BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46760.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948265 jgi|Araly1|948265|scaffold_800152.1 1472 0.0
Ahg493087 jgi|Araly1|493087|fgenesh2_kg.7__2520__AT4G17880.1 484 7e-136
> Ahg948265 jgi|Araly1|948265|scaffold_800152.1
Length=1986
Score = 1472 bits (797), Expect = 0.0
Identities = 932/994 (94%), Gaps = 21/994 (2%)
Strand=Plus/Plus
Query 1 ATGAACGGCACAACATCATCAATCAACTTCTTGACCTCCGACGATGACGCGTCGGCGGCG 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 21 ATGAACGGCACAACATCATCAATCAACTTCTTAACCTCCGACGATGACGCGT---CGGCG 77
Query 61 GCTATGGAAGCTTTCATTGGAACAAACCACCACTCATCTCTCTTTCCTCCACCACCAC-A 119
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 78 GCTATGGAAGCTTTCATCGGAACAAACCACCACTCATCTCTCTTTCCTCCACCACCACAA 137
Query 120 --A-CA--ACCA---------CCTCAGCCTCAGTTCAACGAAGATACTCTTCAACAACGT 165
| || |||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 138 CCACCACCACCACCTTCTTTTCCTCAAACTCAATTCAACGAAGATACTCTTCAACAACGT 197
Query 166 CTCCAAGCTTTAATAGAATCCGCCGGAGAAAACTGGACTTACGCTATCTTCTGGCAGATC 225
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CTCCAAGCTTTAATCGAATCCGCCGGAGAAAACTGGACTTACGCTATCTTCTGGCAGATC 257
Query 226 TCACACGACTTCGATTCATCCACCGGAGATAACACAGTGATCCTCGGCTGGGGAGATGGT 285
||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct 258 TCACACGACTTCGATTCTTCCACCGGAGACAACACTGTAATCCTCGGCTGGGGAGATGGA 317
Query 286 TACTACAAAGGAGAGGAAGATAAAGAGAAGAAGAAGAACAACACCAACACGGCGGAGCAA 345
|||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 318 TACTACAAAGGAGAAGAAGACAAAGAGAAGAAGAAGAACAACGCGAACACGGCGGAGCAA 377
Query 346 GAGCATCGGAAAAGAGTAATACGTGAGCTTAACTCGTTAATCTCCGGCGGAATTGGGGTT 405
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 378 GAGCACCGGAAAAGAGTAATCCGTGAGCTTAATTCGTTAATCTCCGGCGGAATTGGAGTT 437
Query 406 TCCGATGAATCAAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATG 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TCCGATGAATCAAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATG 497
Query 466 ACTCAAAGCTTCGTTAACGGTGTTGGTCTCCCCGGAGAATCTTTCTTAAACTCTCGTGTG 525
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 498 ACTCAAAGCTTCGTTAACGGTGTTGGACTTCCCGGAGAATCTTTCTTAAACTCTCGTGTG 557
Query 526 ATTTGGTTATCCGGGTCTGGTGCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGT 585
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 558 ATTTGGTTATCTGGGTCGGGTTCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGT 617
Query 586 CAGATTTACGGGTTAAAGACGATGGTGTGTATCGCGACTCAAAACGGCGTCGTTGAGCTT 645
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 618 CAGATTTACGGGTTGAAGACGATGGTGTGTATCGCGACGCAAAACGGCGTCGTTGAGCTT 677
Query 646 GGTTCGTCGGAGGTTATAAGTCAAAGCTCAGATCTGATGCATAAAGTTAACAACTTGTTT 705
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 678 GGTTCGTCGGAAGTTATAAGTCAAAGCTCAGATCTGATGGATAAAGTTAATAACTTGTTT 737
