BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46610.1
Length=2123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494317 jgi|Araly1|494317|fgenesh2_kg.8__133__AT5G46610.2 2525 0.0
Ahg356337 jgi|Araly1|356337|fgenesh1_pg.C_scaffold_8000124 968 0.0
Ahg493074 jgi|Araly1|493074|fgenesh2_kg.7__2507__AT4G17970.1 920 0.0
> Ahg494317 jgi|Araly1|494317|fgenesh2_kg.8__133__AT5G46610.2
Length=1911
Score = 2525 bits (1367), Expect = 0.0
Identities = 1652/1786 (92%), Gaps = 34/1786 (2%)
Strand=Plus/Plus
Query 37 AAAAACAATGTCGGA-CAGGGTCCATGAAAGGAGCATGGGA-ATGGAGGAAGAAGGCTCT 94
||||| |||||| || ||| |||||||||||| |||| ||| ||||| || |||||||||
Sbjct 51 AAAAAGAATGTC-GAGCAGAGTCCATGAAAGGGGCAT-GGAGATGGATGAGGAAGGCTCT 108
Query 95 ACTAA-A--AACATGAAGACAAAGGTTCTT-GAACTTCCAACAAAGATCAAGAAGATTCT 150
|| || | || |||||||| |||||| || ||||||||||| |||||||||||||||||
Sbjct 109 ACAAAGATGAAGATGAAGACGAAGGTT-TTAGAACTTCCAACGAAGATCAAGAAGATTCT 167
Query 151 AAAGAATATATGGAAAGTTGGAAAAGATGATCCAAGGAGAGTGAAACATGCTTTGAAAGT 210
||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 168 AAAGAGTATATGGAAAGTTGGAAAAGATGATCCTAGGAGAGTGAAACATGCTTTAAAAGT 227
Query 211 AGGAGTTTCGTTAACACTTGTGTCTTTATTGTATCTCATGGAGCCTCTCTTCAAAGGCAT 270
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 228 AGGAGTTTCTTTAACACTTGTGTCCTTATTGTATCTCATGGAGCCTCTCTTCAAAGGCAT 287
Query 271 TGGAAACAGTGCTATTTGGGCAGTCATGACCGTTGTTGTCGTCCTAGAGTTCTCTGCCGG 330
|||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 288 TGGAAATAGTGCTATTTGGGCAGTCATGACCGTCGTGGTCGTCCTCGAGTTCTCTGCCGG 347
Query 331 TGCAACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACACTAATTGCTGGATCTTTGGC 390
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TGCCACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACACTAATTGCTGGATCTTTGGC 407
Query 391 ATTTTTCATAGAATTTGTGGCTAATGATTCCGGCAAGATTTTCCGAGCTATTTTCATTGG 450
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATTTTTCATCGAATTTGTCGCTAATGATTCCGGCAAGATTTTCCGAGCTATTTTCATTGG 467
Query 451 CGCCGCAGTTTTTATCATTGGAGCGTTGATAACATATCTGAGATTTATTCCATACATTAA 510
||| |||||||| || || |||||| ||||||| ||| ||||||||||||||||||| ||
Sbjct 468 CGCTGCAGTTTTCATAATCGGAGCGCTGATAACCTATTTGAGATTTATTCCATACATAAA 527
Query 511 AAAGAACTACGATTACGGCATGCTTATATTTCTCTTGACGTTCAATCTAATAACAGTATC 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 528 AAAGAACTACGATTACGGCATGCTTATATTTCTCTTGACGTTCAATCTAATAACAGTGTC 587
Query 571 GAGTTATAGAGTTGATACCGTGATTAAAATTGCACATGAGAGATTCTATACTATAGCCAT 630
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GAGTTATAGAGTTGATACGGTGATTAAAATTGCACATGAGAGATTCTATACTATAGCCAT 647
