BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46680.1 Length=1634 Score E Sequences producing significant alignments: (Bits) Value Ahg494311 jgi|Araly1|494311|fgenesh2_kg.8__127__AT5G46680.1 2172 0.0 > Ahg494311 jgi|Araly1|494311|fgenesh2_kg.8__127__AT5G46680.1 Length=1472 Score = 2172 bits (1176), Expect = 0.0 Identities = 1338/1418 (94%), Gaps = 4/1418 (0%) Strand=Plus/Plus Query 141 TCTCGAAGAATGGTTCGTGGATTGATGAAATTCCCAGGAATCTCAACGAAGTTATTAAAC 200 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 21 TCTCGGAGAATGGTTCGTGGATTGATGAAATTCCCAGGAATCTCAACGAAGTTATTGAAC 80 Query 201 ATAAGCGTTAATTCTCTCTGCAAATTTCGAAACTTGGAG-AGAGCAGAAACATTACTCAT 259 ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 81 ATAAGCGTTGATTCTCTCTGCAAATTTCGAAACTTGGAGAAG-GCAGAAACATTACTCAT 139 Query 260 AGACGGAATCAGATTAGGTGTTCTTCCTGATGTGATCACTTACAACACTCTAATCAAAGG 319 ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 140 AGACGGAATCAGATTAGGTGTTCTTCCAGATGTTATCACTTACAACACTTTAATCAAAGG 199 Query 320 GTACACTCGTTTCATTGGAATCGACGAAGCTTATGCTGTAACACGTCGTATGAGAGAAGC 379 ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 200 TTACTCTCGTTTCATTGGAATCGACGAAGCTTATGCTGTTACACGTCGTATGAGAGAAGC 259 Query 380 TGGGATCGAACCAGATGTTACTACTTACAATTCATTGATCTCAGGAGCTGCTAAAAACTT 439 ||| |||||||| |||||| ||||||| |||||||||||||| ||||||||||||||||| Sbjct 260 TGGTATCGAACCTGATGTTGCTACTTATAATTCATTGATCTCTGGAGCTGCTAAAAACTT 319 Query 440 GATGTTGAATCGTGTACTCCAACTGTTCGACGAAATGCTTCACTCAGGTTTGTCTCCTGA 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 GATGTTGAATCGTGTACTCCAACTGTTCGACGAAATGCTTCACTCAGGTTTGTCTCCTGA 379 Query 500 TATGTGGAGTTATAATACTTTAATGTCTTGTTACTTCAAATTAGGGAGACATGGAGAAGC 559 |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| Sbjct 380 TATGTGGAGTTATAATACTTTAATGTCTTGTTACTTTAGATTAGGGAAACATGGAGAAGC 439 Query 560 GTTTAAGATTCTTCATGAGGATATTCATTTAGCTGGGTTGGTTCCTGGGATTGATACTTA 619 |||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||| || Sbjct 440 GTTTCGGATTCTTCATGAGGATATTCGTTTAGCTGGGTTGGTTCCGGGGATCGATACGTA 499 Query 620 TAACATTCTGCTTGATGCGCTTTGTAAAAGCGGTCATACGGATAATGCGATTGAGTTGTT 679 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 TAATATTCTGCTTGATGCGCTTTGTAAAAGCGGTCATACGGATAATGCGATTGAGTTGTT 559 Query 680 TAAGCATCTGAAGAGTCGGGTTAAACCCGAGCTTATGACGTATAATATTCTCATCAATGG 739 ||||||| ||||||||||||||||||| ||||||||||||||||| ||||| || ||||| Sbjct 560 TAAGCATTTGAAGAGTCGGGTTAAACCGGAGCTTATGACGTATAACATTCTTATTAATGG 619 Query 740 TCTTTGTAAATCGAGAAGGGTTGGTTCTGTGGATTGGATGATGAGAGAGCTTAAGAAATC 799 |||||||||||||||||||||||| |||||| |||||||| |||||||||||| |||| | Sbjct 620 TCTTTGTAAATCGAGAAGGGTTGGGTCTGTGAATTGGATGCTGAGAGAGCTTAGGAAAGC 679 Query 800 GGGCTATACTCCGAATGCGGTTACGTATACAACGATGCTTAAAATGTATTTTAAGACTAA 