BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46810.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356317 jgi|Araly1|356317|fgenesh1_pg.C_scaffold_8000104 1454 0.0
> Ahg356317 jgi|Araly1|356317|fgenesh1_pg.C_scaffold_8000104
Length=1140
Score = 1454 bits (787), Expect = 0.0
Identities = 973/1062 (92%), Gaps = 15/1062 (1%)
Strand=Plus/Plus
Query 10 AAGCCTCAAGAACCTGAATACGAATGCGTTGATATCTACAAACAACCTTCGCTACAACAC 69
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 88 AAGCCTCAAGAACCCGAATACGAATGCGTTGATATCTACAAACAACCTTCGCTACTACAC 147
Query 70 CCTAAACTCCAAAATCACCGAATCCAAATGAGACCGAGCGATGAAGCCTTAGCCATGCTC 129
||| ||||| ||||||| | ||||||||||||||||||||| ||| ||||||||||||
Sbjct 148 CCTCAACTCAAAAATCATCAAATCCAAATGAGACCGAGCGACGAATTCTTAGCCATGCTA 207
Query 130 TCAGGAGATACATCATCAGAAAACTTATCAAACGATGAAATGGTTGCTGAGTTTGATATA 189
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 208 TCAGGAGATACATCAGCAGAAAACTTATCAGACGATGAAATGGTTGCTGAGTTTGATATA 267
Query 190 CCAGAAGAAGGATGTCCTCAAGGACAAGTACCAATCCATAAACCAAGAAATAATTTCAAC 249
||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 268 CCAGAAGAAGGATGTCCACAAGGACAAGTACCAATCCATAAACCAAGAAATC-T--CAAC 324
Query 250 CACACCGAGAAACATTTTCAGCCTATTAATGGATTTGGAACTGTTGGTCAACATGCTGCG 309
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 325 CACACCGAGAAACCTTTTCAGCCTATTAATGGATATGGAACTGTTGGTCAACATGCTGCG 384
Query 310 GTAATGAAGAAAATCGATGCCACCCCGTGGCGTGGAGCATCAGCATGGATAAGTATTTAC 369
||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 385 ATAATGAAGAAAATCGATGCTATCCCGTGGCGTGGAGCATCAGCATGGATTAGTATTTAC 444
Query 370 CAACCTAAATTGACAAATAAAGAGCAATTCAGCATGGCTTTCATTTGGCTCAATACTGAG 429
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 445 CAACCTAAATTGAGAAATAAAGAGCAATTCAGCATGGCTTTGATTTGGCTCAATACTGAG 504
Query 430 TATGAAGGCGAACGCACCAGTGCCCACTTTGGTTGGGCTGTGATTCCTGCACTATATGGC 489
|| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 505 AATCAAGGCGAACGCACCAGTGCTCAGTTTGGTTGGGCTGTGATTCCTGCATTATATGGC 564
Query 490 GAT-AGCCGTACACGACTTACTGCATACTGGAGTCAAGATACATTCGAAAGCGGATGTTA 548
||| | ||||||| ||||||||||||| ||||||| |||| | |||||| |||||||||
Sbjct 565 GATTA-CCGTACAAGACTTACTGCATATTGGAGTCCGGATAAACTCGAAAACGGATGTTA 623
Query 549 CAATATAAAATGTAAGGGTTTCGTTCAAATTGATAGGAGACTCTTTCTTGGAGCCGGTTT 608
||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 624 CAATACGAAATGTAAGGGTTTCGTTCAAATTGACCGGAGAATCTTTCTTGGTGCCGGTTT 683
Query 609 TGCGAACACCTCTGTGGTGGGAGGC-CAAAATTTTAAAGCttt-ttttGCAATCAATCAG 666
| |||| |||||||||||||||||| || ||||| |||||||| |||| |||||||||||
Sbjct 684 TTCGAAAACCTCTGTGGTGGGAGGCACACAATTT-AAAGCTTTCTTTT-CAATCAATCAG 741
Query 667 GATCCAAAAACAAACAATTTGCTGCTGACAGTGGGGAAGATTTACTTAGGGTATTGGCCA 726
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 742 GATCCAAAAACAAAGAATTTGCTGCTGACAGTCGGGAAGATTTACATAGGGTATTGGCCA 801
Query 727 GAGGAACTTCTACCTTTTTTC-ACTGAA-GGAGCGGAGTCAGTTATATATGGTGGATTGA 784
|||||||||||||||| |||| | | || ||||||||| ||||||||||||||||||| |
Sbjct 802 GAGGAACTTCTACCTTATTTCTA-T-AATGGAGCGGAGGCAGTTATATATGGTGGATTCA 859
Query 785 CGAATGCTCCATCTGATGGCATTCAACCCTTTAATATAGTTAGCCCACCGATGGGTAACG 844
||||||||||||| || |||||||| ||| |||||||||| ||||||||||||||||
Sbjct 860 CGAATGCTCCATCCGAAAACATTCAACTATTTGATATAGTTAGTCCACCGATGGGTAACG 919
Query 845 GGAACAAACCGCTGGATGAGGAAGTTGATCTAAAGCATACTTGTTATATGCACTCTCTTA 904
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 920 GGAATAAACCGCTGGATGAGGAAGTGGATCTAAAACATACTTGTTATATGCACTCTCTTA 979
Query 905 AATATGTGACACAAGATTACAAGAGTGTCGATGTTGATACCAACAAGGTCGCCGAAGTTG 964
|||||||||||| |||||| |||||||||||| ||||| || |||||||| |||||||||
Sbjct 980 AATATGTGACACCAGATTATAAGAGTGTCGATATTGATTCCGACAAGGTCACCGAAGTTG 1039
Query 965 CGGACGCAGGTATATGTTACGACGCGATTTATTTTGATAAACTTGGGGGGTATGGACAAA 1024
|||| ||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1040 CGGATGCAGGTAAATGTTACGACGTGATTTATTTTGATAAACTTGGGCAATATGGACAAG 1099
Query 1025 CGTTTACCTTCGGTGGACCAGGTGGTCAT-TGTGATGTGTGA 1065
|||||||||||||||||||||||||| | ||||||||||||
Sbjct 1100 CGTTTACCTTCGGTGGACCAGGTGGTT-TCTGTGATGTGTGA 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5