BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46700.1
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494309 jgi|Araly1|494309|fgenesh2_kg.8__125__AT5G46700.1 1628 0.0
> Ahg494309 jgi|Araly1|494309|fgenesh2_kg.8__125__AT5G46700.1
Length=1119
Score = 1628 bits (881), Expect = 0.0
Identities = 1048/1127 (93%), Gaps = 17/1127 (2%)
Strand=Plus/Plus
Query 1 GAAtctttttctttttctgtctctctttaagtt-caattctat-t-tctctctctatttc 57
|||||||||||||||||||||||||||| |||| |||||||| | |||||||||||| |
Sbjct 1 GAATCTTTTTCTTTTTCTGTCTCTCTTT-AGTTATAATTCTATCTCTCTCTCTCTATTAC 59
Query 58 AAACC-AAACAGATTTCAAGAACACAAAAACAGAGTT-AAAACTCTCATCTCTCCCAAAA 115
||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 60 AAACCAAAACAGATTTCAAGAACACAAAAACAGAGTTAAAAACTCTCACCTCTCCCAAAA 119
Query 116 AAGATGCCTTTAAGCAACAATGTAATTGGTTGCATAAACTTCATCACCGTCCTCCTCTCC 175
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 AAGATGCCTTTAAGTAACAATGTAATCGGTTGCATAAACTTCATCACCGTCCTCCTCTCT 179
Query 176 ATTCCGGTCATCGGCGCCGGAATCTGGCTAGCCATAGGAACAGTAAACTCATGCGTCAAG 235
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 180 ATTCCGGTCATCGGCGCCGGAATCTGGCTAGCCATCGGAACAGTAAACTCCTGCGTCAAG 239
Query 236 CTTCTTCAATGGCCAGTAATAATCCTCGGAGTCTTAATCCTCTTAGTGGGTCTCGCTGGT 295
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 ATTCTTCAGTGGCCAGTAATAATCCTCGGAGTCCTAATCCTCTTAGTGGGTCTCGCTGGT 299
Query 296 TTCATTGGAGGGTTTTGGAGAATCACATGGCTTCTTGTTGTTTACTTAATCGCCATGCTT 355
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 300 TTCATTGGAGGGTTTTGGAGAATCACATGGCTTCTAGTTGTTTACTTAATAGCCATGCTT 359
Query 356 ATTCTCATTGTACTTTTGGGTTG-CCTTGTCGGATTTATTTACATGGTTACCA-TAAGAG 413
||||||||||||||||||| || |||||||||||||||||||||||||||| ||| ||
Sbjct 360 GTTCTCATTGTACTTTTGGG-TGTTCTTGTCGGATTTATTTACATGGTTACCATTAA-AG 417
Query 414 GCTCTGGTCATCCAGAACCAAGTAGAGCTTATCTTGAGTATAGTCTTCAAGATTTCTCTG 473
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 GCGCTGGTCATCCAGAACCAAGTAGAGCTTATCTTGAGTATAGTCTTCAAGATTACTCTA 477
Query 474 GTTGGTTACGTAGAAGAGTTCAGAGATCTTATAAATGGGAAAGGATTCGTACTTGTTTGA 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTTGGTTACGTAGAAGAGTTCAGAGATCTTATAAATGGGAAAGGATTCGTACTTGTTTGA 537
Query 534 GTACAACTACCATTTGCCCTGAACTAAATCAGAGATACACTTTGGCTCAAGATTTCTTCA 593
|||| ||| | |||||||||||||| |||||||||| |||||||||| ||||||||| |
Sbjct 538 GTACTACTTCTATTTGCCCTGAACTTAATCAGAGATTCACTTTGGCTTTAGATTTCTTTA 597
Query 594 ATGCTCATCTTGATCCCATTCAATCTGGTTGCTGCAAGCCCCCAACAAAATGTGGATTCA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 598 ATGCTCATCTTGATCCCATTCAATCTGGTTGCTGCAAGCCCCCAACAAAATGTGGTTTCA 657
Query 654 CATTTGTTAATCCTACTTATTGGATAAGTCCCATAGATATGTCTGCTGATATGGATTGTC 713
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CATTTGTAAACCCAACTTATTGGATAAGTCCCATAGATATGTCTGCTGATATGGATTGTT 717
Query 714 TA-AATTGGAGCAATGACCAAAACACTTTGTGTTACACTTGTGATTCTTGTAAAGCCGGC 772
|| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 TACAAT-GGAGCAATGATCAAAACACTTTGTGTTACAGTTGTGATTCTTGTAAAGCCGGT 776
Query 773 TTGCTCGCAAATATTAAGGTAGATTGGTTAAAAGCGGATATCTTTCTACTCTTGGCGCTT 832
||||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 777 TTGCTAGCAAATATTAAGATAGATTGGTTAAAAGCGGATATCTTTCTCCTTTTGGCGCTA 836
Query 833 ATCGGATTGATTATCGTCTACATTATCGGGTGCTGCGCATTCCGTAATGCGGAAACTGAG 892
||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 837 ATCGGGTTGATCATCGTTTACATTATCGGTTGCTGCGCGTTCCGAAATGCGGAAACTGAG 896
Query 893 GATATTTTCAGGAAGTACAAGCAGGGTTATACTTGATCAAGATGAGAAGTTTAGTGGCAA 952
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GATATCTTCAGGAAGTACAAGCAGGGTTATACTTGATCAAGATGAGAAGTTTAGTGGCAA 956
Query 953 AACTGCGAGGAATTTTAATATTTACTGGATTCCTGTATTTTAGTTTCTCTACGTTTTGGC 1012
||||| |||||||||||| | ||| ||||||||| || ||||||||||||||||||||||
Sbjct 957 AACTGTGAGGAATTTTAAAACTTATTGGATTCCTTTACTTTAGTTTCTCTACGTTTTGGC 1016
Query 1013 CCCTGTAGTATGTTTTTGTGTGAACTACCTGAACATTCGTTGTAACTGGAAG-ATTATGT 1071
||||||||| ||||||| |||| |||||| ||||||| |||||||||||| | || |||
Sbjct 1017 CCCTGTAGTCTGTTTTTATGTGCACTACCAGAACATTTGTTGTAACTGGAGGCATG-TGT 1075
Query 1072 TGTATATCTATCTTTGATTTGGGTTTGTGAAACTTAACTAATTATCT 1118
||| ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1076 TGTCTATCT--CTTTGATTTGG-TTTGTGAAACTTAATTAATTATCT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41668348281
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5