Query 631 GGGTGTTGGTATTTGTCTGCTCATGAGCCTTTTGGTTTTTCCTATTTGGTCTGGTGAGGA 690
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GGGTGTTGGCATTTGCCTACTCATGAGCCTTTTGGTTTTTCCTATTTGGTCTGGTGAGGA 707
Query 691 CCTTCACAAATCCACCGTCGCTAAGCTT-CAAGGCCTCTCCTATTCCATCGAAGCATGTG 749
||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct 708 CCTTCACAAATCCACCGTCGCTAAG-TTCCAAGGCCTCTCTTATTCCATTGAAGCATGTG 766
Query 750 TGAATGAGTACTTTGAAGAGGAGGAGAAAGACGAAGAAACATCAGATTTGTCAGAAGACA 809
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 767 TGAATGAGTACTTTGAAGAGGAGGAGAAAAACGAAGAAACATCAGATTTATCAGAAGACA 826
Query 810 CGATCTATAACGGATATAAGACTGTTTTGGATTCCAAATCCGCCGATGAAGCACTTGCAA 869
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CTATCTATAACGGATATAAGACTGTTTTGGATTCCAAATCCGCCGATGAAGCACTTGCAA 886
Query 870 TGTATGCAAGTTGGGAGCCAAGACACACACGACATTGTCATAGATTTCCATGGAAACATT 929
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 887 TGTATGCAAGTTGGGAGCCAAGACACACAAGACATTGTCATAGATTTCCATGGAAACATT 946
Query 930 ATGTTAAAGTTGGATCTGTTCTTCGTCAGTTTGGTTACACTGTTGTTGCTCTTCATGGTT 989
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 947 ATGTTAAAGTTGGATCTGTTCTTCGTCTGTTTGGTTACACTGTTGTTGCTCTTCATGGTT 1006
Query 990 GCTTAAAAACCGAAATTCAGACTCCGAGGCCTCTCCGTGGACTCTTCAAGGATCCTTGCG 1049
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1007 GCTTAAAAACCGAAATTCAGACTCCGAGGTCTCTTCGTGGACTCTTCAAGGATCCTTGCG 1066
Query 1050 TACGACTAGCTGGAGAAATCTGCAAGGTTTTATCGGAACTTGCCGCAAGCATTAGAAACC 1109
|| ||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 1067 TAAGACTAGCCGGAGAAATCTGCAAGGTTTTGTCCGAACTCGCTGCAAGCATTAGAAACC 1126
Query 1110 GACGTCACTGTTCCCCGGAGATTCTCTCCGACAGTCTCCAAGTGGCATTACAAGATCTCA 1169
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1127 GACGTCACTGCTCGCCGGAGATTCTTTCCGACAGTCTCCAAGTGGCATTACAAGATCTCA 1186
Query 1170 ACACAGCCATTAAATCACAACCTAAACTCTTCCTCGGCTCTAGCCAAAACGGCAACGTGT 1229
|||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||| |
Sbjct 1187 ACACAGCCATTAAATCCCAACCTAAACTCTTCCTCGGCGCTAACCAAACCGGCAACGTTT 1246
Query 1230 CTCAAGGAAATAGCGGTAGACATAACCCCAACGTTGCAGTTTCACAACACATTAATAAAG 1289
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1247 CTCAAGGCAATAGCGGTAGACATAACCCTAACGTTGCAGTTTCACAACACATCAATAAAG 1306
Query 1290 ACACAAACGAGGCCGCTTC----------GTATCA-------A--AA--CACTGGAACGC 1328
|||||||||| || ||||| |||||| | || ||||||||| |
Sbjct 1307 ACACAAACGATGCTGCTTCACATCAAACCGTATCACGTCTTGAGCAAAACACTGGAACAC 1366
