BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46770.1

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948264 jgi|Araly1|948264|scaffold_800151.1                        689    0.0  


> Ahg948264 jgi|Araly1|948264|scaffold_800151.1
Length=442

 Score =  689 bits (373),  Expect = 0.0
 Identities = 420/442 (95%), Gaps = 5/442 (1%)
 Strand=Plus/Plus

Query  67   AAGGAGATCGCAAAAAAGCCATGAGCCTAAATTGTCTATCATGTCAAGCCCTTCCACGAA  126
            |||||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    AAGGAGATCATAAAAAGGCCATGAGCCTAAATTGTCTAACATGTCAAGCCCTTCCACGAA  60

Query  127  CAGATTCCAACAAAGATGTTGATCTCTCCGGTCCTGGACCACCAAGGGTCGAGATTAACA  186
            |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  61   CAGATTCCAACAAAAATGTTGATCTCTCCGGTCCTGGACCACCAAAGGTCGAGATTAACC  120

Query  187  ATGTTCTAGGTAAAACATGTTGTGTAAATCCTATTGGTGGGAGAAATTGGTCAGGGAATT  246
            |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct  121  ATGTTCTAGGTAAAACATGTTGTGTAGATCCTATTGGTGGAAGAAATTGGTCAGGGAATT  180

Query  247  TGAGTCCTAGGATCTATGAGAAGATTGGACGGCCAGGATCGTCTTTAGCGCATAAGATGA  306
            |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct  181  TGAGTCCTAGGATCTATGAGAAGATTGGACGGTCAGGATCGTCTTTAGCCCATAAGATGA  240

Query  307  AGAAGGTGAAAAAGATTCATCACGTTAGGCTAAGTGGTCCTGTTGGTTCTAGCCCTAGCA  366
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  241  AGAAGGTGAAAAAGATTCATCACATTAGGCTAAGTGGTCCTGTTGGTGCTAGCCCTAGCA  300

Query  367  ATGTACCAACCCGGCCGGAACAACCAAAGCTCGTAAGGAGCACTGGAGTCCGAAGGAATT  426
            ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  301  ATGGACCGACCCGGCCCGAACAACCAAAGCTTGTAAGGAGCACTGGAGTCCGAAGGAATT  360

Query  427  GGAGTTTTGAGAATTTGAGAGATCAAGGATTAATAGAAGAAAAAAGGAAGATTAACATAT  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GGAGTTTTGAGAATTTGAGAGATCAAGGATTAATAGAAGAAAAAAGGAAGATTAACATAT  420

Query  487  GAAT-AT-AT-GATCAATGATT  505
            || | || || ||||| |||||
Sbjct  421  GA-TCATGATTGATCA-TGATT  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27753483576


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5