BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46690.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494310 jgi|Araly1|494310|fgenesh2_kg.8__126__AT5G46690.1 1851 0.0
> Ahg494310 jgi|Araly1|494310|fgenesh2_kg.8__126__AT5G46690.1
Length=1219
Score = 1851 bits (1002), Expect = 0.0
Identities = 1148/1219 (94%), Gaps = 8/1219 (1%)
Strand=Plus/Plus
Query 1 AAGGAATAAACTTCGTGAAGAG--AAATGACTCTAGAAGCTTTATCATCAAACGGTCTTT 58
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1 AAGGAATAAACGTCGTGAAGAGCAAAATGACTCTAGAAGCTTTATCATCAAACGGTCTCT 60
Query 59 TAAACTTTTTGCTCTCTGAAACTCTTTCACCAACTCCATTCAAGTCTCTCGTCGATCTCG 118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAAACTTTTTGCTCTCCGAAACTCTTTCACCAACTCCATTCAAGTCTCTCGTCGATCTCG 120
Query 119 AGCCATTGCCGGAAAATGATGTCATCATATCGAAGAACACAATTTCGGAGATATCTAATC 178
||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||| |||
Sbjct 121 AGCCATTGCCGGAAAATGATGTCATCATATCCACGAAGACAATTCCGGAGATATCTTATC 180
Query 179 AAGAACCGCCACCACAGCGACAACCACCAGCTACGAATCGAGGGAAGAAGCGGCGGAGGA 238
||||| ||||||||| ||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 181 AAGAAACGCCACCACCGCGACAACCACCAGCGACCAATCGAGGGAAGAAGCGGAGGAGGA 240
Query 239 GGAAGCCTAGGGTTTGCAAAAACGAGGAAGAAGCTGAGAATCAACGAATGACTCACATTG 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GGAAGCCTAGGGTTTGCAAAAACGAAGAAGAAGCTGAGAATCAACGAATGACTCACATTG 300
Query 299 CCGTCGAAAGAAATCGAAGAAGACAAATGAATCAACATCTCTCTGTCTTGCGATCTCTCA 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGTCGAAAGAAACCGAAGAAGACAAATGAATCAACATCTCTCTGTCTTGCGATCTCTCA 360
Query 359 TGCCTCAACCTTTTGCTCACAAGGGTGATCAAGCTTCAATAGTTGGTGGAGCCATAGATT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCCTCAACCTTTTGCTCACAAGGGTGATCAAGCTTCAATAGTTGGTGGAGCCATAGATT 420
Query 419 TCATCAAAGAACTTGAACACAAATTACTATCTCTTGAAGCTCAAAAACATCATAATGCTA 478
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 421 TCATCAAAGAACTTGAACACAAATTACTATCTCTTGAAGCTCAAAAGCGTCATAATGCTA 480
Query 479 AATTAAACCAGTCGGTTACTTCTTCAACAAGTCAAGACTCAAATGGTGAACAAGAGAATC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AATTAAACCAGTCGGTTACTTCTTCAACAAGTCAAGACTCAAATGGTGAACAAGAGAATC 540
Query 539 CTCATCAACCATCTTCACTATCTCTATCGCAGTTCTTTCTTCATTCATACGATCCGAGCC 598
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 541 CTCATCAACCGTCTTCACTATCTCTATCGCATTTCTTTCTTCATTCCTACGATCCCAGCC 600
Query 599 AAGAGAATAGGAACGGCTCAACAAGCTCGGTGAAAACCCCTATGGAAGATCTTGAGGTGA 658
| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 AGGAAAATAGAAACGGCTCAACAAGCTCGGTGAAAACCCCTATGGAAGATCTTGAGGTCA 660
Query 659 CTCTAATCGAAACTCATGCTAACATCAGAATCTTGTCGAGAAGAAGAGGTTTCCGGTGGA 718
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 CTCTAATCGAAACTCATGCTAACATCAGAATCTTGTCGAGGAGAAGAGGTTTCCGGTGGA 720
Query 719 GCACGTTGGCCACCACCAAACCGCCGCAGCTTTCGAAGCTGGTGGCTTCTCTACAATCGC 778
||||| |||||||| | | || || || ||||||||||||||| || |||| |||||||
Sbjct 721 GCACGGTGGCCACCGCGAGGCCACCACAACTTTCGAAGCTGGTGTCTGCTCTGCAATCGC 780
Query 779 TGTCCCTCTCCATTCTTCACCTTAGTGTCACAACATTGGACAATTATGCTATTTACTCCA 838
| |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 781 TTTCCCTCTCCATTCTTCACCTTAGTGTCACAACATTGGACACTTACGTTATTTACTCCA 840
Query 839 TCAGCGCTAAGGTGGAAGAGAGTTGCCAGCTAAGTTCAGTAGATGACATTGCAGGAGCAG 898
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCAGCGCCAAGGTGGAAGAGAGTTGCCAGCTAAGTTCAGTAGATGACATTGCAGGAGCAG 900
Query 899 TTCACCACATGCTAAGTATCATTGAAGAGGAGCCTTTTTGTTGCTCATCAATGTCAGAAT 958
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 TTCACCACATGCTAAGTATCATTGAAGAGGAGCCTTTTTGTTGTTCATCAATGTCAGAAT 960
Query 959 TACCATTTGACTTCTCTTTGAATCACTCAAATGTCACTCATTCTCTCTGAGAAATCTCTT 1018
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 961 TACCATTTGACTTCTCTTTGAATCACTCAAATGCCACTCATTCTCTCTGAGGAATCTCTT 1020
Query 1019 TTTT-GTTGTTGTTATTCCTTCTTTTAATTTTATCACATAGCACATCTTTAGt-tttttt 1076
|||| ||||||||| |||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct 1021 TTTTTGTTGTTGTTGTTCCTTCTTTTAGTTTTATCACATAACACATCTTTAATCTTTTTT 1080
Query 1077 ttt-t--CAGAATGAAGAAACACATAAGCTTTCTTTTAAAATCCTAGGTTCTTTTT-CTG 1132
||| | |||||| |||||| |||||||||||||| || ||||||||||||||| |||
Sbjct 1081 TTTCTTTCAGAATAAAGAAAGGTATAAGCTTTCTTTTTAATTCCTAGGTTCTTTTTTCTG 1140
Query 1133 ACTTTGTAAAGGCTAAATGTGAATTTATAATGGCACATAACATATTAGTTGTTTTACTCT 1192
||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 1141 ACTATGTAAAGACTAAATGTGAATTTACAATGACACATAACATATTAGTTGTTTTAGTCT 1200
Query 1193 TAATTTTATGCATTTTCTG 1211
| ||||||||| ||||||
Sbjct 1201 TCTTTTTATGCACTTTCTG 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5