Query 1329 CACGTGGTGAACGCATGTCACGTTTTGGACCAAACGTTTCGTTTTCTAGATTGAGGGCTG 1388
|||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1367 CACGCGGGGAACGCTTGTCACGTTTTGGACCAAACGTCTCGTTTTCTAGATTGAGGGCTG 1426
Query 1389 ATACGTTAGAACGAAGATCGGCGGCAGCGACTAACGAAAGAAAGATTCTGAGGCAACAAT 1448
||||||||||||| ||||| || ||||||| |||||| || ||||| ||||||||||| |
Sbjct 1427 ATACGTTAGAACGGAGATCCGCTGCAGCGATTAACGAGAGGAAGATCCTGAGGCAACAGT 1486
Query 1449 TGAGCAGGATTGTGGTGTTGACGAGTCTTGAATTCTCGGAGGCGTTACCATTTGCGGCTT 1508
|||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||| || |
Sbjct 1487 TGAGCAAGATTGTGGTGATGACGAGTCTTGAATTCTCTGAGGCGTTACCGTTTGCTGCGT 1546
Query 1509 TTGCGTCACTACTAGTGGAAATGGTTGCTAGGCTTGACAATGTGATTGAGGAAGTGGAGG 1568
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1547 TTGCGTCACTTCTAGTGGAAATGGTTGCTAGGCTTGACAATGTGATAGAGGAAGTGGAGG 1606
Query 1569 AGCTAGGAACGATCGCCTGCTTTAAGGATTATGATAACAACGTTGATCAGAAGGATGTGG 1628
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1607 AACTAGGAACGATTGCCTGCTTTAAGGAGTATGATAACAACGTTGATCAGAAGGATGTGG 1666
Query 1629 AGGTTCGAGTCGAGAAGCCGGCAGACCTAGTGGTTGGCGTGGAGTGAAAATGCGGTTGCG 1688
|||| ||||||||||| |||| || |||||||||||||| |||||||||||| ||||||
Sbjct 1667 AGGTCCGAGTCGAGAAACCGGTTGATCTAGTGGTTGGCGTAGAGTGAAAATGCTGTTGCG 1726
Query 1689 GACAGTTTTGGTTTGGACCATGTCCATGTCGCTAGTATTCAACATCATGATATCTTTAAA 1748
|||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||
Sbjct 1727 AACAGTTTTGGTTTGGACCATATCCATGTCGCTAGTAACCAACATCATGAT--CTTTAAA 1784
Query 1749 ACTATTTTTGGTACTATACCAATTGAACTACATATTCCGGATTATA 1794
|||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 1785 ACTATTTTTGGTACTACACCAATTGAGCTACATATTCCGGGTTATA 1830
> Ahg356337 jgi|Araly1|356337|fgenesh1_pg.C_scaffold_8000124
Length=1635
Score = 968 bits (524), Expect = 0.0
Identities = 928/1120 (83%), Gaps = 39/1120 (3%)
Strand=Plus/Plus
Query 116 GTTCTTGAACTTCC-AACAAAGATCAAGAAGATTCTAAAGAATATATGGAAAGTTGGAAA 174
||||| ||||||| || ||||| ||||||| |||||||||| ||||||| || |||||
Sbjct 76 GTTCTAAAACTTCCGAA-GAAGATGAAGAAGACTCTAAAGAATCTATGGAATGTGGGAAA 134
Query 175 AGATGATCCAAGGAGAGTGAAACATGCTTTGAAAGTAGGAGTTTCGTTAACACTTGTGTC 234
||| ||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 135 AGAAGATCCGAGGAGAGTGATACATGCTTTGAAAGTAGGAGTTGCCTTAACACTTGTGTC 194
Query 235 TTTATTGTATCTCATGGAGCC-TCTCTTCAAAGGCATTGGAAACAGTGCTA-TTTGGGCA 292
|||||||||||||||||| || | |||||||||| ||| ||| | ||| | ||||||||
Sbjct 195 TTTATTGTATCTCATGGAACCAT-TCTTCAAAGGTGTTGTAAAAAATGC-ACTTTGGGCA 252
Query 293 GTCATGACCGTTGTTGTCGTCCTAGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGCTT 352