Query 706 AATTTCAACAACGGT-G--GTGGAAACAATGGTGTTGAAGCTTCTTCGTGGGGTTTTAAT 762
|| |||||||||||| | |||| |||||||||| |||||||||||| ||||||||||||
Sbjct 738 AACTTCAACAACGGTGGTAGTGGTAACAATGGTGGTGAAGCTTCTTCTTGGGGTTTTAAT 797
Query 763 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACCGACGAACACC 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACCGACGAACACC 857
Query 823 GGAATCGAATCTCCGGCGAGGGTTAATAATGGTAATAACTCGAATTCTAATTCTAAGTCT 882
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 858 GGAATCGAATCTCCGGCGAGGGTTAGTAATGGTAATAACTCGAATTCGAATTCTAAGTCT 917
Query 883 GATTCTCATCAAATTTCTAAGCTTGAGAAGAATGATATTAGCTCTGTAGAGAATCAGAAT 942
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 918 GATTCTCATCAAATTTCGAAGCTTGATAAGAATGATATTAGCTCTGTGGAGAATCAGAAT 977
Query 943 CGTCAAAGTTCGTGTCTTGTCGAGAAAGATTTGA 976
||||||||||| |||||||| |||| ||||||||
Sbjct 978 CGTCAAAGTTCTTGTCTTGTTGAGAGAGATTTGA 1011
Score = 1249 bits (676), Expect = 0.0
Identities = 765/808 (95%), Gaps = 6/808 (1%)
Strand=Plus/Plus
Query 978 CTTTCAAGGTGGGTTGTTGAAATCTAATGAGACTTTGAGTTTCTGTGGTAATGAGAGTAG 1037
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1046 CTTTCAAGGTGGGTTGTTGAAATCGAATGAGACTTTGAGTTTCTGTGGTAACGAGAGTAG 1105
Query 1038 TAAGAAGAGAACTTCGGTATCTAAAGGGAGTAATAATGATGAAGGGATGCTTTCGTTTAG 1097
|||||||| || |||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1106 CAAGAAGAGGTCTCCGGTTTCGAAAGGGAGTAATAATGATGAAGGGATGCTTTCTTTTAG 1165
Query 1098 TACTGTGGTTAGATCAGCTGCG-AA-----TGATTCGGATCATTCTGATCTTGAAGCATC 1151
|||||||||| |||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 1166 TACTGTGGTTCGATCCGCTGCGAAATCGGTTGATTCGGATCATTCTGATCTTGAAGCATC 1225
Query 1152 TGTTGTTAAGGAAGCGATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAG 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 GGTTGTTAAGGAAGCGATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAG 1285
Query 1212 GAAACCGGCGAATGGgagagaagagccgttgaatcatgttgaagcagagaggcagagaag 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 GAAACCGGCGAATGGGAGAGAAGAGCCGTTGAATCATGTTGAAGCAGAGAGGCAGAGAAG 1345
Query 1272 agagaagttaaaccagagaTTCTACTCTTTGAGAGCTGTTGTTCCTAACGTTTCGAAGAT 1331
||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 1346 AGAGAAGTTAAACCAGAGATTTTATTCTTTGAGAGCTGTGGTTCCTAATGTTTCGAAGAT 1405
Query 1332 GGATAAAGCTTCGCTTCTCGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCGAAGCT 1391
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1406 GGATAAAGCTTCTCTTCTCGGAGATGCTATTTCGTATATCAATGAGCTTAAGTCGAAGCT 1465
Query 1392 GCAGCAAGCGGAGTCTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGTAAGGA 1451
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GCAACAAGCGGAATCTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGTAAGGA 1525
Query 1452 AGGGAATAATGGGAAAGGTTGCGGGTCAAGGGCAAAAGAACGGAAAAGTTCGAATCAAGA 1511
||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1526 AGGAAATAATGGGAAAGGTGGCGGGTCGAGGGCGAAAGAACGGAAAAGTTCGAATCAAGA 1585
