTCCGAAAACATTAAAA 1075
Query 1172 ACCGACGTCATTGCTCGTCGGAGATTCTCTCCGACAGTCTCGAAGCGGCATTAAAAGATC 1231
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACCGACGTCAATGCTCACCGGAGATTCTCTCCGACAGTCTCGAAGCGGCATTAAAAGATC 1135
Query 1232 TCAACTCCACAATCAAGTCACAACCTAAGCTCTTCTTAGGCTCTAACCTTCATAGTAACA 1291
||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1136 TCAACTCTACAATCAAATCACAACCTAAGCTCTTCTTAGGCTCTAACCTTCACAGTAACA 1195
Query 1292 TCACTAACAAGCACCTAAACGGCCACGTTTCATATTACAACGAAACTAACTCAAACGGCA 1351
|||||||||| |||||||||||| |||||||| |||||||||| ||||||||| ||||||
Sbjct 1196 TCACTAACAAACACCTAAACGGCGACGTTTCACATTACAACGATACTAACTCACACGGCA 1255
Query 1352 CCGTTTCATATCACAACGATAATAACACAAACGGCTGCGTTTTGGGAGAAACTATAGAAG 1411
||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1256 TCGTTTCATATCACAATGATAATAACTCAAACGGCTGCGTTTTGGGACAAACTGTAGAAC 1315
Query 1412 AGAACGACACCGTATCACCACTTCCGTTAAACAGCGTTGTTTCACTCTCTAGCTTAAGAT 1471
|||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||| |||
Sbjct 1316 AGAACGACACCGTATCGCCACTTCCATTAAACAGCGTCGTTTCACTCTCTACCTTGCGAT 1375
Query 1472 CGGTGAAGAAATCGGCGGCGACCGGAGAGAAGAGGAGATTGAGGAAACAATTGAGCAAAA 1531
||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 1376 CGGTGAAGAAATCGGCGGCGATCGGCGAAAAGAGGAGATTGAGGAAACAATTGAGCAAAA 1435
Query 1532 TCGCGGTTATGAAAAGTTTGGAGTTTTCGGAAGCGTTACCATTTGCTGCGTTTGCGTCAC 1591
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
Sbjct 1436 TCGCGGTTATGAAAAGTTTGGAGTTTTCAGAAGCGTTACCAGTTGCTGCGTTTGCGTCGC 1495
Query 1592 TTCTTGTGGAAATGGTTGCGAGGCTTGATACTGTGATTGATGAGGTTGAGGAATTGGGAA 1651
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1496 TTCTTATGGAAATGGTTGCGAGGCTTGATATTGTGATTGATGAGGTTGAGGAATTGGGAA 1555
Query 1652 CAATCGCCTGCTTTAAGGAGTACGATAAGACTGTGGAGGTGCGAATTGAGAA-CCGGTTA 1710
| ||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 1556 CGATCGCCTGCTTCAAGGAGTACGATAAGACTGTGGAGGTGCGAGTCGAGAAACCGGTTA 1615
Query 1711 ATCTAGTGGTTGTGTAGATTGA 1732
|||||||||||| | |||||||
Sbjct 1616 ATCTAGTGGTTG-G-AGATTGA 1635
> Ahg493074 jgi|Araly1|493074|fgenesh2_kg.7__2507__AT4G17970.1
Length=1724
Score = 715 bits (387), Expect = 0.0
Identities = 901/1141 (79%), Gaps = 68/1141 (6%)
Strand=Plus/Plus
Query 174 tcta-aatcttccgaagaagatgaagaagat-tctaaggaa-TCTATGGAATGTGGGAAA 230
|||| || |||| | ||||||| |||| ||| | || || || |||| ||| |||||
Sbjct 101 TCTAGAACCTTCTG-AGAAGATCAAGAGGATACCGAA--AAGGCTTTGGAGTGTCGGAAA 157
Query 231 GGAAGATCCGAGGAGAGTGATACATG-CTTTGAAAGTAGGAGTTGCCTTAACGCTTGTGT 289
||||||||||||||||||||||||| | || |||||||| || || | || ||||| |
Sbjct 158 AGAAGATCCGAGGAGAGTGATACATGCCCTT-AAAGTAGGTCTTTCCATGACACTTGTAT 216
Query 290 CTTTATTGTATCTCATGGAACCTTTTTTCGAAGGTGTTGGAAAAAATGCTCTTTGGGCAG 349
|||| || ||||||||||| ||| | |||||||| |||||| |||||| ||||||| |
Sbjct 217 CTTTGTTATATCTCATGGAGCCTCTCTTCGAAGGCATTGGAAGCAATGCTATTTGGGCCG 276
Query 350 TCATGACCGTCGTTGTGGTTCTTGAGTTCTCTGCCGGTGCAACATTACGC-AAGGGATTA 408
||||||| ||||| || || ||||||||||||||||||||||| || || ||||| ||
Sbjct 277 TCATGACAGTCGTCGTCGTCCTTGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGCTT- 335
Query 409 AATAGAGGATTAGGGACACTAATAGCAGGATCTTTGGCATTCTTT-ATTGAGTGGGTTGC 467
||||||||||||||||||||||| || |||||||||||||| ||| ||||||| || ||
