BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46640.1
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494313 jgi|Araly1|494313|fgenesh2_kg.8__129__AT5G46640.1 1751 0.0
Ahg946418 jgi|Araly1|946418|scaffold_702647.1 377 1e-103
> Ahg494313 jgi|Araly1|494313|fgenesh2_kg.8__129__AT5G46640.1
Length=1461
Score = 1751 bits (948), Expect = 0.0
Identities = 1315/1479 (89%), Gaps = 78/1479 (5%)
Strand=Plus/Plus
Query 1 TCCTCGAGACTCTCTCTGTATGTGTGCGAGAAGCGAGAAGCgagagagagagagagagag 60
|||||||||||||||||||||||||| || || || | ||||||||||||||||||
Sbjct 1 TCCTCGAGACTCTCTCTGTATGTGTGTGA-AA---AG-A--GAGAGAGAGAGAGAGAGAC 53
Query 61 TTGTTAG--CTCACACGCTTTCTCTATTTTCTCGGAATTCACAAAACAGAAAGTTTC-AT 117
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 54 TTGTTAGCTCTCACACGCTTTCTCTATTTTCTCGGAATTCACAAAACAGAAAGTTTCAAT 113
Query 118 CCTTTACGAGAA-TTAAGCCGAAAGAAACAATCTTTGAGTTTGATTTCTTCTTCCTTCCT 176
|||||||| || || ||||||||||||||||||||||||||| | ||||| ||| |
Sbjct 114 -CTTTACGA-AATTTTTGCCGAAAGAAACAATCTTTGAGTTTGA--T-TTCTT-CTT-C- 165
Query 177 TCTCTCTCTCTGCTCTAATGGATTCCAGAGACATCCCACCGTCACATAACCAGCTTCAAC 236
|| || || | ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 166 -CT-TC-CT-T-CTCTAATGGATTCCAGAGATATCCCACCGTCACAGAACCAGCTTCAAC 220
Query 237 CACCACCGGGAATGTTAATGTCTCATTACCGTAACCCTAACGCCGCCGCTTCACCATTAA 296
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 221 CACCACCGGGAATGTTAATGTCTCATTACCGTAACCCTAACGCCGCCGCCGCTGCATTAA 280
Query 297 TGGTTCCCACTTCCACATCTCAACCGATTCAACA-C--CCTCGTCTTCCTTTTGGCAAT- 352
||||||| ||||||||||||||| |||||||||| | | |||||||||||||||||||
Sbjct 281 TGGTTCCTACTTCCACATCTCAATCGATTCAACATCATCATCGTCTTCCTTTTGGCAATC 340
Query 353 -----CAACAACAATCTCAAACGTTTCATCAGCAGCAACAACAACAAATGGATCAGAAGA 407
|||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 341 AACAACAACAACAATCTCAAACGTTTCAT---CAG---CAACAACAAATGGATCAGAAGA 394
Query 408 CTCTTGAATCTCTTGGATTTGGTGATGGATCACCTTCTTCTCAACCGATGCGATTCGGGA 467
|||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||
Sbjct 395 CTCTTGAATCGCTTGGTTTTGGTGATGGATCGCCTTCTTCTCAAGCGATGCGATTCGGGA 454
Query 468 TC---GAT--G-ATCAGAATCAGCAACTGCAAGTGAAGAAGAAGCGAGGAAGGCCGAGAA 521
|| ||| | |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 455 TCGAGGATCAGAATCAGAATCAGCAACTTCAAGTGAAGAAGAAGCGAGGAAGGCCAAGAA 514
Query 522 AGTATACTCCTGATGGTAGCATTGCTTTAGGTTTAGCTCCTACGTCTCCTCTTCTCTCTG 581
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 515 AGTATACTCCTGATGGTAGCATTGCTTTAGGTTTAGCTCCGACGTCTCCTCTTCTCTCTG 574
Query 582 CAGCTTCTAATTCTTAC------GGTGAGGGTGGTGTTGGAGATAGTGGT------GGA- 628
||||||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 575 CAGCTTCTAATTCTTACGGTGGTGGTGATGGTGGTGTTGGAGATAGTGGTGGAGGAGGAG 634
Query 629 --AATGGAAACTCTGTTGATCCACCTGTTAAACGTAACAGAGGAAGGCCTCCTGGTTCTA 686
||||||||||||| |||||| |||| |||||| ||||||||| | |||||||||||||
Sbjct 635 GTAATGGAAACTCTGCTGATCCTCCTGCTAAACGAAACAGAGGACGACCTCCTGGTTCTA 694
