BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46740.1 Length=2588 Score E Sequences producing significant alignments: (Bits) Value Ahg948267 jgi|Araly1|948267|scaffold_800154.1 2560 0.0 Ahg927290 jgi|Araly1|927290|scaffold_202851.1 152 1e-35 > Ahg948267 jgi|Araly1|948267|scaffold_800154.1 Length=2217 Score = 2560 bits (1386), Expect = 0.0 Identities = 1825/2030 (90%), Gaps = 58/2030 (3%) Strand=Plus/Plus Query 493 GAACCCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAATTGCGCCACCAGCTCA 552 |||| ||||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 193 GAACGCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAACTACACCACCAGCTCA 252 Query 553 GATTTCGCCTGTTAGCAACAACAATCATCTCCGGATCACGAACACGTCAGATTCGTATCT 612 |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| Sbjct 253 GATTTCGCCTGTTAGCAACAACAATCTTCTCCAAATCACGAGTACGTCAGATTCGTATCT 312 Query 613 TTATCGTCCACCAAGGAGATACATCGAG--T-AT----G--AAAGCGATGACGACGAGCT 663 ||| ||||||||||||||||||| ||| | || | ||||||| ||||| || || Sbjct 313 ATATTGTCCACCAAGGAGATACATAGAGAATAATGACGGTCAAAGCGACGACGATGACCT 372 Query 664 TAATAAGATGGAACCAACAAAACCTCTACAGTTATCATGGTGGTATCCGAGGATTGAACC 723 || |||||| || ||||||||||| || ||| | ||||||||||||||||| |||||||| Sbjct 373 TACTAAGATTGAGCCAACAAAACCACTTCAGCTCTCATGGTGGTATCCGAGAATTGAACC 432 Query 724 CACCGGTGTTGGGGCTGGGCTATATAATTCAGGCAACACTTGTTTCATAGCTTCTGTGTT 783 |||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 433 CACCGGTGTTGGTGCTGGATTGTATAATTCAGGCAACACTTGTTTCATAGCTTCTGTGTT 492 Query 784 ACAGTGCTTCACTCATACTGTGCCTCTTATCGATAGTCTTCGTTCATTCATGTATGGAAA 843 || |||||||||||||||||||||||||| || ||||||||||||| ||||||| ||| Sbjct 493 GCAATGCTTCACTCATACTGTGCCTCTTATTGAGAGTCTTCGTTCATACATGTATCAAAA 552 Query 844 CCCTTGCAACTGTGGAAATGAGAAGTTCTGTGTAATGCAAGCTCTTCGAGATCATATTGA 903 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || Sbjct 553 CCCTTGCAACTGTGGCAATGAGAAGTTCTGTGTTATGCAAGCTCTTCGAGATCATATCGA 612 Query 904 GCTTGCTCTGAGGTCTTCAGGATATGGAATAAACATTGATAGATTTCGTGATAACTTGAC 963 ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 613 GCTTGCTCTCAGGTCTTCAGGACATGGAATAAACATTGATAGATTTCGTGATAACCTGAC 672 Query 964 TTATTTTTCATCTGATTTTATGATAAACCACCAAGAAGATGCACACGAGTTTCTACAATC 1023 | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 673 TCATTTTTCATCTGATTTTATGATAAACCACCAAGAAGATGCACATGAGTTTCTACAGTC 732 Query 1024 ATTTCTGGATAAGTTAGAGAGATGTTGTTTAGATCCTAAGAATCAGCTTGGCTCTGTCTC 1083 ||| | |||||| ||||||||||||||||||||||||||||| ||| ||||||| ||| Sbjct 733 GTTTTTAGATAAGCTAGAGAGATGTTGTTTAGATCCTAAGAATGAGCCTGGCTCTATCTT 792 Query 1084 ATCTCAAGATTTGAACATTGTTGACAATGTCTTTGGTGGCGGTCTCATGAGTACGCTTTG 1143 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 793 ATCTCAAGATTTTAACATTGTTGACAATGTCTTTGGTGGCGGTCTCATGAGTACGCTTTG 852 Query 1144 TTGTTGCAATTGTAATTCTGTTTCCAACACGTTTGAACCTTCTCTTGGATGGAGTCTGGA 1203 ||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 853 TTGCTGCAATTGCAATTCCGTTTCCAACACATTTGAACCTTCTCTTGGATGGAGTCTGGA 912 Query 1204 AATAGAAGATGTTAATACCCTCTGGAAAGCTCTAGAATCCTTTACATGTGTCGAAAAACT 1263 ||| ||||||||| ||| |||||||| |||||||| |||||||||||||| |||||||| Sbjct 913 AATTGAAGATGTTGATAACCTCTGGAGTGCTCTAGATTCCTTTACATGTGTAGAAAAACT 