BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46795.1
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494298 jgi|Araly1|494298|fgenesh2_kg.8__114__AT5G46795.1 1014 0.0
> Ahg494298 jgi|Araly1|494298|fgenesh2_kg.8__114__AT5G46795.1
Length=674
Score = 1014 bits (549), Expect = 0.0
Identities = 635/674 (94%), Gaps = 15/674 (2%)
Strand=Plus/Plus
Query 17 aaTAACAAGTCTTATGGAGACGATTGAGCAACAAAAACATTCACTCTCTTCTTTGCCTAT 76
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AATCACAAGTCTTATGGAGACGATTGAGCAACAAAGACATTCACTCTCTTCTTTGCCTAT 60
Query 77 GCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAATCTAGAGAGACAACAAAACCT 136
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAACCTAGAGAGACAACAAAACCT 120
Query 137 TCCGA-----AA-TGGAAAGACGAAAGCGCGCCTACCACGCGTGGGTTAATCGATAGAGG 190
||||| || |||||||| ||||||||| ||||||| ||||| ||||||||||||||
Sbjct 121 TCCGATTCCGAAATGGAAAGAGGAAAGCGCGTCTACCACACGTGGATTAATCGATAGAGG 180
Query 191 CACGGCGATTAGAGAAGCGTATTTCAAAGGATCGTTACTAGATCGAATCGCGGCTTTGGA 250
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 CACGGCGATTAGAGAAGCGTATTTCAAAGGATCATTACTAGATCGAATCGCGGCTTTGGA 240
Query 251 GACCAGACTTTTTCAGATATGTTTGGAGTTGGAATCGAGCAGTGGATCTTCTACTTCAAC 310
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 241 GACCAGACTTTTTCAGATATGTTTGGAATTGGAATCGAGCAGTGCATCTTCTACTTCAAC 300
Query 311 TGGAGGGTCTGGTGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACC 370
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGAGGGTCCGGAGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACC 360
Query 371 CATTTTCAGTAGCAACATTAATCCTTTTCATGTCCCCTTACAACATCCACAAGACCTTCG 430
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 361 CATTTTCAGTAGCAACATTAATCCTTTTCATGTTCCCTTACAACATCCACAAGACCCTCG 420
Query 431 ggagatggaggagaagattgaggaagagaaagaagaagagatcaatgtagagaagccatt 490
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 421 GGAGATGGAGGAGAAGATTGAAGAAGAGAAAGAGGAAGAGATAAATGTAGAGAAGCCATT 480
Query 491 actggagaagaaaaataagaagactaaaaagaatgatgctaatgaaacttgcaaaccaaa 550
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 481 ACTGGAGAAGAAAAATAAGAAGACTAAGAAGAATGATGCTACTGAAACTTGCAAACCAAA 540
Query 551 gaagaagaaga---CAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGCTA 607
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 GAAGAAGAAGAAGACAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGTTA 600
Query 608 ATTTTATCT-A----AAATTTCATGGACTATGCATT-ATTTCGTATTTGTTTAAATCTAA 661
||||||| | | ||||| | ||||||||||||| ||||||| |||||||||||||||
Sbjct 601 ATTTTATGTTATCTGAAATTCCTTGGACTATGCATTTATTTCGTTTTTGTTTAAATCTAA 660
Query 662 GTTTTTCTTTACCC 675
||||||||||||||
Sbjct 661 GTTTTTCTTTACCC 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24779896050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5