BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46795.1 Length=675 Score E Sequences producing significant alignments: (Bits) Value Ahg494298 jgi|Araly1|494298|fgenesh2_kg.8__114__AT5G46795.1 1014 0.0 > Ahg494298 jgi|Araly1|494298|fgenesh2_kg.8__114__AT5G46795.1 Length=674 Score = 1014 bits (549), Expect = 0.0 Identities = 635/674 (94%), Gaps = 15/674 (2%) Strand=Plus/Plus Query 17 aaTAACAAGTCTTATGGAGACGATTGAGCAACAAAAACATTCACTCTCTTCTTTGCCTAT 76 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 AATCACAAGTCTTATGGAGACGATTGAGCAACAAAGACATTCACTCTCTTCTTTGCCTAT 60 Query 77 GCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAATCTAGAGAGACAACAAAACCT 136 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 GCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAACCTAGAGAGACAACAAAACCT 120 Query 137 TCCGA-----AA-TGGAAAGACGAAAGCGCGCCTACCACGCGTGGGTTAATCGATAGAGG 190 ||||| || |||||||| ||||||||| ||||||| ||||| |||||||||||||| Sbjct 121 TCCGATTCCGAAATGGAAAGAGGAAAGCGCGTCTACCACACGTGGATTAATCGATAGAGG 180 Query 191 CACGGCGATTAGAGAAGCGTATTTCAAAGGATCGTTACTAGATCGAATCGCGGCTTTGGA 250 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 181 CACGGCGATTAGAGAAGCGTATTTCAAAGGATCATTACTAGATCGAATCGCGGCTTTGGA 240 Query 251 GACCAGACTTTTTCAGATATGTTTGGAGTTGGAATCGAGCAGTGGATCTTCTACTTCAAC 310 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 241 GACCAGACTTTTTCAGATATGTTTGGAATTGGAATCGAGCAGTGCATCTTCTACTTCAAC 300 Query 311 TGGAGGGTCTGGTGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACC 370 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGGAGGGTCCGGAGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACC 360 Query 371 CATTTTCAGTAGCAACATTAATCCTTTTCATGTCCCCTTACAACATCCACAAGACCTTCG 430 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 361 CATTTTCAGTAGCAACATTAATCCTTTTCATGTTCCCTTACAACATCCACAAGACCCTCG 420 Query 431 ggagatggaggagaagattgaggaagagaaagaagaagagatcaatgtagagaagccatt 490 ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct 421 GGAGATGGAGGAGAAGATTGAAGAAGAGAAAGAGGAAGAGATAAATGTAGAGAAGCCATT 480 Query 491 actggagaagaaaaataagaagactaaaaagaatgatgctaatgaaacttgcaaaccaaa 550 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 481 ACTGGAGAAGAAAAATAAGAAGACTAAGAAGAATGATGCTACTGAAACTTGCAAACCAAA 540 Query 551 gaagaagaaga---CAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGCTA 607 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 541 GAAGAAGAAGAAGACAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGTTA 600 Query 608 ATTTTATCT-A----AAATTTCATGGACTATGCATT-ATTTCGTATTTGTTTAAATCTAA 661 ||||||| | | ||||| | ||||||||||||| ||||||| ||||||||||||||| Sbjct 601 ATTTTATGTTATCTGAAATTCCTTGGACTATGCATTTATTTCGTTTTTGTTTAAATCTAA 660 Query 662 GTTTTTCTTTACCC 675 |||||||||||||| Sbjct 661 GTTTTTCTTTACCC 674 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24779896050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5