BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46640.1 Length=1637 Score E Sequences producing significant alignments: (Bits) Value Ahg494313 jgi|Araly1|494313|fgenesh2_kg.8__129__AT5G46640.1 1751 0.0 Ahg946418 jgi|Araly1|946418|scaffold_702647.1 377 1e-103 > Ahg494313 jgi|Araly1|494313|fgenesh2_kg.8__129__AT5G46640.1 Length=1461 Score = 1751 bits (948), Expect = 0.0 Identities = 1315/1479 (89%), Gaps = 78/1479 (5%) Strand=Plus/Plus Query 1 TCCTCGAGACTCTCTCTGTATGTGTGCGAGAAGCGAGAAGCgagagagagagagagagag 60 |||||||||||||||||||||||||| || || || | |||||||||||||||||| Sbjct 1 TCCTCGAGACTCTCTCTGTATGTGTGTGA-AA---AG-A--GAGAGAGAGAGAGAGAGAC 53 Query 61 TTGTTAG--CTCACACGCTTTCTCTATTTTCTCGGAATTCACAAAACAGAAAGTTTC-AT 117 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 54 TTGTTAGCTCTCACACGCTTTCTCTATTTTCTCGGAATTCACAAAACAGAAAGTTTCAAT 113 Query 118 CCTTTACGAGAA-TTAAGCCGAAAGAAACAATCTTTGAGTTTGATTTCTTCTTCCTTCCT 176 |||||||| || || ||||||||||||||||||||||||||| | ||||| ||| | Sbjct 114 -CTTTACGA-AATTTTTGCCGAAAGAAACAATCTTTGAGTTTGA--T-TTCTT-CTT-C- 165 Query 177 TCTCTCTCTCTGCTCTAATGGATTCCAGAGACATCCCACCGTCACATAACCAGCTTCAAC 236 || || || | ||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 166 -CT-TC-CT-T-CTCTAATGGATTCCAGAGATATCCCACCGTCACAGAACCAGCTTCAAC 220 Query 237 CACCACCGGGAATGTTAATGTCTCATTACCGTAACCCTAACGCCGCCGCTTCACCATTAA 296 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 221 CACCACCGGGAATGTTAATGTCTCATTACCGTAACCCTAACGCCGCCGCCGCTGCATTAA 280 Query 297 TGGTTCCCACTTCCACATCTCAACCGATTCAACA-C--CCTCGTCTTCCTTTTGGCAAT- 352 ||||||| ||||||||||||||| |||||||||| | | ||||||||||||||||||| Sbjct 281 TGGTTCCTACTTCCACATCTCAATCGATTCAACATCATCATCGTCTTCCTTTTGGCAATC 340 Query 353 -----CAACAACAATCTCAAACGTTTCATCAGCAGCAACAACAACAAATGGATCAGAAGA 407 |||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 341 AACAACAACAACAATCTCAAACGTTTCAT---CAG---CAACAACAAATGGATCAGAAGA 394 Query 408 CTCTTGAATCTCTTGGATTTGGTGATGGATCACCTTCTTCTCAACCGATGCGATTCGGGA 467 |||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||| Sbjct 395 CTCTTGAATCGCTTGGTTTTGGTGATGGATCGCCTTCTTCTCAAGCGATGCGATTCGGGA 454 Query 468 TC---GAT--G-ATCAGAATCAGCAACTGCAAGTGAAGAAGAAGCGAGGAAGGCCGAGAA 521 || ||| | |||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 455 TCGAGGATCAGAATCAGAATCAGCAACTTCAAGTGAAGAAGAAGCGAGGAAGGCCAAGAA 514 Query 522 AGTATACTCCTGATGGTAGCATTGCTTTAGGTTTAGCTCCTACGTCTCCTCTTCTCTCTG 581 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 515 AGTATACTCCTGATGGTAGCATTGCTTTAGGTTTAGCTCCGACGTCTCCTCTTCTCTCTG 574 Query 582 CAGCTTCTAATTCTTAC------GGTGAGGGTGGTGTTGGAGATAGTGGT------GGA- 628 ||||||||||||||||| ||||| ||||||||||||||||||||| ||| Sbjct 575 CAGCTTCTAATTCTTACGGTGGTGGTGATGGTGGTGTTGGAGATAGTGGTGGAGGAGGAG 634 Query 629 --AATGGAAACTCTGTTGATCCACCTGTTAAACGTAACAGAGGAAGGCCTCCTGGTTCTA 686 ||||||||||||| |||||| |||| |||||| ||||||||| | ||||||||||||| Sbjct 635 GTAATGGAAACTCTGCTGATCCTCCTGCTAAACGAAACAGAGGACGACCTCCTGGTTCTA 