BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46750.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494303 jgi|Araly1|494303|fgenesh2_kg.8__119__AT5G46750.1 2244 0.0
Ahg329738 jgi|Araly1|329738|fgenesh1_pm.C_scaffold_7001965 852 0.0
> Ahg494303 jgi|Araly1|494303|fgenesh2_kg.8__119__AT5G46750.1
Length=1463
Score = 2244 bits (1215), Expect = 0.0
Identities = 1403/1488 (94%), Gaps = 36/1488 (2%)
Strand=Plus/Plus
Query 32 TCTGCTTTGAAGAAGAAGAGTCGATCCATAATCGCCACTTTCAGATTTCCAGATTCTGGG 91
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
Sbjct 1 TCTGCTTTGAAGAAGAAGAG-CGATCCATCGTCACCACTTTCAGATTTCCAGATTCT--G 57
Query 92 GAAACATCTCTAAACTCTTCAACGATGGCGACTGAGAATCTCACCGATAAGAATGTTGTT 151
| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 58 G--------------TCTTCAACGATGGCGACTGAGAAACTCACCGATAAGAATGTTGTT 103
Query 152 TTCAGAAAGCTGAAATCAAAATCCGAGAACAAGGTTTGCTTTGATTGTAGTGCGAAGAAT 211
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 104 TTCAGAAAACTGAAATCAAAATCCGAGAACAAGGTTTGCTTCGATTGTAGTGCGAAGAAT 163
Query 212 CCAACATGGGCTTCTGTTCCTTATGGGATCTTCCTATGCATCGATTGTTCTGCTGTTCAT 271
||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 164 CCAACTTGGGCTTCGGTTCCTTATGGGATCTTTCTATGCATCGATTGTTCAGCTGTTCAT 223
Query 272 CGAAGTCTAGGTGTTCATATCAGCTTCGTCAGGTCAACGAACTTAGACTCGTGGAGTCCT 331
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 224 CGAAGTCTCGGTGTTCATATTAGCTTCGTCAGGTCAACGAACTTAGACTCGTGGAGTCCT 283
Query 332 GAGCAGCTAAGAACAATGATGTTTGGAGGGAACAATCGAGCTCAGGTGTTTTTTAAGCAA 391
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 284 GAGCAGCTAAGAACAATGATGTTTGGTGGGAACAACCGAGCTCAGGTGTTTTTTAAGCAA 343
Query 392 CATGGATGGAATGATGGTGGTAAGATTGAGGCTAAGTATACTTCAAGAGCTGCTGATATG 451
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||
Sbjct 344 CATGGATGGAATGATGGTGGTAAAATTGAGGCCAAGTATACTTCAAGAGCTGCTGATTTG 403
Query 452 TATAGACAGACTCTTGCTAAAGAAGTTGCTAAAGCCATGGCTGAAGAAACTGTTTTACCG 511
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 404 TATAGACAAACACTTGCTAAAGAAGTTGCTAAAGCCATGGCCGAAGAAACTGTTTTACCG 463
Query 512 TCGTTATCCTCTGTTGCTACTTCTCAGCCAGTGGAATCATCTGAAAATGGGTTTACTTCT 571
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TCATTATCCTCTGTTGCTACTTCTCAGCCAGTGGAATCATCTGAAAATGGGTTTACTTCT 523
Query 572 GAATCTCCGAAAGAGAGTTCTTT-G--AAGCAAGAAGCAGCTGTTG--T---C-TCTTCA 622
||||||||||||||||||||||| | |||||||||||| |||||| | | ||||||
Sbjct 524 GAATCTCCGAAAGAGAGTTCTTTGGTTAAGCAAGAAGCAACTGTTGTCTCCACTTCTTCA 583
Query 623 CCAAAAGCTTCTCAGAAAGTTGTTGCTAGTACGTTTAAGAAACCTCTTGTTTCGCGAAAG 682
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 584 CCAAAAGCTTCTCAGAAAGTTGTTGCTAGTACGTTTAAGAAACCCCTTGTGTCGAGAAAG 643
Query 683 TCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGTCAAAGGATAACCTC 742
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 644 ACAGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGCCAAAGGATAACCTC 703
Query 743 TATGAGCAGAAGCCTGAAGAACCTGTACCTGTGATTCCTGCTGCTTCTCCAACCAATGAC 802
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 704 TATGAGCAGAAGCCTGAAGAACCTGTACCTGTGATTCCTGCTGCTTCTTCAACTAACGAC 763
Query 803 ACATCAGCAGCTGGATCATCATTTGCCTCTCGATTTGAGTACTTTGATGATGAGCAATCT 862
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ACATCATCAGCTGGATCATCATTTGCCTCTCGATTTGAGTACTTTGATGATGAGCAATCT 823
Query 863 GGTGGGCAAAGTGGCACACGGGTGCTTAGCCATGTTGCTCCACCAAAGTCATCAAATTTC 922
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 824 GGTGGGCAAAGTGGCACACGAGTGCTTAGTCATGTTGCTCCACCAAAGTCATCGAATTTC 883
