BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46680.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494311 jgi|Araly1|494311|fgenesh2_kg.8__127__AT5G46680.1 2172 0.0
> Ahg494311 jgi|Araly1|494311|fgenesh2_kg.8__127__AT5G46680.1
Length=1472
Score = 2172 bits (1176), Expect = 0.0
Identities = 1338/1418 (94%), Gaps = 4/1418 (0%)
Strand=Plus/Plus
Query 141 TCTCGAAGAATGGTTCGTGGATTGATGAAATTCCCAGGAATCTCAACGAAGTTATTAAAC 200
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 21 TCTCGGAGAATGGTTCGTGGATTGATGAAATTCCCAGGAATCTCAACGAAGTTATTGAAC 80
Query 201 ATAAGCGTTAATTCTCTCTGCAAATTTCGAAACTTGGAG-AGAGCAGAAACATTACTCAT 259
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 81 ATAAGCGTTGATTCTCTCTGCAAATTTCGAAACTTGGAGAAG-GCAGAAACATTACTCAT 139
Query 260 AGACGGAATCAGATTAGGTGTTCTTCCTGATGTGATCACTTACAACACTCTAATCAAAGG 319
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 140 AGACGGAATCAGATTAGGTGTTCTTCCAGATGTTATCACTTACAACACTTTAATCAAAGG 199
Query 320 GTACACTCGTTTCATTGGAATCGACGAAGCTTATGCTGTAACACGTCGTATGAGAGAAGC 379
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 200 TTACTCTCGTTTCATTGGAATCGACGAAGCTTATGCTGTTACACGTCGTATGAGAGAAGC 259
Query 380 TGGGATCGAACCAGATGTTACTACTTACAATTCATTGATCTCAGGAGCTGCTAAAAACTT 439
||| |||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 260 TGGTATCGAACCTGATGTTGCTACTTATAATTCATTGATCTCTGGAGCTGCTAAAAACTT 319
Query 440 GATGTTGAATCGTGTACTCCAACTGTTCGACGAAATGCTTCACTCAGGTTTGTCTCCTGA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GATGTTGAATCGTGTACTCCAACTGTTCGACGAAATGCTTCACTCAGGTTTGTCTCCTGA 379
Query 500 TATGTGGAGTTATAATACTTTAATGTCTTGTTACTTCAAATTAGGGAGACATGGAGAAGC 559
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 380 TATGTGGAGTTATAATACTTTAATGTCTTGTTACTTTAGATTAGGGAAACATGGAGAAGC 439
Query 560 GTTTAAGATTCTTCATGAGGATATTCATTTAGCTGGGTTGGTTCCTGGGATTGATACTTA 619
|||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||
Sbjct 440 GTTTCGGATTCTTCATGAGGATATTCGTTTAGCTGGGTTGGTTCCGGGGATCGATACGTA 499
Query 620 TAACATTCTGCTTGATGCGCTTTGTAAAAGCGGTCATACGGATAATGCGATTGAGTTGTT 679
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TAATATTCTGCTTGATGCGCTTTGTAAAAGCGGTCATACGGATAATGCGATTGAGTTGTT 559
Query 680 TAAGCATCTGAAGAGTCGGGTTAAACCCGAGCTTATGACGTATAATATTCTCATCAATGG 739
||||||| ||||||||||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 560 TAAGCATTTGAAGAGTCGGGTTAAACCGGAGCTTATGACGTATAACATTCTTATTAATGG 619
Query 740 TCTTTGTAAATCGAGAAGGGTTGGTTCTGTGGATTGGATGATGAGAGAGCTTAAGAAATC 799
|||||||||||||||||||||||| |||||| |||||||| |||||||||||| |||| |
Sbjct 620 TCTTTGTAAATCGAGAAGGGTTGGGTCTGTGAATTGGATGCTGAGAGAGCTTAGGAAAGC 679