||||||||||| |||||||| || |||||||||||||||||||| || ||||||| ||
Sbjct 253 GTCATGACCGTCGTTGTCGTTCTCGAGTTCTCTGCCGGTGCAACATTACGCAAAGGA-TT 311
Query 353 AA-TAGAGGATTAGGGACACTAATTGCTGGATCTTTGGCATTTTTCATAGAATTTGTGGC 411
|| ||||||||||||||||||||| || ||||||||||||||||| || || | || ||
Sbjct 312 AAATAGAGGATTAGGGACACTAATAGCAGGATCTTTGGCATTTTTTATTGAGTGGGTTGC 371
Query 412 TAATGATTCCGGCAAGATTTTCCGAGCTATTTTCATTGGCGCCGCAGTTTTTATCATTGG 471
|| | ||||||| || || || ||| ||| ||||||||| | | ||||| ||||| ||
Sbjct 372 TATTCATTCCGGTAAAATCCTCGGAGGTATCTTCATTGGCACTTCTGTTTTCATCATCGG 431
Query 472 AGCGTTGATAACATATC-TGAGATTTATTCCATACATTAA-AAAGAACTACGATTACGGC 529
| || ||||||||| | ||||||||||||| ||||| || ||| ||||| || |||||
Sbjct 432 ATCGACGATAACATA-CATGAGATTTATTCCGTACATAAAGAAA-AACTATGACTACGGT 489
Query 530 ATGCTTATATTTCTCTTGACGTTCAATCTAATAACAGTATCGAGTTATAGAGTTGATACC 589
|||||| ||||||| |||||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 490 ATGCTTGTATTTCTTTTGACGTTTAATCTAATCACAGTATCGAGTTACAGAGTCGATACT 549
Query 590 GTGATTAAAATTGCACATGA-GAGATTCTATACTATAGCCATGGGTGTTGGTATTTGTCT 648
|||||||| || |||||| | |||||| |||||||| | || ||| | || ||||||||
Sbjct 550 GTGATTAAGATCGCACAT-ACGAGATTATATACTATTGGTATTGGTATCGGCATTTGTCT 608
Query 649 -GCTCATGAGCCTTTTGGTTTTTCCTATTTGGTCTGGTGAGGACCTTCACAAATCCACCG 707
| |||||||||||||||||||||| || |||||||| || |||||||| |||||||||
Sbjct 609 CG-TCATGAGCCTTTTGGTTTTTCCGATATGGTCTGGCGATGACCTTCATAAATCCACCT 667
Query 708 TCGCTAAGCTTCAAGGCCTCTC-CTAT-TCCATCGAAGCATGTGTGAATGAGTACTTTGA 765
| ||||||| ||||||||||| | || | || |||||||||||| ||||||| |||||
Sbjct 668 TTACTAAGCTCCAAGGCCTCTCTCGATGT--ATAGAAGCATGTGTGCATGAGTATTTTGA 725
Query 766 AGAGGAGGAGAAAGACGAAGAAACATCAGATT-TG--TCAGA--A-GAC-ACG-A-TCTA 816
|| ||||||||||| ||||| |||| |||| || || || | || || | ||||
Sbjct 726 GGACAAGGAGAAAGACCAAGAATCATCGGATTCTGAATCTGATGATGAAGACCTAATCTA 785
Query 817 TAACGGATATAAGACTGTTTTGGATTCCAAATCCGCCGATGAAGCACTTGCAATGTATGC 876
|| || |||||||||||||||||||| |||||||| ||||||||||| ||||||| |||
Sbjct 786 CAAAGGGTATAAGACTGTTTTGGATTCTAAATCCGCTGATGAAGCACTCGCAATGTTTGC 845
Query 877 AAGTTGGGAGCCAAGACACACAC-GACATTGTCATAGATTTCCATGGAAACATTATGTTA 935
|| ||||||| |||| ||||| | | ||| |||| |||||||| |||| ||| | |
Sbjct 846 AAAATGGGAGCTAAGAAACACAAAG-CTTTGCCATAAATTTCCATCTCAACAATATATCA 904
Query 936 AAGTTGGATCTGTTCTTCGTCA-GTTTGGTTACACTGTTGTTGCTCTTCATGGTTGCTTA 994
|||||||||| |||||||| || |||| ||||||||||||||||||||||||| ||||||
Sbjct 905 AAGTTGGATCCGTTCTTCG-CAAGTTTAGTTACACTGTTGTTGCTCTTCATGGCTGCTTA 963
Query 995 AAAACCGAAATTCAGACTCCGAGGCCTCTCCGTGGACTCTTCAAGGATCCTTGCGT-ACG 1053