Sbjct 336 AATAGAGGATTAGGGACACTAATTGCGGGATCTTTGGCATT-TTTCATTGAGTTTGTAGC 394
Query 468 TATTCATTCCGGTAAAATTC-TCGGAGGTATCTTCATTGGCACTTCTGTTTTCACCATCG 526
|| | ||||||| ||| | | || ||| ||| |||||||||||| ||||||| ||| |
Sbjct 395 TAATGATTCCGGCAAAGTCCTTC-GAGCTATTTTCATTGGCACTGCTGTTTTTGTCATTG 453
Query 527 GATC-GATGATAACATACATGAGATTTATTCCGTACATAAAGAAAAACTACGATTACGGC 585
|| | | || ||| || || |||||||| || ||||||||||| || |||||||| ||
Sbjct 454 GAGCGGCTG-CAACTTATATAAGATTTATACCATACATAAAGAAGAATTACGATTATGG- 511
Query 586 ATGCT-TG-TATTTCTTTTGACGTTTAATCTAATCACAGTATCAAGTTATAGAGTGGATA 643
|| | || ||||||| |||||||| ||||| || || || ||||| ||| |||| ||||
Sbjct 512 -TGTTGTGATATTTCTCTTGACGTTCAATCTTATAACGGTGTCAAGCTATCGAGTAGATA 570
Query 644 CTGTGATTAAGATCGCGCATGAGAGATTATATACCATTGGTATGGGTAT-TGGCATTTGC 702
|||||| || || || || || ||||| || || || | || ||| | || || ||
Sbjct 571 GTGTGATAAACATAGCACACGATAGATTCTACACTATAGCCATTGGT-TGCGGAATCTGT 629
Query 703 CTCTTCATGAGCCTTC-TGTTTTTCCCGATCTGGTCTGGTGATGACCTTCACAA-ATCAA 760
|| ||||||||||||| ||||||| || || ||||||||||| || || ||||| | | |
Sbjct 630 CTTTTCATGAGCCTTCTTGTTTTT-CCTATTTGGTCTGGTGAAGATCTACACAAGA-CCA 687
Query 761 CTATTACTAAGCTCCAAGGCCTCTCTCGATGTATTGAAGCATGTGTGAGTGAGTATTTTG 820
| || ||| ||||||||||| ||||| | ||||||||||||||||| |||||| ||||
Sbjct 688 CCGTTGGTAAACTCCAAGGCCTTTCTCGCTCTATTGAAGCATGTGTGAATGAGTACTTTG 747
Query 821 AGGAG-AAGCTGAAAGACAACGAAACATCAGATTCTGAATCTGATGATGAAGACCTAATC 879
||||| ||| ||||| || ||| | |||| | || | | ||||| ||||
Sbjct 748 AGGAGAAAG-AGAAAG--AA--AAA-A-CAGA---T---TC--A--A--AAGACAGAATC 788
Query 880 TAC-AACGGGTAT-AATACTGTTTTGGATTCTAAATCCGCCGACGAAGCGCTCGCAATGT 937
||| || |||||| || |||||||||||||||||||| | || ||| | || ||| | |
Sbjct 789 TACGAA-GGGTATCAA-GCTGTTTTGGATTCTAAATCCACTGATGAAACACTTGCATTAT 846
Query 938 ATGCAAAGTGGGAGCCAAGACACACAAGGCGTTG-CAACAAATTTCCATCCCAACAATAT 996
||||||| |||||||| ||||||||| ||||| | | | |||||||| |||||||||
Sbjct 847 ATGCAAATTGGGAGCCGAGACACACACTACGTTGTC-ATAGATTTCCATGTCAACAATAT 905
Query 997 ATCAAAGTTGGATCCGTTCTTCG-CAAGTTTGGTTACACTGTTGTTGCTCTTCACGGTTG 1055
| ||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 906 GTTAAAGTTGGAGCTGTTCTTCGTCAA-TTTGGTTACACTGTTGTTGCTCTTCACGGTTG 964
Query 1056 CTTACAAACCGAGATTCAGACTCCAAGGTCTATCCGTGTC-CTCTTCAAAGATCCTTGTG 1114
|||||||||||||||||| |||||||| ||| | || | | || ||||||||||||||||
Sbjct 965 CTTACAAACCGAGATTCAAACTCCAAGATCTGTTCGCG-CGCTTTTCAAAGATCCTTGTG 1023
Query 1115 TTAGACTAGCCGGAGAAATCTGCAAAGTTTT-ATCAGAACTCTCCGAAAGCAT-TCAAAA 1172
| ||| ||||||||||| | ||||||| ||| | | |||||| | || ||||| |||||
Sbjct 1024 TAAGATTAGCCGGAGAAGTATGCAAAGCTTTGA-CGGAACTCGCGGATAGCATCTCAAA- 1081
Query 1173 CCGAC-GTCATTGCTCGTCGGAGATTCTCTCCGA-CAGTCTCGAAGCGGCA-TTAAAAGA 1229
|| || |||| || || |||| ||||| ||||| || |||| | | |||| || || ||
Sbjct 1082 CC-ACCGTCACTGTTCACCGGAAATTCTATCCGATCA-TCTCCACGTGGCACTTCAA-GA 1138
Query 1230 TCTCAACTCCACAATCAAGTCACAACCTAAGCTCTTC-TTAGGCTCTAACCTTCATAGTA 1288
||| || ||| | |||||||| || ||||| |||||| || || ||||| || ||| |||
Sbjct 1139 TCTTAATTCCGCCATCAAGTCTCAGCCTAAACTCTTCCTT-GGTTCTAATCTCCATCGTA 1197
Query 1289 A 1289
|
Sbjct 1198 A 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71152577660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5