BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46770.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg948264 jgi|Araly1|948264|scaffold_800151.1 689 0.0 > Ahg948264 jgi|Araly1|948264|scaffold_800151.1 Length=442 Score = 689 bits (373), Expect = 0.0 Identities = 420/442 (95%), Gaps = 5/442 (1%) Strand=Plus/Plus Query 67 AAGGAGATCGCAAAAAAGCCATGAGCCTAAATTGTCTATCATGTCAAGCCCTTCCACGAA 126 ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 AAGGAGATCATAAAAAGGCCATGAGCCTAAATTGTCTAACATGTCAAGCCCTTCCACGAA 60 Query 127 CAGATTCCAACAAAGATGTTGATCTCTCCGGTCCTGGACCACCAAGGGTCGAGATTAACA 186 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 CAGATTCCAACAAAAATGTTGATCTCTCCGGTCCTGGACCACCAAAGGTCGAGATTAACC 120 Query 187 ATGTTCTAGGTAAAACATGTTGTGTAAATCCTATTGGTGGGAGAAATTGGTCAGGGAATT 246 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 121 ATGTTCTAGGTAAAACATGTTGTGTAGATCCTATTGGTGGAAGAAATTGGTCAGGGAATT 180 Query 247 TGAGTCCTAGGATCTATGAGAAGATTGGACGGCCAGGATCGTCTTTAGCGCATAAGATGA 306 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 181 TGAGTCCTAGGATCTATGAGAAGATTGGACGGTCAGGATCGTCTTTAGCCCATAAGATGA 240 Query 307 AGAAGGTGAAAAAGATTCATCACGTTAGGCTAAGTGGTCCTGTTGGTTCTAGCCCTAGCA 366 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 241 AGAAGGTGAAAAAGATTCATCACATTAGGCTAAGTGGTCCTGTTGGTGCTAGCCCTAGCA 300 Query 367 ATGTACCAACCCGGCCGGAACAACCAAAGCTCGTAAGGAGCACTGGAGTCCGAAGGAATT 426 ||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 301 ATGGACCGACCCGGCCCGAACAACCAAAGCTTGTAAGGAGCACTGGAGTCCGAAGGAATT 360 Query 427 GGAGTTTTGAGAATTTGAGAGATCAAGGATTAATAGAAGAAAAAAGGAAGATTAACATAT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GGAGTTTTGAGAATTTGAGAGATCAAGGATTAATAGAAGAAAAAAGGAAGATTAACATAT 420 Query 487 GAAT-AT-AT-GATCAATGATT 505 || | || || ||||| ||||| Sbjct 421 GA-TCATGATTGATCA-TGATT 440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5