Query 800 GGGCTATACTCCGAATGCGGTTACGTATACAACGATGCTTAAAATGTATTTTAAGACTAA 859
||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 680 GGGTTATACTCCGAATGCTGTTACGTATACAACGGTGCTTAAAATGTATTTTAAGACTAA 739
Query 860 GAGGATTGAGAAAGGTCTTCAGTTGTTTTTGAAGATGAAGAAAGAAGGGTATACGTTTGA 919
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 740 GAGGATTGAGAAAGGGCTTGAGCTGTTTTTGAAGATGAAGAAAGAAGGGTATACGTTTGA 799
Query 920 CGGGTTTGCGAATTGTGCGGTTGTTAGTGCGTTGATTAAAACCGGAAGAGCAGAGGAGGC 979
||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 800 CGGGTATGCGAATTGTGCGGTTGTTAGTGCTTTGATTAAAACCGGAAGAGGAGAGGAGGC 859
Query 980 GTATGAGTGTATGCACGAGCTTGTGAGAAGTGGTACAAGGAGTCAAGACATTGTTTCGTA 1039
||| | ||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 860 GTACGGGTGTATGAACGAGCTGGTGAGAAGCGGTACACGGAGTCAAGACATTGTTTCGTA 919
Query 1040 CAATACATTGTTGAATTTGTATTTTAAAGATGGGAACTTGGATGCAGTAGATGATCTATT 1099
||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 920 CAACACGTTGTTGAATATGTATTTTAAAGATGGGAATTTGGATGCAGTAGATGATCTATT 979
Query 1100 GGAGGAGATTGAGATGAAGGGGTTGAAACCTGATGACTATACTCATACGATTATAGTCAA 1159
|||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 980 GGAGGAGATTGAGATGAAAGGATTGAAACCTGATGACTACACGCATACGATTATAGTCAA 1039
Query 1160 TGGTTTGTTAAATATAGG-CAATACGGGAGGAGCCGAGAAGCATTTGGCATGTATCGGAG 1218
|||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 1040 TGGTTTGTTAAAAATAGGTCA-TACGGGAGGAGCCGAGAAGCATTTGGCACGTATCGGAG 1098
Query 1219 AGATGGGGATGCAGCCGAGTGTTGTCACTTGTAACTGTTTGATTGATGGGTTGTGCAAAG 1278
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1099 AGATGGGGATGCAGCCGAGTGTCGTCACTTGTAACTGTTTGATTGATGGGTTGTGCAAAG 1158
Query 1279 CAGGTCATGTAGATCGTGCAATGAGGTTGTTTGCGTCAATGGAAGTTAGAGATGAGTTCA 1338
| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 CGGGCCACGTAGATCGTGCGATGAGGTTGTTTGCGTCAATGGAAGTTAGAGATGAGTTCA 1218
Query 1339 CTTACACTTCTGTTGTGCATAATCTATGCAAAGACGGACGGCTTGTTTGTGCTTCGAAGC 1398
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1219 CTTACACTTCTGTTGTGCATAATCTATGCAAAGACGGGCGGCTTGTTTGTGCTTCGAAGC 1278
Query 1399 TGCTCTTGTCGTGTTACAATAAAGGAATGAAGATTCCGTCATCGGCTAGACGAGCAGTGT 1458
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1279 TACTCTTGTCGTGTTACAACAAAGGAATGAAGATTCCGTCATCGGCTAGACGAGCTGTGT 1338
Query 1459 TGTCCGGCATACGGGAGACGGTATCTTACCAAGCAGCAAGGAAGACACATATCAAAATCA 1518
||||||| || |||||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 1339 TGTCCGGTTTAAGGGAGACGGTATCTCACCAGGCAGCAAGGAAGACACATTTCAAAATCA 1398
Query 1519 AAGCAGCTATTGAGTGTAATACACTAATGTACCCTTAA 1556
|||||||||||||||||||| |||||||||| ||||||
Sbjct 1399 AAGCAGCTATTGAGTGTAATGCACTAATGTATCCTTAA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5