BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46740.1
Length=2588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948267 jgi|Araly1|948267|scaffold_800154.1 2560 0.0
Ahg927290 jgi|Araly1|927290|scaffold_202851.1 152 1e-35
> Ahg948267 jgi|Araly1|948267|scaffold_800154.1
Length=2217
Score = 2560 bits (1386), Expect = 0.0
Identities = 1825/2030 (90%), Gaps = 58/2030 (3%)
Strand=Plus/Plus
Query 493 GAACCCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAATTGCGCCACCAGCTCA 552
|||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 193 GAACGCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAACTACACCACCAGCTCA 252
Query 553 GATTTCGCCTGTTAGCAACAACAATCATCTCCGGATCACGAACACGTCAGATTCGTATCT 612
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 253 GATTTCGCCTGTTAGCAACAACAATCTTCTCCAAATCACGAGTACGTCAGATTCGTATCT 312
Query 613 TTATCGTCCACCAAGGAGATACATCGAG--T-AT----G--AAAGCGATGACGACGAGCT 663
||| ||||||||||||||||||| ||| | || | ||||||| ||||| || ||
Sbjct 313 ATATTGTCCACCAAGGAGATACATAGAGAATAATGACGGTCAAAGCGACGACGATGACCT 372
Query 664 TAATAAGATGGAACCAACAAAACCTCTACAGTTATCATGGTGGTATCCGAGGATTGAACC 723
|| |||||| || ||||||||||| || ||| | ||||||||||||||||| ||||||||
Sbjct 373 TACTAAGATTGAGCCAACAAAACCACTTCAGCTCTCATGGTGGTATCCGAGAATTGAACC 432
Query 724 CACCGGTGTTGGGGCTGGGCTATATAATTCAGGCAACACTTGTTTCATAGCTTCTGTGTT 783
|||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 433 CACCGGTGTTGGTGCTGGATTGTATAATTCAGGCAACACTTGTTTCATAGCTTCTGTGTT 492
Query 784 ACAGTGCTTCACTCATACTGTGCCTCTTATCGATAGTCTTCGTTCATTCATGTATGGAAA 843
|| |||||||||||||||||||||||||| || ||||||||||||| ||||||| |||
Sbjct 493 GCAATGCTTCACTCATACTGTGCCTCTTATTGAGAGTCTTCGTTCATACATGTATCAAAA 552
Query 844 CCCTTGCAACTGTGGAAATGAGAAGTTCTGTGTAATGCAAGCTCTTCGAGATCATATTGA 903
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 553 CCCTTGCAACTGTGGCAATGAGAAGTTCTGTGTTATGCAAGCTCTTCGAGATCATATCGA 612
Query 904 GCTTGCTCTGAGGTCTTCAGGATATGGAATAAACATTGATAGATTTCGTGATAACTTGAC 963
||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 613 GCTTGCTCTCAGGTCTTCAGGACATGGAATAAACATTGATAGATTTCGTGATAACCTGAC 672
Query 964 TTATTTTTCATCTGATTTTATGATAAACCACCAAGAAGATGCACACGAGTTTCTACAATC 1023
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 673 TCATTTTTCATCTGATTTTATGATAAACCACCAAGAAGATGCACATGAGTTTCTACAGTC 732
Query 1024 ATTTCTGGATAAGTTAGAGAGATGTTGTTTAGATCCTAAGAATCAGCTTGGCTCTGTCTC 1083
||| | |||||| ||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 733 GTTTTTAGATAAGCTAGAGAGATGTTGTTTAGATCCTAAGAATGAGCCTGGCTCTATCTT 792
Query 1084 ATCTCAAGATTTGAACATTGTTGACAATGTCTTTGGTGGCGGTCTCATGAGTACGCTTTG 1143
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 ATCTCAAGATTTTAACATTGTTGACAATGTCTTTGGTGGCGGTCTCATGAGTACGCTTTG 852
Query 1144 TTGTTGCAATTGTAATTCTGTTTCCAACACGTTTGAACCTTCTCTTGGATGGAGTCTGGA 1203
||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 853 TTGCTGCAATTGCAATTCCGTTTCCAACACATTTGAACCTTCTCTTGGATGGAGTCTGGA 912
Query 1204 AATAGAAGATGTTAATACCCTCTGGAAAGCTCTAGAATCCTTTACATGTGTCGAAAAACT 1263
||| ||||||||| ||| |||||||| |||||||| |||||||||||||| ||||||||
Sbjct 913 AATTGAAGATGTTGATAACCTCTGGAGTGCTCTAGATTCCTTTACATGTGTAGAAAAACT 972