Query 1512 TTCTACGGCGAGTTCTATAGAAATGGAGATTGATGTTAAGATCATAGGTTGGGATGTGAT 1571
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1586 TTCTACGGCGAGTTCTATAGAAATGGAGATTGATGTGAAGATCATAGGTTGGGATGTGAT 1645
Query 1572 GATACGTGTACAATGCGGCAAGAAAGATCATCCCGGTGCTAGGTTCATGGAAGCACTTAA 1631
|||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 1646 GATACGTGTACAATGCAGCAAGAAGGATCATCCCGGTGCTAGATTCATGGAAGCGCTCAA 1705
Query 1632 GGAATTGGATTTGGAAGTGAATCATGCGAGTTTATCCGTTGTGAATGATTTGATGATTCA 1691
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1706 GGAACTGGATTTGGAAGTGAATCACGCGAGTTTATCCGTTGTGAATGATTTGATGATTCA 1765
Query 1692 ACAAGCTACGGTGAAGATGGGGAGCCAATTTTTCAATCATGACCAGCTCAAAGTTGCTTT 1751
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1766 ACAAGCTACCGTGAAGATGGGGAGCCAGTTTTTCAATCATGACCAGCTTAAAGTTGCTTT 1825
Query 1752 GATGACGAAAGTCGGAGAAAACTATTGA 1779
|||||||||||||||||||||||||||
Sbjct 1826 AATGACGAAAGTCGGAGAAAACTATTGA 1853
> Ahg493087 jgi|Araly1|493087|fgenesh2_kg.7__2520__AT4G17880.1
Length=2103
Score = 484 bits (262), Expect = 7e-136
Identities = 502/613 (82%), Gaps = 35/613 (6%)
Strand=Plus/Plus
Query 1168 ATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAGGAAACCGGCGAATGGg 1227
||||| ||||| |||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1293 ATTGTGGTTGA---ACCGGAGAAGAAACCGAGGAAACGAGGGAGAAAACCGGCGAATGGA 1349
Query 1228 agagaagagccgttgaatcatgttgaagcagagaggcagagaagagagaagttaaaccag 1287
||||||||||| ||||||||||| || |||||||| ||||||||||||||||| || |||
Sbjct 1350 AGAGAAGAGCCTTTGAATCATGTAGAGGCAGAGAGACAGAGAAGAGAGAAGTTGAATCAG 1409
Query 1288 agaTTCTACTCTTTGAGAGCTGTTGTTCCTAACGTTTCGAAGATGGATAAAGCTTCGCTT 1347
||||| ||||||||||||||||| |||||||| || || ||||||||||||||||| |||
Sbjct 1410 AGATTTTACTCTTTGAGAGCTGTGGTTCCTAATGTGTCTAAGATGGATAAAGCTTCTCTT 1469
Query 1348 CTCGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCGAAGCTGC-AGCAAG-CGGAGT 1405
| ||||||||||||||||||||||||||||||||||| ||| ||| | ||| | || |
Sbjct 1470 TTAGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCTAAGTTGCTA--AAGGCTGAAT 1527
Query 1406 CTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGT-AAGGAAG-GGAATAATGG 1463
|||||||||| ||| | |||||| || | |||||||||| | || || | || |||
Sbjct 1528 CTGATAAAGAAGAGCTGCAGAAGCAGATTGATGGGATGA-TCAAAGAGGCGGGG-AATTC 1585
Query 1464 GAAAGGTTGCGGGTCAAGGGCAAAAGAACGGAAAA-GTTCGAATCAAGATTCTACGGCGA 1522
|||| ||| ||| | || | || || |||| ||| || |||||| || || |
Sbjct 1586 GAAAAGTT-CGGTT-AA----A---GATCG-AAAATGTTTGATTCAAGAATCG--GGTGT 1633
Query 1523 GTTCTATAGAAATGGAGATTGATGTTAAGATCATAGGTTGGGATGTGATGATACGTG-TA 1581
| | ||||| |||||| ||||||| ||||| || |||||||||| |||||| | | |
Sbjct 1634 GGTG-ATAGAGATGGAGGTTGATGTGAAGATTATTGGTTGGGATGCAATGATAAG-GATT 1691
Query 1582 CAATGCGGCAAGA-AAGATCATCCCGGTGCTAGGTTCATGGAAGCACTTAAGGAATTGGA 1640