694 Query 687 GTAAGAAACAGCTTGATGCTTTAGGAGGAACTTCAGGAGTTGGGTTTACACCTCATGTCA 746 | |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct 695 GCAAGAAACAGCTTGATGCTTTAGGAGGAACTGCAGGAGTAGGGTTTACACCACATGTCA 754 Query 747 TTGAAGTGAACACAGGAGAGGACATAGCGTCAAAGGTGATGGCTTTTTCGGATCAAGGGT 806 |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 755 TTGAAGTGAAGACAGGAGAGGACATAGCGTCAAAGGTGATGGCTTTTTCGGAGCAAGGGC 814 Query 807 CAAGAACAATTTGTATTCTCTCTGCAAGTGGTGCAGTTTCTAGAGTGATGCTTCGTCAAG 866 || |||| |||||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct 815 CACGAACGATTTGTATTCTCTCTGCAAGTGGTGCGGTTGGTAGAGTGACACTTCGTCAAG 874 Query 867 CTTCTCATTCTAGTGGAATCGTTACTTATGAGGGACGATTTGAGATCATTACTCTCTCAG 926 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 875 CTTCTCATTCTAGTGGAATCGTTACTTATGAGGGACGATTCGAGATCATTACTCTCTCAG 934 Query 927 GCTCAGTCTT-GAATTATGAGGTAAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTG 985 |||| || || |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 935 GCTC-GTTTTTGAATTATGAGGTGAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTG 993 Query 986 GCTTTGGCTGGACCTGATGGC-GGCATCGTAGGTGGCAGTGTAGTTGGTAATCTAGTAGC 1044 ||||||||||||| |||||| || || ||||||| |||||||| ||| | |||||||| Sbjct 994 TCTTTGGCTGGACCCGATGGCCGG-ATTTTAGGTGGTAGTGTAGTCGGTCAGCTAGTAGC 1052 Query 1045 TGCAACACAAGTCCAGGTGATAGTGGGAAGCTTTGTTGCAGAAGCAAAGAAACCGAAACA 1104 |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 1053 TGCAACACAAGTCCAGGTCATAGTAGGAAGCTTTGTTGCGGAAGCAAAGAAACCGAAACC 1112 Query 1105 AAGTAGTGTTAACATTGCTCGGGGGCAGAATCCTGAACCGGCTTCAGCGCCGGCTAACAT 1164 |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1113 AAGTAGCATTAACAATGCTCGGGGCCAGAATCCTGAGCCGGCTTCAGCGCCGGCTAACAT 1172 Query 1165 GTTGAACTTTGGATCAGTCTCTCAAGGACCATCGAGCGAGTCATCAGAAGAGAATGAGAG 1224 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| Sbjct 1173 GTTGAACTTTGGATCAGTCTCTCAAGGGCCATCGAGTGAGTCATCAGAAGAGAATGGGAG 1232 Query 1225 CGGTTCTCCTGCAATGCACCGTGACAATAATAATGGGATATATGGAGCTcaacaacaaca 1284 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 1233 TGGTTCTCCTGCAATGCACCGTGACAATACTAATGGGATTTATGGAGCTCAACAACAACA 1292 Query 1285 acaacaacaacCTCTTCATCCTCATCAGATGCAAATGTACCAACATCTTTGGTCTAATCA 1344 || | | | | | |||||||||| ||||||||||||||| ||||||||| ||||||| Sbjct 1293 AC--C--C--C-T-T-CATCCTCATCCGATGCAAATGTACCACCATCTTTGGCCTAATCA 1343 Query 1345 TGGTCAATAAAATGAAGCG-GAAATT-AATTT-GTTTCCGTTTTGGTTACGGTTATGGTT 1401 |||||||||||||| | | | | || || ||||| |||||||||| ||||| || | Sbjct 1344 TGGTCAATAAAATGGA-CTTGCTCTAGAAATTCGTTTCGGTTTTGGTTATGGTTAGGGCT 1402 Query 1402 TGATTTCTTGTTGTTGTTTAGGCAAATCTTAAGAAGATT 1440 ||||||||| |||||||||| ||| |||| ||||||| Sbjct 1403 TGATTTCTTCTTGTTGTTTACACAAC-CTTAGGAAGATT 1440 > Ahg946418 jgi|Araly1|946418|scaffold_702647.1 Length=1257 Score = 377 bits (204), Expect = 1e-103 Identities = 598/780 (77%), Gaps = 60/780 (8%) Strand=Plus/Plus Query 373 