BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46630.2
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948276 jgi|Araly1|948276|scaffold_800163.1 2337 0.0
> Ahg948276 jgi|Araly1|948276|scaffold_800163.1
Length=1475
Score = 2337 bits (1265), Expect = 0.0
Identities = 1341/1378 (97%), Gaps = 4/1378 (0%)
Strand=Plus/Plus
Query 7 TTTCAGTTGTTCAACTTCTTCGTCGTCGTCTTCTTCCTTTGCTCCGTCGTCGAGATCTCG 66
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TTTCAATTGTTCAACTTCTTCGTCGTCGTCTTCTTCCTTTGCTCCGTCGTTGAGATCTCG 60
Query 67 TCGAACCTCAAATCTCAAATCTCCTGTA-ACCAGATCGTCTAATTATCCGATCTGCGTTT 125
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 61 TCGAACCTCAAATCTCAAATCTCCTG-ACACCAGATCGTCTAATTATCCGATCTGCGTTT 119
Query 126 CGAA--TCTCAGATCGAAGATGCCGGTGGCTGCTTCCGCCATCTATTTTCTGAATCTCCG 183
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CGAATTTCTCAGATCGAAGATGCCGGTGGCTGCTTCCGCCATCTACTTTCTGAATCTCCG 179
Query 184 TGGCGATGTACTCATAAATCGCACCTACCGAGATGACGTCGGGGGAAACATGGTGGATGC 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TGGCGATGTACTCATAAATCGCACCTACCGTGATGACGTCGGGGGAAACATGGTGGATGC 239
Query 244 ATTTCGTACGCATATAATGCAGACGAAAGAGTTAGGGAATTGTCCTGTGCGTCAGATTGG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATTTCGTACGCATATAATGCAGACGAAAGAGTTAGGGAATTGTCCTGTGCGTCAGATTGG 299
Query 304 TGGCTGCTCCTTTGTTTATATGCGAATCAGCAATGTCTACATCGTCATTGTTGTCAGTAG 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TGGCTGCTCCTTTGTTTATATGCGAATCAGCAATGTCTACATTGTCATTGTTGTCAGTAG 359
Query 364 CAATGCTAATGTTGCTTGTGGATTCAAATTTGTTGTTGAGGCTGTAGCTTTGTTCAAATC 423
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 360 CAATGCTAATGTTGCTTGTGGATTCAAATTCGTTGTTGAGGCTGTTGCTTTGTTCAAATC 419
Query 424 ATACTTTGGTGGAGCTTTTGATGAAGACGCTATTAGAAATAACTTTGTTCTGATTTATGA 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 ATACTTTGGTGGAGCTTTTGATGAAGATGCTATTAGAAATAACTTTGTTCTGATTTATGA 479
Query 484 ATTGTTGGATGAGATTATGGACTTTGGCTATCCACAAAATCTCTCACCTGAAATTTTAAA 543
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 480 ATTGTTGGACGAGATTATGGACTTTGGCTATCCACAAAATCTCTCCCCTGAAATTTTGAA 539
Query 544 ACTTTATATCACTCAGGAAGGTGTACGGTCACCATTTTCATCGAAGCCAAAAGACAAACC 603
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 540 ACTTTATATCACTCAGGAAGGTGTACGGTCACCATTTTCATCGAAGCCAAAGGACAAGCC 599
Query 604 TGTTCCAAATGCAACATTACAAGTTACAGGTGCTGTTGGTTGGAGAAGAGAGGGCCTTGC 663
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TGTTCCAAATGCAACATTACAAGTTACGGGTGCTGTTGGTTGGAGAAGAGAGGGCCTTGC 659
Query 664 TTACAAAAAGAATGAGGTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTC 723
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTATAAAAAGAATGAGGTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTC 719
Query 724 TAAAGGCAATGTTCTTCGGTGTGATGTGACGGGGAAGGTTTTAATGAAATGTTTCCTTTC 783
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TAAAGGCAACGTTCTTCGGTGTGATGTGACGGGGAAAGTTTTAATGAAATGTTTCCTTTC 779
Query 784 GGGAATGCCTGATTTGAAGTTGGGGTTGAATGATAAAATTGGTCTTGAGAAGGAATCAGA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGGAATGCCTGATTTGAAGTTGGGGTTGAATGATAAAATTGGTCTTGAGAAGGAATCAGA 839
Query 844 AATGAAATCTCGCCCAGCTAAGAGTGGTAAAACCATTGAGCTTGATGATGTCACATTTCA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AATGAAATCTCGCCCAGCTAAGAGTGGTAAAACCATTGAGCTTGATGATGTCACATTTCA 899
Query 904 CCAGTGTGTGAACCTGACCAGATTCAACTCCGAGAAGACTGTTAGTTTTGTACCACCGGA 963
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 900 CCAGTGTGTGAACCTGACAAGATTCAATTCCGAGAAGACCGTTAGTTTTGTACCACCGGA 959
Query 964 TGGAGAGTTTGAACTGATGAAGTATCGAATAACAGAGGGTGTAAATCTGCCTTTCCGTGT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 TGGAGAGTTTGAACTGATGAAGTATCGAATAACAGAGGGTGTAAATCTGCCTTTCCGCGT 1019
Query 1024 ATTACCAACAATCAAAGAACTTGGTCGTACACGTATGGAAGTAAATGTCAAGGTCAAAAG 1083
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 ATTACCAACAATCAAAGAACTTGGTCGTACACGCATGGAAGTAAATGTCAAGGTCAAAAG 1079
Query 1084 TGTGTTTGGTGCTAAAATGTTTGCCCTTGGGGTCGTGGTTAAAATTCCAGTGCCAAAACA 1143
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 TGTGTTTGGTGCTAAAATGTTTGCCCTTGGGGTCGTAGTTAAAATTCCAGTGCCAAAACA 1139
Query 1144 AACAGCCAAGACCAATTTCCAAGTGACAACTGGTCGCGCTAAATACAATCCATCAATCGA 1203
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 AACAGCCAAGACCAATTTCCAAGTGACTACTGGTCGCGCTAAATACAATCCATCAATCGA 1199
Query 1204 TTGCTTGGTTTGGAAGATAAGAAAATTCCCAGGGCAAACAGAGTCCACGCTAAGTGCAGA 1263
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1200 TTGCTTGGTTTGGAAGATAAGAAAATTCCCAGGACAAACAGAGTCGACACTAAGTGCAGA 1259
Query 1264 AATTGAGTTGATCTCAACAATGGGAGAGAAGAAATCTTGGACAAGGCCACCGATCCAAAT 1323
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1260 AATTGAGTTGATCTCAACAATGGGAGAGAAGAAATCTTGGACAAGACCACCAATCCAAAT 1319
Query 1324 GGAATTTCAGGTGCCAATGTTCACAGCATCTGGTCTGCGAGTTCGTTTTCTCAAGGTA 1381
|||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 1320 GGAATTTCAGGTCCCAATGTTTACAGCATCTGGTTTGCGAGTTCGCTTTCTCAAGGTA 1377
Score = 169 bits (91), Expect = 8e-41
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1578 AGGTTTGGGAGAAGAGCGGTTACAACACGGTCGAGTGGGTTCGATACATAACGAAAGCGG 1637
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AGGTATGGGAGAAGAGTGGCTACAACACGGTCGAGTGGGTTCGATACATAACGAAAGCGG 1432
Query 1638 GATCTTACGAGATCAGATGCTGAACATTAAACACAGTTCAGGT 1680
||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1433 GATCTTACGAGATCAGATGCTGAACATAAAACACAGTTCAGGT 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69590877615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5