972 Query 1264 TGAGGACCAGTTAACATGTGATAACTGTAAGGAGAAAGTCACAAAGGAGAAGCAACTTAG 1323 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 TGAGGACCAGTTAACATGTGATAACTGTAAGGAGAAAGTCACAAAGGAGAAGCAACTTAA 1032 Query 1324 GTTCGATAAGTTGCCGCCGGTTGCTACATTCCATCTTAAGAGGTTTACTAATGATGGAGT 1383 ||||||| ||||||||||||||||||| |||||||||||||| || | ||||||||||| Sbjct 1033 GTTCGATCAGTTGCCGCCGGTTGCTACTTTCCATCTTAAGAGATTCAAGAATGATGGAGT 1092 Query 1384 TACTATGGAGAAGATCTTCGATCATATTGAGTTCCCTTTGGAGTTGGATTTG-TCCCCTT 1442 ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| || Sbjct 1093 TACTATGGAGAAGATCTTCGAGCATGTTGAGTTCCCTTTGGAGTTGGATTTGCTCCC-TT 1151 Query 1443 TCATGAGCAGTAACCATGATCCTGAGGTTTCCACAAGATATCATCTTTATGCCTTTGTGG 1502 |||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||| Sbjct 1152 TCATGAGCGGTAACCAAAATCCTGAGGTTTCCACAAAATATCATCTTTACGCCTTTGTGG 1211 Query 1503 AGCATATTGGGATTAGAGCAACCTTTGGTCATTATTCCTCTTATGTGAGATCAGCTCCTG 1562 |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 1212 AGCATATTGGGATTAGAGCAACTTTTGGTCATTACTCCACTTATGTGAGATCAGCTCCTG 1271 Query 1563 AGACATGGCATAATTTTGATGACTCCAAGGTCACGAGAATCAGCGAAGAGAGAGTTCTAT 1622 |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1272 AGACCTGGCATAATTTTGATGACTCCAAGGTCACCAGAATCAGCGAAGACAGAGTTCTAT 1331 Query 1623 CCCGTCCTGCTTATATATTGTTTTATGCAAGAGAAGGAACTCCTTGGTTTTCCAGTACTT 1682 |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 1332 CCCGTCCTGCGTATATATTATTTTATGCAAGAGAAGGAACTCGTTGGTTTTCCAGTACTT 1391 Query 1683 TTGAACAGTTGAAGACAGTGTTTGAAGCTACTCCGTTACATTTTTCACCAGTA-TCTGTG 1741 |||||||||||||| ||||||||||||||||||||||||||||||||||| | || ||| Sbjct 1392 TTGAACAGTTGAAGGCAGTGTTTGAAGCTACTCCGTTACATTTTTCACCAA-ACTCAGTG 1450 Query 1742 CTTGATAACAGTTACGAGAGTGTTGATAATTCCAGTAAAGCCTGCAACGACTCAGTGGGA 1801 ||||| |||||||| || ||||||| |||||| | |||| |||||||||||| | |||| Sbjct 1451 CTTGAAAACAGTTATGATAGTGTTGGTAATTCTAACAAAGACTGCAACGACTCGGGGGGA 1510 Query 1802 GTATCGATCCCTGATGTAAAATGGCCAGATTCTT-GCTGTCAAGAGCCAAAAGAGGAAGT 1860 || ||||||||||||| ||| ||| ||||| ||| ||||||| ||||||||||| ||||| Sbjct 1511 GTGTCGATCCCTGATGGAAAGTGGTCAGAT-CTTTGCTGTCATGAGCCAAAAGAAGAAGT 1569 Query 1861 GTTCCATTCAGCCGAGTCTAGCAACAATGAAGATTCTTCGGCCATGATTGATGCTCTCGG 1920 ||| |||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||| Sbjct 1570 GTTTCATTCAGCTGAGTCTAACAACAGTGAAGATTCTTCAGCCATGATTGATGCTCTCGA 1629 Query 1921 GTCACCT----C--A--A-TCTGAGAAACCATTTGCTGAAACCTCCCAACAGACAGAGCC 1971 ||||||| | | | ||||||||||| |||| ||||||||| ||||||| ||| || Sbjct 1630 GTCACCTGAGGCTGATGAATCTGAGAAACCTTTTGTTGAAACCTCTCAACAGAGAGAACC 1689 Query 1972 TGAGTCATGTCCAACTGAAAACAAAGCTTACATCGATAAATCTGAGAAGCCATTTGCTGA 2031 ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| |||| Sbjct 1690 TGAGTCATGTCCAGCTGGAAACAAAGCTAACATCGATGAATCTGAGAAGCCATTTACTGA 1749 Query 2032 GACCTCTCAACCGAAAGAACCTAAGCCAT-T-----TGCTGACAGAGCTAGCATCGATGC 2085 ||||||||||| |||||||||| ||||| | |||||||||||||||||| ||||| Sbjct 1750 GACCTCTCAACAGAAAGAACCTGAGCCAAGTCCAGCTGCTGACAGAGCTAGCATTGATGC 1809 Query 2086 CCCTC-TG-C--TC-----AAGGTTCAGAATCAAGACATATCTCCAAAACGCAAAGCTGG 2136 ||||| || | || ||||||||||| |||||||| |||||||||||||||||||| Sbjct 1810 