Query 1264 TGAGGACCAGTTAACATGTGATAACTGTAAGGAGAAAGTCACAAAGGAGAAGCAACTTAG 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TGAGGACCAGTTAACATGTGATAACTGTAAGGAGAAAGTCACAAAGGAGAAGCAACTTAA 1032
Query 1324 GTTCGATAAGTTGCCGCCGGTTGCTACATTCCATCTTAAGAGGTTTACTAATGATGGAGT 1383
||||||| ||||||||||||||||||| |||||||||||||| || | |||||||||||
Sbjct 1033 GTTCGATCAGTTGCCGCCGGTTGCTACTTTCCATCTTAAGAGATTCAAGAATGATGGAGT 1092
Query 1384 TACTATGGAGAAGATCTTCGATCATATTGAGTTCCCTTTGGAGTTGGATTTG-TCCCCTT 1442
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||
Sbjct 1093 TACTATGGAGAAGATCTTCGAGCATGTTGAGTTCCCTTTGGAGTTGGATTTGCTCCC-TT 1151
Query 1443 TCATGAGCAGTAACCATGATCCTGAGGTTTCCACAAGATATCATCTTTATGCCTTTGTGG 1502
|||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1152 TCATGAGCGGTAACCAAAATCCTGAGGTTTCCACAAAATATCATCTTTACGCCTTTGTGG 1211
Query 1503 AGCATATTGGGATTAGAGCAACCTTTGGTCATTATTCCTCTTATGTGAGATCAGCTCCTG 1562
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1212 AGCATATTGGGATTAGAGCAACTTTTGGTCATTACTCCACTTATGTGAGATCAGCTCCTG 1271
Query 1563 AGACATGGCATAATTTTGATGACTCCAAGGTCACGAGAATCAGCGAAGAGAGAGTTCTAT 1622
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1272 AGACCTGGCATAATTTTGATGACTCCAAGGTCACCAGAATCAGCGAAGACAGAGTTCTAT 1331
Query 1623 CCCGTCCTGCTTATATATTGTTTTATGCAAGAGAAGGAACTCCTTGGTTTTCCAGTACTT 1682
|||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1332 CCCGTCCTGCGTATATATTATTTTATGCAAGAGAAGGAACTCGTTGGTTTTCCAGTACTT 1391
Query 1683 TTGAACAGTTGAAGACAGTGTTTGAAGCTACTCCGTTACATTTTTCACCAGTA-TCTGTG 1741
|||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1392 TTGAACAGTTGAAGGCAGTGTTTGAAGCTACTCCGTTACATTTTTCACCAA-ACTCAGTG 1450
Query 1742 CTTGATAACAGTTACGAGAGTGTTGATAATTCCAGTAAAGCCTGCAACGACTCAGTGGGA 1801
||||| |||||||| || ||||||| |||||| | |||| |||||||||||| | ||||
Sbjct 1451 CTTGAAAACAGTTATGATAGTGTTGGTAATTCTAACAAAGACTGCAACGACTCGGGGGGA 1510
Query 1802 GTATCGATCCCTGATGTAAAATGGCCAGATTCTT-GCTGTCAAGAGCCAAAAGAGGAAGT 1860
|| ||||||||||||| ||| ||| ||||| ||| ||||||| ||||||||||| |||||
Sbjct 1511 GTGTCGATCCCTGATGGAAAGTGGTCAGAT-CTTTGCTGTCATGAGCCAAAAGAAGAAGT 1569
Query 1861 GTTCCATTCAGCCGAGTCTAGCAACAATGAAGATTCTTCGGCCATGATTGATGCTCTCGG 1920
||| |||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 1570 GTTTCATTCAGCTGAGTCTAACAACAGTGAAGATTCTTCAGCCATGATTGATGCTCTCGA 1629
Query 1921 GTCACCT----C--A--A-TCTGAGAAACCATTTGCTGAAACCTCCCAACAGACAGAGCC 1971
||||||| | | | ||||||||||| |||| ||||||||| ||||||| ||| ||
Sbjct 1630 GTCACCTGAGGCTGATGAATCTGAGAAACCTTTTGTTGAAACCTCTCAACAGAGAGAACC 1689
Query 1972 TGAGTCATGTCCAACTGAAAACAAAGCTTACATCGATAAATCTGAGAAGCCATTTGCTGA 2031
||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1690 TGAGTCATGTCCAGCTGGAAACAAAGCTAACATCGATGAATCTGAGAAGCCATTTACTGA 1749
Query 2032 GACCTCTCAACCGAAAGAACCTAAGCCAT-T-----TGCTGACAGAGCTAGCATCGATGC 2085
||||||||||| |||||||||| ||||| | |||||||||||||||||| |||||
Sbjct 1750 GACCTCTCAACAGAAAGAACCTGAGCCAAGTCCAGCTGCTGACAGAGCTAGCATTGATGC 1809
Query 2086 CCCTC-TG-C--TC-----AAGGTTCAGAATCAAGACATATCTCCAAAACGCAAAGCTGG 2136
||||| || | || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1810 CCCTCATGTCCCTCTGCTCAAGGTTCAGAACCAAGACATTTCTCCAAAACGCAAAGCTGG 1869
