BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46710.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948270 jgi|Araly1|948270|scaffold_800157.1 1011 0.0
> Ahg948270 jgi|Araly1|948270|scaffold_800157.1
Length=721
Score = 1011 bits (547), Expect = 0.0
Identities = 667/725 (92%), Gaps = 7/725 (1%)
Strand=Plus/Plus
Query 189 GTCTTTTACTGCATTTTGAAATGGCGATTGAAGATTACGAGAACCCAAATCGAGAAATCA 248
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTTTTACTACATTTTGAAATGGCGATTGAAGATTACGAGAACCCAAATCGAGAAATCA 60
Query 249 AACCTAAGAACAGAAGATTCATGGAAGGAGAGAATCAGTGGCCTATATGGCTCAAACCTT 308
||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||
Sbjct 61 AACCTAAGAACAGAAGATTCATGGAAGAAGAGAATCAATGGCCTCTATGGCTGAAACCTT 120
Query 309 TACTAAACCAACACTTTTTTGCTCAATGCAAGTTTCATGGACACTTACCTAGAACCGAAT 368
|||||||| ||||||| |||| ||||||||||| ||||||||||| ||| | || |||||
Sbjct 121 TACTAAACGAACACTTCTTTGTTCAATGCAAGTCTCATGGACACTCACCGAAAAGCGAAT 180
Query 369 GCAAAATGTATTGCTTAGACTGTACCAATGACTCGTTTTGTTCTCTCTGTCTTTCTGAAC 428
|||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
Sbjct 181 GCAATATGTATTGCTTAGACTGTACCAATGACTCGCTTTGTTCTCTATGTCTTAATGACC 240
Query 429 ACGAGAATCATCGTACCATTCAGATAAGGATATCATCTTATCATAATGTGACAAAGGTCG 488
|| |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 241 ACAAGAACCATCGTACCATTCAGATAAGGATATCATCTTATCATAATGTGATAAGGGTCA 300
Query 489 ATGAGATACAGAAATACTTAGACATATCAAGCATTCAGACATATGTGATCAATAGCTCAA 548
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ATGAGATACAGAAGTACTTAGACATATCAAGCATTCAGACATATGTGATCAATAGCGCAA 360
Query 549 AGGTTTTGTTCTTGAATGAGAGGCCTCAGTCTAAGCCTGGTAAAGGTTTTACTAATGCCT 608
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 361 AGGTTTTGTTCTTGAATGAGAGGCCTCAGTCTAGGCCTGGTAAAGGGTTTACTAATACCT 420
Query 609 GCATGGTCTGTTATCGTGGCCTTGCCGAAAACTGCTTCCGCTTCTGCTCTATTGGCTGCA 668
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 GCAAGGTCTGTTATCGTGGCCTTGCCGAAAATTGCTTCCGCTTCTGCTCTATTGGCTGCA 480
Query 669 AGGTTGCAGGAACATCTGGA-GTCTTC-CAGAAGAGAGTGAAGCATACAACGAATGACTC 726
|||||||||||||||||||| | ||| | |||||||||||||||||| |||| ||| ||
Sbjct 481 AGGTTGCAGGAACATCTGGAAG-CTTTGC-GAAGAGAGTGAAGCATACGACGATTGAATC 538
Query 727 AGATAATTCAAACAACAGTTCTGGAGTGGAGAATAACAGTTCTGGAGCAGAGAATGGTAA 786
||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 539 AGACAATTCAAGCAACAGTTCTGGAGTAGAGAATAACAGTTCAGGAGCAGAGAATGACAA 598
Query 787 TTCAAATCTGCAGAGTCTCAGTCCACCTACACCTCAATTTCCTCCTCGTTCTCTGCGAAA 846
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 599 TTCAAATCTGCAGAGTCTCAGCCCACCAACACCTCAATTTCCTCCTGGTTCTCTGCGAAA 658
Query 847 GCGAC-TAAGGAAGGGAATTCCTCACCGAGCTCCATTTAGTTGAGATTGTGATCAAGAAA 905
||||| || | |||||||||||||||| ||||||| | |||||||||| ||||||||
Sbjct 659 GCGACGTA-GAAAGGGAATTCCTCACCAAGCTCCACTGGGTTGAGATTGA-ATCAAGAAG 716
Query 906 AAGAA 910
|||||
Sbjct 717 AAGAA 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5