BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46650.1
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948274 jgi|Araly1|948274|scaffold_800161.1 1360 0.0
> Ahg948274 jgi|Araly1|948274|scaffold_800161.1
Length=914
Score = 1360 bits (736), Expect = 0.0
Identities = 831/876 (95%), Gaps = 9/876 (1%)
Strand=Plus/Plus
Query 1 ATGCCGATAGCGAAACCGATCAACCAAAACACTACTGTTCCATATCCACCACAACATTAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGCCGATAGCGAAACCGATCAACCAAAACACTACTGTTCCATATCCACCACAACATTAC 81
Query 61 AGTAAACCGCCTCTAGTCATAATCCTAACCGTGATCCTCCTCGTCGTCTTT-TTCATCGG 119
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 82 AGTAAACCGCCTCTAGTCATAATCCTAACCGTGATCCTCCTCGTCGT-TTTCTTCATCGG 140
Query 120 TTT-TTTCGCTATCTATTTCTGTAAATGTTTCTACCACACTCTCACCGAAGCTTGGAACC 178
||| ||| ||| | |||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 141 TTTCTTT-GCTCTATATTTCTGCAAATACTTCTACCACACTCTCACCGAAGCTTGGAATC 199
Query 179 ACCATTACCACAACGGATTGCCCGAAAATCAAATCCAAGCACAACAAGAACCCGTTCAAC 238
||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct 200 ACCATTACCGCAACGGATTACCCGAAAATCAAGTCCAAGCACAACAAGATCCCGTTCAAC 259
Query 239 CACCGGTTAACCCTGGTCTAGAGCCACACATCATCCAATCCTACCCTTTGTTTCCATTCT 298
||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||
Sbjct 260 CACCGGTTAACCCTGGTCTCGAGCCACATATCATCCAATCATTCCCTTTGTTTCCATTCT 319
Query 299 CATCCGTCAAAGATCTCAGGGAAGACAAATACGGTCTCGAATGCGCGATTTGTCTACTTG 358
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 320 CATCCGTCAAAGACCTCAGGGAAGACAAATACGGTCTCGAATGCGCCATTTGTCTTCTTG 379
Query 359 AATTCGAAGAAGAACACATCCTCCTACGACTCTTGACAACTTGTTACCATGTTTTTCATC 418
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 380 AATTCGAAGAAGAACACATCTTCCTACGACTCTTGACAACTTGTTACCATGTTTTCCATC 439
Query 419 AAGAATGCATCGATCAATGGCTTGAATCTAACAAAACATGCCCTGTATGTCGTCGGAATT 478
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 440 AAGAATGCATCGATCAATGGCTTGAGTCTAACAAAACATGCCCTGTATGTCGTCGGAATC 499
Query 479 TAGATCCAAACGCGCCAGAAAACATCAAAGAGTTGATCATCGAAGTCATACAAGAAAACG 538
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TAGATCCAAACGCGCCTGAAAACATCAAAGAGTTGATCATCGAAGTCATACAAGAAAACG 559
Query 539 CACATGAAAATCGCGATCAGGAA-CAAACGTCAACATCAAACGAGGTTATGTTGTCGAGA 597
|||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 560 CACACGAAAATCGCGATCAA-AATCAAACGTCAACATCAAACGAGGTTTTGTTGTCGAGA 618
Query 598 CAAAGTAGTGGTAACAACGAGAGAAAGATTGAGACGTTACCGGATAAATTCTCGAGATCG 657
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 619 CAAAGTAGTAGTAACAACGAGAGAAAGATTGAGACGTTACCGGATAAGTTCTCGAGATCA 678
Query 658 AAAACGACAGGTCATTCAATTGTGAGGAATAAACCGGAGGAAGAAGATCGGTATACTTTG 717
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 679 AAAACGACGGGACATTCAATTGTGAGGAATAAACCGGAGGAAGAAGATAGGTATACTTTG 738
Query 718 AGGTTACCGGATCATGTTAAGATTAAGGTTACGAGAAGACACAACAATAATCAAACAGAG 777
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 739 AGGTTACCGGATCATGTTAAGATTAAGGTTACGAGAAGACATAACAATAATCAAACAGAG 798
Query 778 AGTTGTATTTCATTTGGTGAGCTTGTTAGAAACAGAGAAGGCCGGTTTGGTGAAGTTTCT 837
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 799 AGTTGTATTTCATTTGGTGAGCTTATGAGAAACAGAGGAGGCCGGTTTGGTGAAGTTTCT 858
Query 838 GGTCAATCACTTGTACCGGAATCA---GGAAGTTAA 870
|||||||| ||||||||||||||| |||||||||
Sbjct 859 GGTCAATCTCTTGTACCGGAATCATCAGGAAGTTAA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32213864865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5