BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46660.1

Length=918
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495662 jgi|Araly1|495662|fgenesh2_kg.8__1478__AT5G46660.1         278    6e-74


> Ahg495662 jgi|Araly1|495662|fgenesh2_kg.8__1478__AT5G46660.1
Length=296

 Score =  278 bits (150),  Expect = 6e-74
 Identities = 208/235 (89%), Gaps = 8/235 (3%)
 Strand=Plus/Minus

Query  193  ACGGAGGAGGATAAGGAGAAGTTTCGGCCATTTAATTCTTCTCCTCATTTCCCAAACACA  252
            |||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct  234  ACGGAGGAGGATAAGGAGAAGTTTCGGCCATTTAATTCTTCTTCTCATTTCCCCAGCACA  175

Query  253  AGAAGCGGTGATCAGCAAGGCGGATCTTTGCTTGATTGCGACCAACATGGTATATGTAAG  312
            |||||| ||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct  174  AGAAGCCGTGATCAACAAGGCCGATCTTTGCTTGATTGCGACCAACATGATATCTGTAAG  115

Query  313  CTCCCTGTAGTCCCTCTCTTTTGGTGCAACAATAAAA--G-TC--CTA-GTTCTGACGAA  366
            ||||||||||||||||| ||||||||||||||||||   | |   ||  || || || ||
Sbjct  114  CTCCCTGTAGTCCCTCTTTTTTGGTGCAACAATAAAGCTGATGAACTTCGTCCTTACCAA  55

Query  367  TTC-ATGTGCGGTGCATGCGAAAAAATAGTGCTCAGCACAAACTATTTTGCATGT  420
            ||| || |||||||||||||| |||| || || ||||||||||||||||||||||
Sbjct  54   TTCCAT-TGCGGTGCATGCGACAAAACAGAGCCCAGCACAAACTATTTTGCATGT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34043764881


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5