|||| || ||||||||||| ||| || | ||| || ||||| |||||||| || | |
Sbjct 964 CAAACTGAGATTCAGACTCCAAGGTCTATTCGTATCCTATTCAAAGATCCTTGTGTTA-G 1022
Query 1054 ACTAGCTGGAGAAATCTGCAAGGTTTTATCGGAACT-TGCCGCAAGCATTAGAAACCGAC 1112
|||||| |||||||||||||| || || || ||||| | ||| || ||||| ||||||||
Sbjct 1023 ACTAGCCGGAGAAATCTGCAAAGTCTTGTCTGAACTCT-CCGAAAACATTAAAAACCGAC 1081
Query 1113 GTCACTGTTCCCCGGAGATTCTCTCCGACAGTCTCCAAGTGGCATTACAAGATCTCAACA 1172
|||| || || |||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 1082 GTCAATGCTCACCGGAGATTCTCTCCGACAGTCTCGAAGCGGCATTAAAAGATCTCAACT 1141
Query 1173 C-AGCCATTAAATCACAACCTAAACTCTTCCTCGGCTCTA 1211
| | | || |||||||||||||| |||||| | |||||||
Sbjct 1142 CTA-CAATCAAATCACAACCTAAGCTCTTCTTAGGCTCTA 1180
> Ahg493074 jgi|Araly1|493074|fgenesh2_kg.7__2507__AT4G17970.1
Length=1724
Score = 920 bits (498), Expect = 0.0
Identities = 924/1122 (82%), Gaps = 59/1122 (5%)
Strand=Plus/Plus
Query 115 GGTTCTTGAA-CTTCCAACAAAGATCAAGAAGAT-TC-TAAAGAATATATGGAAAGTTGG 171
|||||| ||| |||| | |||||||||| ||| | |||| | | |||| || ||
Sbjct 98 GGTTCTAGAACCTTCTGA-GAAGATCAAGAGGATACCGAAAAGGCT-T-TGGAGTGTCGG 154
Query 172 AAAAGATGATCCAAGGAGAGTGAAACATG-CTTTGAAAGTAGGAGTTTCGTTAACACTTG 230
|||||| ||||| |||||||||| ||||| | || |||||||| |||| | |||||||
Sbjct 155 AAAAGAAGATCCGAGGAGAGTGATACATGCCCTT-AAAGTAGGTCTTTCCATGACACTTG 213
Query 231 TGTCTTTATTGTATCTCATGGAGCCTCTCTTCAAAGGCATTGGAAACAGTGCTATTTGGG 290
| ||||| || ||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 214 TATCTTTGTTATATCTCATGGAGCCTCTCTTCGAAGGCATTGGAAGCAATGCTATTTGGG 273
Query 291 CAGTCATGACCGTTGTTGTCGTCCTAGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGC 350
| |||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 274 CCGTCATGACAGTCGTCGTCGTCCTTGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGC 333
Query 351 TTAATAGAGGATTAGGGACACTAATTGCTGGATCTTTGGCATTTTTCATAGAATTTGTGG 410
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 334 TTAATAGAGGATTAGGGACACTAATTGCGGGATCTTTGGCATTTTTCATTGAGTTTGTAG 393
Query 411 CTAATGATTCCGGCAAGATT--TTCCGAGCTATTTTCATTGGCGCCGCAGTTTTTATCAT 468
|||||||||||||||| | | ||| ||||||||||||||||| | || |||||| ||||
Sbjct 394 CTAATGATTCCGGCAA-AGTCCTTC-GAGCTATTTTCATTGGCACTGCTGTTTTTGTCAT 451
Query 469 TGGAGCGT-TGATAACATATCTGAGATTTATTCCATACATTAAA-AAGAACTACGATTAC 526
||||||| || ||| ||| | |||||||| |||||||| ||| ||||| ||||||||
Sbjct 452 TGGAGCGGCTGC-AACTTATATAAGATTTATACCATACAT-AAAGAAGAATTACGATTAT 509
Query 527 GGCATGCT-T-ATATTTCTCTTGACGTTCAATCTAATAACAGTATCGAGTTATAGAGTTG 584
