BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46780.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948263 jgi|Araly1|948263|scaffold_800150.1 1064 0.0
> Ahg948263 jgi|Araly1|948263|scaffold_800150.1
Length=749
Score = 1064 bits (576), Expect = 0.0
Identities = 705/765 (92%), Gaps = 18/765 (2%)
Strand=Plus/Plus
Query 169 TTTTGTTTGTTTGTTTCAGTTTtaataatggatgatcagagtaatcgtggtaatgataat 228
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 1 TTTTGTTTGTTTGTTTCAGGTTTAATAATGGATGATCAGAGAAATCGTGTTAATGATTAT 60
Query 229 cataataatgatcatcatcatcatcatcTTGGTGTGAATAAGATGGGAAAAAACATTCGT 288
||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||
Sbjct 61 CATAATAATGATCATCATCAT--T-ATCTAGGTGTGAATAAGATGGGAAAAAACATCCGT 117
Query 289 AAAGATCCACcaaaccaacaaaatcaacaacaaaaccctcaagctttggtttacaacatc 348
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 AAAGATCCATCAAACCAGCAAAATCAACAGCAAAACCCTCAAGCTTTGGTTTACAACATC 177
Query 349 aacaaaacCGATTTCAGATCCATTGTTCAGCAGCTAACCGGACTCGGTTCAACTTCTTCC 408
||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||
Sbjct 178 AACAAAACCGATTTCAGATCCATTGTTCAACAGTTAACCGGACTTGGTTCATCTTCTTCA 237
Query 409 GTCAATCCTCCGCAAACAAA-CCATCCAAAACCTCCAAATTCACGGTTGGTTAAAGTTAG 467
||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GTCAATCCTCCGCAAGCAAACCCA-CCAAAACCTCCAAATTCACGGTTGGTTAAAGTTAG 296
Query 468 ACCGGCTCCTTTGACCCAACTCAACCATCCTCCACCTCCACCTCCACCTCCACCGCCGGT 527
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 297 ACCGGCTCCTTTGACCCAACTCAACCATCCTCCACCTCCACCTCCACCTCC---G--G-T 350
Query 528 TCAATCAGTTCCAATTGCATCTGAACCGGTTCAGCCTGTTAACCAATTTTCGAGT-AACC 586
|||||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 351 TCAATCGGTTCCAATTGCATCTGAACCGGTTCAGCCTGTTAACCAAGTTTCG-GTTAACC 409
Query 587 CGGCTGAATCTCCCATCTCGGCCTATATGCGTTACCTAATCGAATCAAGCCCTGTCGGAA 646
|||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 410 CGGCCGAATCTCCCATCTCCGCTTATATGCGTTACCTAATCGAATCAAGCCCTGTTGGAA 469
Query 647 ACCGAGTGCAGCCACAAAACCAAAACCCGGTTCAACCATCAACCGGTTTATTTCAGTCAC 706
|||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 470 ACCGAGCGCAGCCACAAAACCAAAATCCGGTTCAACCATCAACCGGTTTATTTCCTTCAC 529
Query 707 ATCAAACCGGTCCTAATCCAATGTCGTTCCAGTCTCCAGCTTCACAGTTTGCTTTGTCAC 766
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 530 ATCAAACCGGTCCTAATCCAATGTCATTCCAGTCTCCAGCTTCACAGTTTGTTTTGTCAC 589
Query 767 CGCAGCCAAGATCACCATTTCCTTTGTTCTCACCCAATTTTGCATTTTCACCTCGGTTTT 826
||||||||||||| |||||||| ||||||||||||||||| || || || || |||||||
Sbjct 590 CGCAGCCAAGATCGCCATTTCCATTGTTCTCACCCAATTTCGCGTTCTCGCCGCGGTTTT 649
Query 827 TAGGCGGTAGTAACGAATCGCTACCACCGCCATCACCGGGTTTTTTCTTTCCATTGCTTA 886
||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct 650 TAGGCGGTAC---CGAATCGCTGCCACCGCCATCACCCGGTTTTTTCTTCCCATTGCTCA 706
Query 887 GTCCATTATGGAAAAATCAATAGTTGAATATAGTAGCAGTGTATT 931
||||||||||||||||||||||| | ||| |||||| ||| ||||
Sbjct 707 GTCCATTATGGAAAAATCAATAGCT-AAT-TAGTAGTAGTATATT 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5