Query 687 GTAAGAAACAGCTTGATGCTTTAGGAGGAACTTCAGGAGTTGGGTTTACACCTCATGTCA 746
| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 695 GCAAGAAACAGCTTGATGCTTTAGGAGGAACTGCAGGAGTAGGGTTTACACCACATGTCA 754
Query 747 TTGAAGTGAACACAGGAGAGGACATAGCGTCAAAGGTGATGGCTTTTTCGGATCAAGGGT 806
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 755 TTGAAGTGAAGACAGGAGAGGACATAGCGTCAAAGGTGATGGCTTTTTCGGAGCAAGGGC 814
Query 807 CAAGAACAATTTGTATTCTCTCTGCAAGTGGTGCAGTTTCTAGAGTGATGCTTCGTCAAG 866
|| |||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 815 CACGAACGATTTGTATTCTCTCTGCAAGTGGTGCGGTTGGTAGAGTGACACTTCGTCAAG 874
Query 867 CTTCTCATTCTAGTGGAATCGTTACTTATGAGGGACGATTTGAGATCATTACTCTCTCAG 926
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 875 CTTCTCATTCTAGTGGAATCGTTACTTATGAGGGACGATTCGAGATCATTACTCTCTCAG 934
Query 927 GCTCAGTCTT-GAATTATGAGGTAAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTG 985
|||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 935 GCTC-GTTTTTGAATTATGAGGTGAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTG 993
Query 986 GCTTTGGCTGGACCTGATGGC-GGCATCGTAGGTGGCAGTGTAGTTGGTAATCTAGTAGC 1044
||||||||||||| |||||| || || ||||||| |||||||| ||| | ||||||||
Sbjct 994 TCTTTGGCTGGACCCGATGGCCGG-ATTTTAGGTGGTAGTGTAGTCGGTCAGCTAGTAGC 1052
Query 1045 TGCAACACAAGTCCAGGTGATAGTGGGAAGCTTTGTTGCAGAAGCAAAGAAACCGAAACA 1104
|||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1053 TGCAACACAAGTCCAGGTCATAGTAGGAAGCTTTGTTGCGGAAGCAAAGAAACCGAAACC 1112
Query 1105 AAGTAGTGTTAACATTGCTCGGGGGCAGAATCCTGAACCGGCTTCAGCGCCGGCTAACAT 1164
|||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1113 AAGTAGCATTAACAATGCTCGGGGCCAGAATCCTGAGCCGGCTTCAGCGCCGGCTAACAT 1172
Query 1165 GTTGAACTTTGGATCAGTCTCTCAAGGACCATCGAGCGAGTCATCAGAAGAGAATGAGAG 1224
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 1173 GTTGAACTTTGGATCAGTCTCTCAAGGGCCATCGAGTGAGTCATCAGAAGAGAATGGGAG 1232
Query 1225 CGGTTCTCCTGCAATGCACCGTGACAATAATAATGGGATATATGGAGCTcaacaacaaca 1284
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1233 TGGTTCTCCTGCAATGCACCGTGACAATACTAATGGGATTTATGGAGCTCAACAACAACA 1292
Query 1285 acaacaacaacCTCTTCATCCTCATCAGATGCAAATGTACCAACATCTTTGGTCTAATCA 1344
|| | | | | | |||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 1293 AC--C--C--C-T-T-CATCCTCATCCGATGCAAATGTACCACCATCTTTGGCCTAATCA 1343
Query 1345 TGGTCAATAAAATGAAGCG-GAAATT-AATTT-GTTTCCGTTTTGGTTACGGTTATGGTT 1401
|||||||||||||| | | | | || || ||||| |||||||||| ||||| || |
Sbjct 1344 TGGTCAATAAAATGGA-CTTGCTCTAGAAATTCGTTTCGGTTTTGGTTATGGTTAGGGCT 1402
Query 1402 TGATTTCTTGTTGTTGTTTAGGCAAATCTTAAGAAGATT 1440
||||||||| |||||||||| ||| |||| |||||||
Sbjct 1403 TGATTTCTTCTTGTTGTTTACACAAC-CTTAGGAAGATT 1440
> Ahg946418 jgi|Araly1|946418|scaffold_702647.1
Length=1257
Score = 377 bits (204), Expect = 1e-103
Identities = 598/780 (77%), Gaps = 60/780 (8%)
Strand=Plus/Plus
Query 373 TCATCAGCAGCAACAACAACAAATGGATCAGAAGACTCTTGAATCTCTTGGATTTGGTGA 432