TCATCAGCAGCAACAACAACAAATGGATCAGAAGACTCTTGAATCTCTTGGATTTGGTGA 432 ||||| |||| || ||||| || ||||||||||||||||||||||||||||||| | Sbjct 178 TCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACTCTTGAATCTCTTGGATTTG---A 234 Query 433 TGGATCACCTTCTTCTCAA-CCG-ATGCGATTCGGGA----TCGATGA--TCAGA-ATC- 482 |||||| ||||||||| ||| | ||| || | ||||||| | | ||| Sbjct 235 TGGATCGCCTTCTTCTGTTGCCGCAA-CGACTCAACAACAGTCGATGAGATTTGGGATCG 293 Query 483 AGCAACTGCAAGTGAAGAAGAAGCGAGGAAGGCCGAGAAAGTATACTCCTGATGGT---- 538 | || | || ||||||||||| ||||| || || || |||||| || |||||||| Sbjct 294 ACCATCAACAGGTGAAGAAGAAACGAGGTAGACCTAGGAAGTATGCTGCTGATGGTGGTG 353 Query 539 --AG---CATTGCT-TTAGGTTTAGCTCCTACGTCTCCTCTTCTCTCTGCAGCTTCTAAT 592 || ||||||| || ||||| |||||||| || ||||||| || ||||||||||| Sbjct 354 GTAGTAACATTGCTCTT-GGTTTGGCTCCTACTTCGCCTCTTC-CTA--CAGCTTCTAAT 409 Query 593 TCTTACGGTG----A---G--GGTGGTG-T--TGGAG---ATAGTGGTGGA---AATG-G 633 || ||||||| | | ||||||| | ||| | |||| || ||| |||| | Sbjct 410 TCATACGGTGGTGGAAATGAAGGTGGTGGTACTGGTGGTGATAGCGGCGGAGCTAATGCG 469 Query 634 AAACTCTGTT-GATCCACCTGTTAAACGTAACAGAGGAAGGCCTCCTGGTTCTAGTAAGA 692 || |||| | |||||||||| |||||| ||||||||| | |||||||| || |||||| Sbjct 470 AA-CTCT-TCCGATCCACCTGCTAAACGGAACAGAGGACGTCCTCCTGGCTCCGGTAAGA 527 Query 693 AACAGCTTGATGCTTTAGGAGGAACTTCAGGAGTTGGGTTTACACCTCATGTCATTGAAG 752 | |||||||| |||||||||||||| |||||||||||| ||||||||||||||||| | Sbjct 528 AGCAGCTTGACGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACACCTCATGTCATTGAGG 587 Query 753 TGAACACAGGAGAGGACATAGCG-TCAAAGGTGATGGCTTTTTCGGATCAAGGGTCAAGA 811 | || ||||||||||||||||| | || ||| ||||| ||| || | |||||| || | Sbjct 588 TTAAAACAGGAGAGGACATAGCTATGAA-GGTAATGGCGTTTACGAACCAAGGGCCACGC 646 Query 812 ACAATTTGTATTCTCTCTGCAAGTGGTGCAGTTTCTAGA-GTGATGCTTCGTCAAGCTTC 870 |||| ||||||||||| || | || || || ||| | |||| |||||||||||| | Sbjct 647 GCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTA-ATGTGAAACTTCGTCAAGCTAC 705 Query 871 TCATTC-TAGTGGAATCGTTACTTATGAGGGACGATTTGAGATCATTACTCTCTCAGGCT 929 || || ||||||||| |||| |||||||| |||||||| |||||| |||| ||||| | Sbjct 706 -CAATCCTAGTGGAATTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCTGTCAGGTT 764 Query 930 CAGTCTTGAATTATGAG-GTAAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTGGCT 988 | | ||||||| |||| |||| |||| | | || || |||||||||||||||| | Sbjct 765 CTTTTTTGAATTCTGAGAGTAA-TGGTACTGTGACCAAAACTGGTAACTTGAGTGTGTCG 823 Query 989 TTGGCTGGACCTGATGGCGGCATCGTAGGTGGCAGTGTAGTTGGTAAT-CTAGTAGCTGC 1047 ||||||||| |||||||| || || ||||| ||||| | ||| ||| |||||||||| Sbjct 824 CTGGCTGGACAAGATGGCGGGATTGTGGGTGGAAGTGTTGCTGG-AATGCTAGTAGCTGG 882 Query 1048 AACACAAGTCCAGGTGATAGTGGGAAGCTTTGTTGCAGAAGCAAAGAAACCGAAACAAAG 1107 | ||||||||||||| || |||||||||||||| |||| | || ||| | ||||||||| Sbjct 883 ATCACAAGTCCAGGTCATTGTGGGAAGCTTTGTACCAGATGGAAGGAAGCAGAAACAAAG 942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61363384695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5