|| || | | ||||||||||||||||||||||| ||||| || || || ||| |||| |
Sbjct 510 GG--TGTTGTGATATTTCTCTTGACGTTCAATCTTATAACGGTGTCAAGCTATCGAGTAG 567
Query 585 ATACCGTGATTAAA-ATTGCACATGAGAGATTCTATACTATAGCCATGGGT-GTTGGTAT 642
||| ||||| ||| || ||||| || |||||||| ||||||||||| ||| | || ||
Sbjct 568 ATAGTGTGAT-AAACATAGCACACGATAGATTCTACACTATAGCCATTGGTTGC-GGAAT 625
Query 643 TTGTCTGCTCATGAGCCTT-TTGGTTTTTCCTATTTGGTCTGGTGAGGACCTTCACAA-A 700
||||| ||||||||||| ||| |||||||||||||||||||||| || || ||||| |
Sbjct 626 CTGTCTTTTCATGAGCCTTCTTG-TTTTTCCTATTTGGTCTGGTGAAGATCTACACAAGA 684
Query 701 TCCACCGTCGCTAAGCTTCAAGGCCTCTC-CTATTCCATCGAAGCATGTGTGAATGAGTA 759
||||||| | ||| || |||||||| || | | | || ||||||||||||||||||||
Sbjct 685 -CCACCGTTGGTAAACTCCAAGGCCTTTCTCGCT-CTATTGAAGCATGTGTGAATGAGTA 742
Query 760 CTTTGAAGAGGAGGAGAAAGACGAAGAAACATCAGATTTGTCAGAAGACACGA-TCTAT- 817
|||||| ||| | |||||||| || ||||| |||| || |||||| || ||||
Sbjct 743 CTTTGAGGAGAAAGAGAAAGA--AA-AAACA---GATT---CAAAAGACA-GAATCTACG 792
Query 818 AACGGATAT-AAGACTGTTTTGGATTCCAAATCCGCCGATGAAGCACTTGCAATGTATGC 876
|| || ||| ||| ||||||||||||| |||||| | |||||| |||||||| | |||||
Sbjct 793 AAGGG-TATCAAG-CTGTTTTGGATTCTAAATCCACTGATGAAACACTTGCATTATATGC 850
Query 877 AAGTTGGGAGCCAAGACACACACGACATTGTCATAGATTTCCATGGAAACATTATGTTAA 936
|| ||||||||| |||||||||| || |||||||||||||||||| |||| ||||||||
Sbjct 851 AAATTGGGAGCCGAGACACACACTACGTTGTCATAGATTTCCATGTCAACAATATGTTAA 910
Query 937 AGTTGGATCTGTTCTTCGTCAGTTTGGTTACACTGTTGTTGCTCTTCATGGTTGCTTAAA 996
||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 911 AGTTGGAGCTGTTCTTCGTCAATTTGGTTACACTGTTGTTGCTCTTCACGGTTGCTTACA 970
Query 997 AACCGAAATTCAGACTCCGAGGCCTCTCCGTG-GACTCTTCAAGGATCCTTGCGTACGAC 1055
|||||| ||||| ||||| || || | || | | || ||||| |||||||| ||| ||
Sbjct 971 AACCGAGATTCAAACTCCAAGATCTGTTCGCGCG-CTTTTCAAAGATCCTTGTGTAAGAT 1029
Query 1056 TAGCTGGAGAAATCTGCAAGGTTTT-ATCGGAACTTGCCGCA-AGCAT-TAGAAACCGAC 1112
|||| |||||| | ||||| | ||| | ||||||| || | | ||||| | ||||| ||
Sbjct 1030 TAGCCGGAGAAGTATGCAAAGCTTTGA-CGGAACTCGCGG-ATAGCATCTC-AAACC-AC 1085
Query 1113 -GTCACTGTTCCCCGGAGATTCTCTCCGA-CAGTCTCCAAGTGGCA-TTACAAGATCTCA 1169
|||||||||| ||||| ||||| ||||| || |||||| |||||| || |||||||| |
Sbjct 1086 CGTCACTGTTCACCGGAAATTCTATCCGATCA-TCTCCACGTGGCACTT-CAAGATCTTA 1143
Query 1170 ACACAGCCATTAAATCACAACCTAAACTCTTCCTCGGCTCTA 1211
| | ||||| || || || |||||||||||||| || ||||
Sbjct 1144 ATTCCGCCATCAAGTCTCAGCCTAAACTCTTCCTTGGTTCTA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79875243765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5