Query 923 TTTAATGAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAA 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TTTAATGAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAA 943
Query 983 GCTCAGGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCCAAATCGATTTCC 1042
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 944 GCTCAGGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCTAAATCGATTTCC 1003
Query 1043 TCTGCCCAATTTTTCGGAAATCAGAACAGAGATGCCGATCTTGACTCAAAAGCTACCCTT 1102
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1004 TCTGCCCAATTTTTCGGAAACCAGAACAGAGATGCCGATCTGGACTCAAAAGCTACCCTT 1063
Query 1103 CAGAAGTTCTCGGGTTCAGCAGCTATTTCAAGTTCTGATCTTTTTGGCCACGGACCAGAT 1162
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 CAGAAATTCTCGGGCTCAGCAGCTATTTCAAGTTCTGATCTTTTTGGCCACGGACCAGAT 1123
Query 1163 GATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGGCGCAG 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGGCGCAG 1183
Query 1223 CAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAATAAGCTGGGAACATTT 1282
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1184 CAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAATAAGCTTGGAACATTT 1243
Query 1283 GCCTCTAGTATATTCAGTGATCTTCAGGATAGAATGCTGTAAGAAACATACA-AAGGATC 1341
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1244 GCCTCTAGTATATTCAGTGATCTTCAGGATAGAATGCTGTAAGAAACACACACAA--ATC 1301
Query 1342 TTGTCTTTTGATTTACAGAGAACAAATTGTTGGATATAAATGTCATTTTTATTTTTGGTT 1401
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1302 TTGTCTTTCGATTTACAGAGAACAAATTGTCGGATATAAATGTCATTTTTACTTTTGGTT 1361
Query 1402 TGACTTTGTAGTTGAAAGAGTGATTTTTGAGGTAAATTGTTAAATGTGGAATTTGATAAT 1461
|| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1362 TG--T----AGTTGAAAGAGTGATTTTTGAGGTAAATTGTTAAATGTGGAATTTGATCAT 1415
Query 1462 TTGATGTGGATATGGTAGAATATGTT-ACAGTATTATGTATGGTATTG 1508
||||| |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 1416 TTGATATGGATATGGTAGTATATGTTTACAGTAGTATGTATGGTATTG 1463
> Ahg329738 jgi|Araly1|329738|fgenesh1_pm.C_scaffold_7001965
Length=3249
Score = 852 bits (461), Expect = 0.0
Identities = 991/1239 (80%), Gaps = 68/1239 (5%)
Strand=Plus/Plus
Query 128 AATCTCACCGATAAGAATGTTGTTTTCAGAAAGCTGAAATCAAAATCCGAGAACAAGGTT 187
||||| ||||| || || ||||||||||||| || ||||||||||| |||||||||||
Sbjct 22 AATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAAATCAAAATCTGAGAACAAGGTC 81
Query 188 TGCTTTGATTGTAGTGCGAAGAATCCAACATGGGCTTCTGTTCCTTATGGGATCTTCCTA 247
||||| ||||||||||||||||||||||||||||| || ||| |||||||||| || ||
Sbjct 82 TGCTTCGATTGTAGTGCGAAGAATCCAACATGGGCATCGGTTACTTATGGGATTTTTCTC 141
Query 248 TGCATCGATTGTTCTGCTGTTCATCG-AAGTCTAGGTGTTCATATCAGCTTCGTCAGGTC 306
|||||||||||||| ||| |||||| || ||| ||||||||||||||||||||||| ||
Sbjct 142 TGCATCGATTGTTCAGCTACTCATCGGAA-TCTCGGTGTTCATATCAGCTTCGTCAGATC 200
Query 307 AACGAACTTAGACTCGTGGAGTCCTGAGCAGCTAAGAACAATGATGTTTGGAGGGAACAA 366
|||||| |||||||||||||| ||||||||||| || |||||||||||||| || |||||
Sbjct 201 AACGAATTTAGACTCGTGGAGCCCTGAGCAGCTTAGGACAATGATGTTTGGTGGCAACAA 260
Query 367 TCGAGCTCAGGTGTTTTTTAAGCAACATGGATGGAATGATGGTGGTAAGATTGAGGCTAA 426
|| |||||||||||||| |||||||||||||||| ||||||||| || ||||| || ||
Sbjct 261 CCGCGCTCAGGTGTTTTTCAAGCAACATGGATGGACTGATGGTGGCAAAATTGAAGCCAA 320
Query 427 GTATACTTCAAGAGCTGCTGATATGTATAGACAGACTCTTGCTAAAGAAGTTGCTAAAGC 486