Query 2137 TGAGAGAGCTACGCTCGGTGGACCTAAGCTCAAG-TATCAAAAACCAAATTCCCATCAGA 2195
|||||||||||||||||||||||| |||| |||| | |||||||||||||||||||| ||
Sbjct 1870 TGAGAGAGCTACGCTCGGTGGACCGAAGCGCAAGGT-TCAAAAACCAAATTCCCATCCGA 1928
Query 2196 AACGCCAAGGAACCTTTCAGATTCAACGTGCGCATTTGCAAACTAAGAAGCAAGAAGAAT 2255
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1929 AACGCCAAGGAAGCTTTCAGATTCAACGTGCGCATTTGCAAACTAAGAACCAAGAAGAAA 1988
Query 2256 CTCGTAAAACAAAGCGGCCGTTGTTTAGAAGCAATGTTGCTGCTTCTGCTCCAGATCCTA 2315
|||||| |||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1989 CTCGTAGAACAAAGCGGGCGGCGTATAGAAGCAATGTTGCTGCTTCTGCTCCAGATCCTA 2048
Query 2316 AGTACAAAAATCATGCTCT-TTCATATCTCAACAGGGCCCAGACACCTCGCGCTCGAAAG 2374
|||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||| |
Sbjct 2049 AGTACAGAAATCATGCT-TATTCATATCTCAACAGGGTCCAGACACCTCGCGCTCGAATG 2107
Query 2375 CTCGCTAATGCTTTGAGTGATTCTCCGACCAAGAAAAAGAAAAGCTCTA-A---C--A-- 2426
|| |||||||||||| ||| ||||||||||||||||||||||| ||| | | | |
Sbjct 2108 CTTGCTAATGCTTTGGGTGGTTCTCCGACCAAGAAAAAGAAAATCTCAACAGGGCCCAGA 2167
Query 2427 ----TGAGAAGATC---TATTAAACTTTGAAGAGTTAGCTATTAGAAAAT 2469
||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 2168 CACATGAAAAGATCAACTATTAAACTTTGAAGAGTTAGCTATTAGAAAAT 2217
Score = 309 bits (167), Expect = 7e-83
Identities = 215/238 (90%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 229 TCCGTTCTCGGTTTTGTTGTTAATGGCGGAATTTAGTGACCCACCACCATCTAATCTCTC 288
|||| ||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1 TCCGATCTGGGTTTCGTTGTTAATGGCGGAATTTAGTGACCCACCACCTTCAAATCTCTC 60
Query 289 TTCTTCTCATAAATTAACTAAACCCAACCAAACCCTAGATGAGTCTTCACCAACCGCGCC 348
|||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| ||
Sbjct 61 TTCTTCTCCTAAATTAGCTAAACCCAACCAAACCCTAGATGAGTCCACACCAACCGCTCC 120
Query 349 AATTCGAGACCTTGTTACTAACTCGCTCTCTCTTTCCTCACCGATTCGTCAGATTCAAGC 408
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
Sbjct 121 AATTCGAGACCTTGTTACTCACTCGCTCTCTCTTTCGTCACCGATTCGTCAGATTCAA-C 179
Query 409 CCT-TTCTCCGGCAAAAC-CAGACGGGTCTTCCTCTTCTCCGCCGGACAAAACCCTAA 464
| | ||||||||| || | |||| | |||||||||||||||| | || ||||||||||
Sbjct 180 CTTCTTCTCCGGCGAA-CGCAGATGAGTCTTCCTCTTCTCCGTCAGATAAAACCCTAA 236
> Ahg927290 jgi|Araly1|927290|scaffold_202851.1
Length=385
Score = 152 bits (82), Expect = 1e-35
Identities = 141/169 (83%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 734 GGG-GCTGGGCTATAT-AATTCAGGCAACACTTGTTTCATAGCTTCTGTGTTACAGTGCT 791
||| || ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 43 GGGTGCAGGGCTATATAAATTCAGGCAACACTTGTTTCATAGCTTCTGCGTTGCAGTGCT 102
Query 792 TCACTCATACTGTGCCTCTTATCGATAGTCTTCGTTCATTCATGTATGGAAA-CCCTTGC 850
|||||||||||||||||||| | || || |||| |||| || | | ||| |||||||
Sbjct 103 TCACTCATACTGTGCCTCTTCTTGAGAGCCTTCACTCATACAAATGTC-AAAGCCCTTGC 161
Query 851 AACTGTGGAAATGAGA-AGTTCTGTGTAATGCAAGCTCTTCGAGATCAT 898
||| |||| | |||| | |||||||| ||||| ||||| | |||||||
Sbjct 162 AACCGTGGCAGCGAGACA-TTCTGTGTTATGCATGCTCTCCAAGATCAT 209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97587207690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5