||||| |||| || ||||| || ||||||||||||||||||||||||||||||| |
Sbjct 178 TCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACTCTTGAATCTCTTGGATTTG---A 234
Query 433 TGGATCACCTTCTTCTCAA-CCG-ATGCGATTCGGGA----TCGATGA--TCAGA-ATC- 482
|||||| ||||||||| ||| | ||| || | ||||||| | | |||
Sbjct 235 TGGATCGCCTTCTTCTGTTGCCGCAA-CGACTCAACAACAGTCGATGAGATTTGGGATCG 293
Query 483 AGCAACTGCAAGTGAAGAAGAAGCGAGGAAGGCCGAGAAAGTATACTCCTGATGGT---- 538
| || | || ||||||||||| ||||| || || || |||||| || ||||||||
Sbjct 294 ACCATCAACAGGTGAAGAAGAAACGAGGTAGACCTAGGAAGTATGCTGCTGATGGTGGTG 353
Query 539 --AG---CATTGCT-TTAGGTTTAGCTCCTACGTCTCCTCTTCTCTCTGCAGCTTCTAAT 592
|| ||||||| || ||||| |||||||| || ||||||| || |||||||||||
Sbjct 354 GTAGTAACATTGCTCTT-GGTTTGGCTCCTACTTCGCCTCTTC-CTA--CAGCTTCTAAT 409
Query 593 TCTTACGGTG----A---G--GGTGGTG-T--TGGAG---ATAGTGGTGGA---AATG-G 633
|| ||||||| | | ||||||| | ||| | |||| || ||| |||| |
Sbjct 410 TCATACGGTGGTGGAAATGAAGGTGGTGGTACTGGTGGTGATAGCGGCGGAGCTAATGCG 469
Query 634 AAACTCTGTT-GATCCACCTGTTAAACGTAACAGAGGAAGGCCTCCTGGTTCTAGTAAGA 692
|| |||| | |||||||||| |||||| ||||||||| | |||||||| || ||||||
Sbjct 470 AA-CTCT-TCCGATCCACCTGCTAAACGGAACAGAGGACGTCCTCCTGGCTCCGGTAAGA 527
Query 693 AACAGCTTGATGCTTTAGGAGGAACTTCAGGAGTTGGGTTTACACCTCATGTCATTGAAG 752
| |||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 528 AGCAGCTTGACGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACACCTCATGTCATTGAGG 587
Query 753 TGAACACAGGAGAGGACATAGCG-TCAAAGGTGATGGCTTTTTCGGATCAAGGGTCAAGA 811
| || ||||||||||||||||| | || ||| ||||| ||| || | |||||| || |
Sbjct 588 TTAAAACAGGAGAGGACATAGCTATGAA-GGTAATGGCGTTTACGAACCAAGGGCCACGC 646
Query 812 ACAATTTGTATTCTCTCTGCAAGTGGTGCAGTTTCTAGA-GTGATGCTTCGTCAAGCTTC 870
|||| ||||||||||| || | || || || ||| | |||| |||||||||||| |
Sbjct 647 GCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTA-ATGTGAAACTTCGTCAAGCTAC 705
Query 871 TCATTC-TAGTGGAATCGTTACTTATGAGGGACGATTTGAGATCATTACTCTCTCAGGCT 929
|| || ||||||||| |||| |||||||| |||||||| |||||| |||| ||||| |
Sbjct 706 -CAATCCTAGTGGAATTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCTGTCAGGTT 764
Query 930 CAGTCTTGAATTATGAG-GTAAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTGGCT 988
| | ||||||| |||| |||| |||| | | || || |||||||||||||||| |
Sbjct 765 CTTTTTTGAATTCTGAGAGTAA-TGGTACTGTGACCAAAACTGGTAACTTGAGTGTGTCG 823
Query 989 TTGGCTGGACCTGATGGCGGCATCGTAGGTGGCAGTGTAGTTGGTAAT-CTAGTAGCTGC 1047
||||||||| |||||||| || || ||||| ||||| | ||| ||| ||||||||||
Sbjct 824 CTGGCTGGACAAGATGGCGGGATTGTGGGTGGAAGTGTTGCTGG-AATGCTAGTAGCTGG 882
Query 1048 AACACAAGTCCAGGTGATAGTGGGAAGCTTTGTTGCAGAAGCAAAGAAACCGAAACAAAG 1107
| ||||||||||||| || |||||||||||||| |||| | || ||| | |||||||||
Sbjct 883 ATCACAAGTCCAGGTCATTGTGGGAAGCTTTGTACCAGATGGAAGGAAGCAGAAACAAAG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61363384695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5