|||||| | |||| || ||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 1692 CAATGCAGTAAGAGAA-ATCATCCTGGTGCTAAATTCATGGAAGCACTCAAGGAATTGGA 1750
Query 1641 TTTGGAAGTGAATCATGCGAGTTTATCCGTTGTGAATGAT-TTGATGATTCAACAAGCTA 1699
||||||||||||||||||||||||||| || ||||||||| || ||||| |||||||| |
Sbjct 1751 TTTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTT-ATGATCCAACAAGCGA 1809
Query 1700 CGGTGAAGATGGGGAGCCAATTTTTCA-ATCATGACCAGCTCAAAGTTGCTTTGATG-AC 1757
| ||||| ||||||| || ||||||| | || || |||||||| |||||| | ||| |
Sbjct 1810 CTGTGAAAATGGGGAATCAGTTTTTCACA-CAAGATCAGCTCAAGGTTGCTCTAATGGAT 1868
Query 1758 GAAAGTCGGAGAA 1770
||||||||||||
Sbjct 1869 -AAAGTCGGAGAA 1880
Score = 294 bits (159), Expect = 1e-78
Identities = 445/577 (77%), Gaps = 44/577 (8%)
Strand=Plus/Plus
Query 274 TGGGGAGATGGTTACTACAAAGGAGAGGAAGATAAA--GAG-AAGAAGAAGAACAACA-C 329
|||||||||||||| ||||||||||| ||||| ||| || |||||||| | ||| | |
Sbjct 414 TGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAATCTAGAAAGAAGAA-ACCAA-ATC 471
Query 330 CAAC-AC-G--GCGGAGCAAGAGCATCGGAAAAGAGTAATACGTGAGCTTAACTCGTTAA 385
|| | | | || || ||||||||||| || ||||| ||||| || || ||||| ||||
Sbjct 472 CAGCTTCTGCAGCTGAACAAGAGCATCGTAAGAGAGTGATACGAGAACTCAACTCTTTAA 531
Query 386 TCTCCGGCGG-AATTG-GG-GTTTCCGATGAATC-AAACGATGAAGAAGTAACAGATACT 441
||||||| || | | || | |||||| | | ||||||||||| |||||||||
Sbjct 532 TCTCCGGTGGTGGTGGAGGAGGAGGAGATGAAGCTGGA-GATGAAGAAGTTACAGATACT 590
Query 442 GAATGGTTCTTCTTAGTTTCGATGACTCAAAGCTTCGTTAACGGTGTTGGTCTCCCCGGA 501
|||||||||||||||||||| ||||| || ||||| || || || |||| | || ||
Sbjct 591 GAATGGTTCTTCTTAGTTTCAATGACACAGAGCTTTGTCAATGGCACTGGTTTACCTGGT 650
Query 502 GAATCTTTCTTAAACTCTCGTGTGATTTGG-TTATCCGGGTCTGGTGCTTTAACCGGGTC 560
|| |||||| ||||| ||||||| || || |||||| ||||||| | || ||
Sbjct 651 CAAGCTTTCTCGAACTCGAACACGATTTGGCTT-TCTGGGTCTAATGCTTTAGCTGGATC 709
Query 561 GGGTTGTGAAAGAGCGGGTCAAGGTCAGATTTACGGGTTA-AAGACGATGGTGTGTATCG 619
||||||| ||||| |||||||||||||||| |||||| || || ||||||||| | |
Sbjct 710 AAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAA-ACAATGGTGTGTGTAG 768
Query 620 CGACTCAAAACGGCGTCGTTGAGCTTGGTTCGTCGGAGGTTATA-AGTCAAAGCTCAGAT 678
||||| | ||||| |||||||||||||||||||||||| ||||| | |||||| ||||||
Sbjct 769 CGACTGAGAACGGTGTCGTTGAGCTTGGTTCGTCGGAGATTATACA-TCAAAGTTCAGAT 827
Query 679 CT-GATGCATAAAGTTAACAACTTGTTTAATTTCAACAACGGTGGTGGAAACAATGGTGT 737
|| | || |||||||| ||| ||| ||| |||| |||||||| | | | ||
Sbjct 828 CTTGTTG-ATAAAGTTGACACCTT-TTT-----CAAC---GGTGGTGGTGA-A-TC-TG- 873
Query 738 TGAAGCTTCTTCGTGGGGTTTTAATCTGAATCCAGATCAAGGAGAGAATGATCCAGCTTT 797
| ||||| | || |||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 874 -G----TTCTT-G-GGCGTTT-AATTTGAATCCAGATCAAGGAGAGAATGATCCAGGTTT 925
Query 798 GTGGATTAGTGAACCGACGAACACCGGAATCGAATCT 834
||||||||||||||| | ||||| || | ||||||
Sbjct 926 GTGGATTAGTGAACCTAATAACACTGGTGTTGAATCT 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5