|||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||
Sbjct 321 GTATACTTCAAGAGCTGCTGATTTGTATAGGCAGATTCTTGCTAAGGAAGTTGCTAAAGC 380
Query 487 CATGGCTGAAGA-A--A---CTGTTTTACCGTCGTTATCCTCTGTTGCTACTTCTCAGCC 540
|| || ||||| | | ||| ||||| ||| | ||| |||||||||||||||
Sbjct 381 GATTGCAGAAGATACGAATTCTGGTTTACTGTCATC-TCCA--GTTGCTACTTCTCAGTT 437
Query 541 AGTGGAA-TCATCTGAAAATGGGTTTACTTCTGAATCTC-CGAAAGA-GAGTT-C-T--T 593
| |||| | |||| || ||||| ||||| | ||| | || || ||||| | | |
Sbjct 438 ACCGGAAGT-ATCT-AATGGGGGTT--CTTCTTATTCTGTC-AAGGAAGAGTTACCTCCT 492
Query 594 --TGAAGCAAGAAGCAGCTGTTGTC--T-CTTCACCAAAAGCTTCTCAGAAAGTTGTTGC 648
| || | |||| ||| || | | |||| || | ||||||| | | |||||| ||
Sbjct 493 CCTAAAT-ATGAAGGTGCTACTGCCACTTCTTCGCCTAGAGCTTCTAATACAGTTGT-GC 550
Query 649 -TAGTACGTTTAAGAAACCTCTTGTTTCGCGAAA-GT-CTGGGAAGACTGGTGGTCTTGG 705
||||||||||||||||||| | | | || ||| | | || || ||||||||||||||
Sbjct 551 CTAGTACGTTTAAGAAACCTATCGGT--GCTAAAAGGACAGGCAAAACTGGTGGTCTTGG 608
Query 706 TGCTCGTAAGCTTACTACTAAGTCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAACC 765
||| | ||||||||||| ||| ||||||| || ||||||||||| || || ||||||
Sbjct 609 TGCGAGGAAGCTTACTACCAAGCCAAAGGACAATCTCTATGAGCAAAAACCGGAAGAAGT 668
Query 766 TGTACCTGTGATTCCTGCTGCTTC-TC--CAACCAATG-ACA---CA--TCAGCAGCTGG 816
|| ||| || ||||| ||||| || || ||| |||| | | || ||| |||||||
Sbjct 669 TGCACCGGTTATTCCGGCTGCATCATCAACAAATAATGGAGAAAGCAAATCATCAGCTGG 728
Query 817 ATCATCATTTGCCTCTCGATTTGAGTACTTTGATGA-TGAGCAATCTGGTGGGCAAAG-- 873
||||| ||||||||||| ||||||||| ||| || | ||||||||| || |||||
Sbjct 729 TTCATCGTTTGCCTCTCGGTTTGAGTACAATGACGACTT-GCAATCTGGAGGACAAAGCG 787
Query 874 T-GGC---ACACGGGTGCTTAGCCATGTTGCTCCACCAAAGTCATCAAATTTCTTTAATG 929
| || |||| ||||||| ||||||||||||||||||||| |||| |||||| |
Sbjct 788 TTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCAAGCTTCTTTTCGG 847
Query 930 AATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTC-AAGCTCATCCAAAGCTCAG 988
| ||||||||||||||| |||| |||||||| |||||||| || ||| || ||| ||||
Sbjct 848 ATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAA-CTCGTCAAAATCTCAA 906
Query 989 GTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCCAAA-TCGATTTCCTCTGC 1047
||||||||| |||||||||||||||||||||| ||||||| ||| || || || || ||
Sbjct 907 GTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGC-AAAGTCCATATCTTCAGC 965
Query 1048 CCAATT-TTTCGGAAATCAGAACAGAGATGCCGATCTTGACTCAAAAGCTACCCTTCAGA 1106
|| | ||| || | |||||||| | | || ||| | || ||||||||||| |||||||
Sbjct 966 TCAGTACTTTGGGGA-TCAGAACAAAAACGCTGATATGGAATCAAAAGCTACTCTTCAGA 1024
Query 1107 AGTTCT-CGGGTTCAGCAGCTATTTCAAGTTCTGATCTTTTT-GGCCACGGACCA-GATG 1163
|||| | | || |||||| |||| ||||| ||||| |||| || |||| |||| ||||
Sbjct 1025 AGTT-TGCAGGCTCAGCATCTATCTCAAGCGCTGAT-TTTTACGGTCACG-ACCAAGATG 1081
Query 1164 ATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGGCGCAGC 1223
||||||| || ||||| || || || |||||||| |||||| |||||||||||||||| |
Sbjct 1082 ATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTTCTTTCCAGGCGCAAC 1141
Query 1224 AAGATATGTCATCTATTGCT-AACTTAGCTGAGGAAACAAAGAATAAGCTGGGAACATTT 1282
||||||| || || ||| | ||| |||| | |||||||||||| ||||| ||||| |||
Sbjct 1142 AAGATATATCGTCC-TTGGTGAACATAGCAGGGGAAACAAAGAAGAAGCTTGGAAC-TTT 1199
Query 1283 GCCT-CTAGTATATTCAGTGATCTTCAGGATAGAATGCT 1320
| || || |||| ||||||||| |||| || ||||||||
Sbjct 1200 GGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCT 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5