CCCTCATGTCCCTCTGCTCAAGGTTCAGAACCAAGACATTTCTCCAAAACGCAAAGCTGG 1869 Query 2137 TGAGAGAGCTACGCTCGGTGGACCTAAGCTCAAG-TATCAAAAACCAAATTCCCATCAGA 2195 |||||||||||||||||||||||| |||| |||| | |||||||||||||||||||| || Sbjct 1870 TGAGAGAGCTACGCTCGGTGGACCGAAGCGCAAGGT-TCAAAAACCAAATTCCCATCCGA 1928 Query 2196 AACGCCAAGGAACCTTTCAGATTCAACGTGCGCATTTGCAAACTAAGAAGCAAGAAGAAT 2255 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1929 AACGCCAAGGAAGCTTTCAGATTCAACGTGCGCATTTGCAAACTAAGAACCAAGAAGAAA 1988 Query 2256 CTCGTAAAACAAAGCGGCCGTTGTTTAGAAGCAATGTTGCTGCTTCTGCTCCAGATCCTA 2315 |||||| |||||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 1989 CTCGTAGAACAAAGCGGGCGGCGTATAGAAGCAATGTTGCTGCTTCTGCTCCAGATCCTA 2048 Query 2316 AGTACAAAAATCATGCTCT-TTCATATCTCAACAGGGCCCAGACACCTCGCGCTCGAAAG 2374 |||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||| | Sbjct 2049 AGTACAGAAATCATGCT-TATTCATATCTCAACAGGGTCCAGACACCTCGCGCTCGAATG 2107 Query 2375 CTCGCTAATGCTTTGAGTGATTCTCCGACCAAGAAAAAGAAAAGCTCTA-A---C--A-- 2426 || |||||||||||| ||| ||||||||||||||||||||||| ||| | | | | Sbjct 2108 CTTGCTAATGCTTTGGGTGGTTCTCCGACCAAGAAAAAGAAAATCTCAACAGGGCCCAGA 2167 Query 2427 ----TGAGAAGATC---TATTAAACTTTGAAGAGTTAGCTATTAGAAAAT 2469 ||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 2168 CACATGAAAAGATCAACTATTAAACTTTGAAGAGTTAGCTATTAGAAAAT 2217 Score = 309 bits (167), Expect = 7e-83 Identities = 215/238 (90%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 229 TCCGTTCTCGGTTTTGTTGTTAATGGCGGAATTTAGTGACCCACCACCATCTAATCTCTC 288 |||| ||| ||||| ||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1 TCCGATCTGGGTTTCGTTGTTAATGGCGGAATTTAGTGACCCACCACCTTCAAATCTCTC 60 Query 289 TTCTTCTCATAAATTAACTAAACCCAACCAAACCCTAGATGAGTCTTCACCAACCGCGCC 348 |||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| || Sbjct 61 TTCTTCTCCTAAATTAGCTAAACCCAACCAAACCCTAGATGAGTCCACACCAACCGCTCC 120 Query 349 AATTCGAGACCTTGTTACTAACTCGCTCTCTCTTTCCTCACCGATTCGTCAGATTCAAGC 408 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | Sbjct 121 AATTCGAGACCTTGTTACTCACTCGCTCTCTCTTTCGTCACCGATTCGTCAGATTCAA-C 179 Query 409 CCT-TTCTCCGGCAAAAC-CAGACGGGTCTTCCTCTTCTCCGCCGGACAAAACCCTAA 464 | | ||||||||| || | |||| | |||||||||||||||| | || |||||||||| Sbjct 180 CTTCTTCTCCGGCGAA-CGCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAA 236 > Ahg927290 jgi|Araly1|927290|scaffold_202851.1 Length=385 Score = 152 bits (82), Expect = 1e-35 Identities = 141/169 (83%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 734 GGG-GCTGGGCTATAT-AATTCAGGCAACACTTGTTTCATAGCTTCTGTGTTACAGTGCT 791 ||| || ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 43 GGGTGCAGGGCTATATAAATTCAGGCAACACTTGTTTCATAGCTTCTGCGTTGCAGTGCT 102 Query 792 TCACTCATACTGTGCCTCTTATCGATAGTCTTCGTTCATTCATGTATGGAAA-CCCTTGC 850 |||||||||||||||||||| | || || |||| |||| || | | ||| ||||||| Sbjct 103 TCACTCATACTGTGCCTCTTCTTGAGAGCCTTCACTCATACAAATGTC-AAAGCCCTTGC 161 Query 851 AACTGTGGAAATGAGA-AGTTCTGTGTAATGCAAGCTCTTCGAGATCAT 898 ||| |||| | |||| | |||||||| ||||| ||||| | ||||||| Sbjct 162 AACCGTGGCAGCGAGACA-TTCTGTGTTATGCATGCTCTCCAAGATCAT 209 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97587207690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5