859 ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 680 GGGTTATACTCCGAATGCTGTTACGTATACAACGGTGCTTAAAATGTATTTTAAGACTAA 739 Query 860 GAGGATTGAGAAAGGTCTTCAGTTGTTTTTGAAGATGAAGAAAGAAGGGTATACGTTTGA 919 ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| Sbjct 740 GAGGATTGAGAAAGGGCTTGAGCTGTTTTTGAAGATGAAGAAAGAAGGGTATACGTTTGA 799 Query 920 CGGGTTTGCGAATTGTGCGGTTGTTAGTGCGTTGATTAAAACCGGAAGAGCAGAGGAGGC 979 ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 800 CGGGTATGCGAATTGTGCGGTTGTTAGTGCTTTGATTAAAACCGGAAGAGGAGAGGAGGC 859 Query 980 GTATGAGTGTATGCACGAGCTTGTGAGAAGTGGTACAAGGAGTCAAGACATTGTTTCGTA 1039 ||| | ||||||| ||||||| |||||||| |||||| |||||||||||||||||||||| Sbjct 860 GTACGGGTGTATGAACGAGCTGGTGAGAAGCGGTACACGGAGTCAAGACATTGTTTCGTA 919 Query 1040 CAATACATTGTTGAATTTGTATTTTAAAGATGGGAACTTGGATGCAGTAGATGATCTATT 1099 ||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 920 CAACACGTTGTTGAATATGTATTTTAAAGATGGGAATTTGGATGCAGTAGATGATCTATT 979 Query 1100 GGAGGAGATTGAGATGAAGGGGTTGAAACCTGATGACTATACTCATACGATTATAGTCAA 1159 |||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||| Sbjct 980 GGAGGAGATTGAGATGAAAGGATTGAAACCTGATGACTACACGCATACGATTATAGTCAA 1039 Query 1160 TGGTTTGTTAAATATAGG-CAATACGGGAGGAGCCGAGAAGCATTTGGCATGTATCGGAG 1218 |||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct 1040 TGGTTTGTTAAAAATAGGTCA-TACGGGAGGAGCCGAGAAGCATTTGGCACGTATCGGAG 1098 Query 1219 AGATGGGGATGCAGCCGAGTGTTGTCACTTGTAACTGTTTGATTGATGGGTTGTGCAAAG 1278 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1099 AGATGGGGATGCAGCCGAGTGTCGTCACTTGTAACTGTTTGATTGATGGGTTGTGCAAAG 1158 Query 1279 CAGGTCATGTAGATCGTGCAATGAGGTTGTTTGCGTCAATGGAAGTTAGAGATGAGTTCA 1338 | || || ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1159 CGGGCCACGTAGATCGTGCGATGAGGTTGTTTGCGTCAATGGAAGTTAGAGATGAGTTCA 1218 Query 1339 CTTACACTTCTGTTGTGCATAATCTATGCAAAGACGGACGGCTTGTTTGTGCTTCGAAGC 1398 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1219 CTTACACTTCTGTTGTGCATAATCTATGCAAAGACGGGCGGCTTGTTTGTGCTTCGAAGC 1278 Query 1399 TGCTCTTGTCGTGTTACAATAAAGGAATGAAGATTCCGTCATCGGCTAGACGAGCAGTGT 1458 | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1279 TACTCTTGTCGTGTTACAACAAAGGAATGAAGATTCCGTCATCGGCTAGACGAGCTGTGT 1338 Query 1459 TGTCCGGCATACGGGAGACGGTATCTTACCAAGCAGCAAGGAAGACACATATCAAAATCA 1518 ||||||| || |||||||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 1339 TGTCCGGTTTAAGGGAGACGGTATCTCACCAGGCAGCAAGGAAGACACATTTCAAAATCA 1398 Query 1519 AAGCAGCTATTGAGTGTAATACACTAATGTACCCTTAA 1556 |||||||||||||||||||| |||||||||| |||||| Sbjct 1399 AAGCAGCTATTGAGTGTAATGCACTAATGTATCCTTAA 1436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61249113960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5