BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46790.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494299 jgi|Araly1|494299|fgenesh2_kg.8__115__AT5G46790.1 926 0.0
> Ahg494299 jgi|Araly1|494299|fgenesh2_kg.8__115__AT5G46790.1
Length=800
Score = 926 bits (501), Expect = 0.0
Identities = 714/811 (88%), Gaps = 37/811 (5%)
Strand=Plus/Plus
Query 28 ATCAATGGCGAATTCAGAGTCCTC-CTCCTCACCAGTAAACGAAGAAGAGAACAGCCAGA 86
|||||||||||||||||||||||| | | | || || ||||||||||||| |||||
Sbjct 1 ATCAATGGCGAATTCAGAGTCCTCACAAGT-A--AGCGAA-GAAGAAGAGAACAACCAGA 56
Query 87 GAATCTCAACACTCCATCACCAAACCATGCCTTCCGATTTAACTCAAGACGAATTCACC- 145
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 57 GAATCTCAACACTCCATCACCAAACGATGCCTTCCGAGTTAACTCAAGACGAATTCACCT 116
Query 146 CAACTCTCCCAATCAATCGCCGAGTTCCACACGTACCAACTCGGTAACGGCCGTTGCTCA 205
| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 117 C-ACTCTCCCAATCAATCGCCGAGTTCCACACATACCAACTCGGTCACGGCCGTTGCTCA 175
Query 206 TCTCTCCTAGCTCAGCGAATCCACGCGCCGCCGGAAACAGTATGGTCCGTGGTGAGACGT 265
|||||| ||||||| || ||||||||||||||||||||||| |||||||| |||||| |
Sbjct 176 TCTCTCTTAGCTCAACGGATCCACGCGCCGCCGGAAACAGTCTGGTCCGTCGTGAGAAGA 235
Query 266 TTCGATAGGCCACAGATTTACAAACACTTCATCAAAAGCTGTAACGTG-AGTGAAGATTT 324
||||| || ||||||||||||||||||||||||||||||||| |||| || |||| |||
Sbjct 236 TTCGACAGACCACAGATTTACAAACACTTCATCAAAAGCTGTTTCGTGAAG-GAAGGTTT 294
Query 325 CGAGATGCGAGTGGGATGCACGCGCGACGTGAACGTGATAAGTGGATTACCGGCGAATAC 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CGAGATGCGAGTGGGATGCACGCGCGACGTGAACGTGATAAGTGGATTACCGGCGAATAC 354
Query 385 GTCTCGAGAGAGATTAGATCTGTTGGACGATGATCGGAGAGTGACTGGGTTTAGTATAAC 444
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 ATCGAGAGAGAGATTAGATCTGTTGGACGATGATCGGAGAGTGACTGGGTTTAGTATCAC 414
Query 445 CGGTGGTGAACATAGGCTGAGGAATTATAAATCGGTTACGACGGTTCATAGATTTGagaa 504
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 415 CGGTGGTGAACATAGGCTGAGGAATTATAAATCGGTGACGACGGTTCATAGATTTGAGAA 474
Query 505 agaagaagaagaagaaagGATCTGGACCGTTGTTTTGGAATCTTATGTTGTTGATGTACC 564
|||||| | || |||||||||||||||||||||| || ||||||||||||||
Sbjct 475 AGAAGATC--G--GA-----TCTGGACCGTTGTTTTGGAATCGTACGTTGTTGATGTACC 525
Query 565 GGAAGGTAATTCGGAGGAAGATACGAGATTGTTTGCTGATACGGTTATTAGATTGAATCT 624
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 526 GGAAGGTAATTCGGAGGAAGATACGAGATTGTTTGCAGATACGGTTATTAGATTGAATCT 585
Query 625 TCAGAAACTTGCTTCGATCACTGAAGCTATGAACCGGaacaacaacaacaacaacTCTTC 684
|||||||||||| |||||||||||||||||||| ||||||||||||||| | | |
Sbjct 586 TCAGAAACTTGCGTCGATCACTGAAGCTATGAATCGGAACAACAACAACG-C--CGGTGA 642
Query 685 TCAGGTTAGGTAATGATGAAAT-TTGGGGGAAAGAAAAATGTTTCTAAA-TTGGGGGAGt 742
| || ||| || || || | || | || | |||| |||||||| |
Sbjct 643 -C-GG--AGG-AA-GA--AACTCTTCTTCTTCTCAGG--TGATG-TAAAATTGGGGGATT 691
Query 743 tttaatttttattttgatttgtaaaacgttttttttcttct-cttgaattgtaatttcct 801
||||||||| |||||||||||||| | ||||||||| || | ||||||||||||||||||
Sbjct 692 TTTAATTTT-ATTTTGATTTGTAATATGTTTTTTTTTTTTTTCTTGAATTGTAATTTCCT 750
Query 802 tgtttgattttatggttatgttttatttttt 832
||||||||| ||||||||||||| ||||||
Sbjct 751 CGTTTGATTT-ATGGTTATGTTTTTTTTTTT 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5