BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46660.1 Length=918 Score E Sequences producing significant alignments: (Bits) Value Ahg495662 jgi|Araly1|495662|fgenesh2_kg.8__1478__AT5G46660.1 278 6e-74 > Ahg495662 jgi|Araly1|495662|fgenesh2_kg.8__1478__AT5G46660.1 Length=296 Score = 278 bits (150), Expect = 6e-74 Identities = 208/235 (89%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 193 ACGGAGGAGGATAAGGAGAAGTTTCGGCCATTTAATTCTTCTCCTCATTTCCCAAACACA 252 |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct 234 ACGGAGGAGGATAAGGAGAAGTTTCGGCCATTTAATTCTTCTTCTCATTTCCCCAGCACA 175 Query 253 AGAAGCGGTGATCAGCAAGGCGGATCTTTGCTTGATTGCGACCAACATGGTATATGTAAG 312 |||||| ||||||| |||||| ||||||||||||||||||||||||||| ||| |||||| Sbjct 174 AGAAGCCGTGATCAACAAGGCCGATCTTTGCTTGATTGCGACCAACATGATATCTGTAAG 115 Query 313 CTCCCTGTAGTCCCTCTCTTTTGGTGCAACAATAAAA--G-TC--CTA-GTTCTGACGAA 366 ||||||||||||||||| |||||||||||||||||| | | || || || || || Sbjct 114 CTCCCTGTAGTCCCTCTTTTTTGGTGCAACAATAAAGCTGATGAACTTCGTCCTTACCAA 55 Query 367 TTC-ATGTGCGGTGCATGCGAAAAAATAGTGCTCAGCACAAACTATTTTGCATGT 420 ||| || |||||||||||||| |||| || || |||||||||||||||||||||| Sbjct 54 TTCCAT-TGCGGTGCATGCGACAAAACAGAGCCCAGCACAAACTATTTTGCATGT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34043764881 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5