BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46720.1
Length=581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948269 jgi|Araly1|948269|scaffold_800156.1 848 0.0
> Ahg948269 jgi|Araly1|948269|scaffold_800156.1
Length=566
Score = 848 bits (459), Expect = 0.0
Identities = 528/561 (94%), Gaps = 5/561 (1%)
Strand=Plus/Plus
Query 4 AACTCATCGCCATGGGAGGATCAAACAAGAACCTCATATTCGTGTACGGAACGTTAAAAA 63
||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 10 AACTCGCCGCCATGGGAGGATCACACAAGAACCTCATCTTCGTGTACGGAACGTTAAAAA 69
Query 64 GAAACCATCGAAACCATTTCCTCCTAGAAGATCTGATCTCAACAAACGACGCCGTTTACA 123
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 70 GAAACCATCGAAACCATTTCCTTTTAGAAGATCTGATCTCAACAAACGACGCCGTTTACA 129
Query 124 TAGGACAACGCACGACCCGGTTACAATACCCGCTCGTTACAGGTCTCTATGGGATCCCTT 183
| || |||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||
Sbjct 130 TCGGCCAACGCACGACCCGGTTACAGTACCCGCTCGTTACGGGTCTCTACGGGATTCCTT 189
Query 184 ACTTAATCAACAAATCCGGGTCGGGTCAAAAGATCCGAGGCGAGCTTTATTCGGTTTCAA 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 190 ACTTAATCAACAAATCCGGGTCGGGTCAAAAGATCCGAGGTGAGCTTTATTCGGTTTCAA 249
Query 244 AACGTGGGCTTGTACGTCTTGATGAATTGGAAGGTATCAAAGTTAATCACTACGAGAGAT 303
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 250 AACGTGGGCTTGTACGTCTTGATGAATTGGAAGGGATCAAAGTGAATCACTACGAGAGAT 309
Query 304 TACCAATAGAAGTTATTGAGGAAGATGATGAAGAAGAAGAATCAAACGGTGTCGTCTTGG 363
||||||| ||||||||||| | | | ||||||||||||||| ||||||| ||||| ||||
Sbjct 310 TACCAATTGAAGTTATTGATG-A-A-GATGAAGAAGAAGAACCAAACGGCGTCGTTTTGG 366
Query 364 CTGAGGCTTATTTTGCTCACTT-TGGATTTGGTGAGAGATTGTGGGAGAAGAAAGGTAAA 422
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 367 CTGAGGCTTATTTTGCTCA-TTGTGGATTTGGTGAGAGATTGTGGGAGAAGAAAGGTAAA 425
Query 423 TGTGGGATGTGTGAATTTGGTGAAAACGATGGCGTTTTGTATGTTCGTCCTAAAGATAGG 482
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 426 TGTGGGATGTGTGAATTTGGTGAAAACGATGGCGTTTTGTATGTTAGGGTTAAAGATAGA 485
Query 483 CCAATGTTTAGCTCTGTTCTTGATGAAATTGAAACTTTTGTGTCTTCTAGTAATGATTGA 542
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 486 CCAAGGTTTAGCTCTGTTCTTGATGAAATTGAAGCTTTTGTGTCTTCTAGTAATGATTGA 545
Query 543 TTACTAATTTAATTCAATGGG 563
|||||||||| ||||||||||
Sbjct 546 TTACTAATTTGATTCAATGGG 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21252663073
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5