BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46810.1 Length=1127 Score E Sequences producing significant alignments: (Bits) Value Ahg356317 jgi|Araly1|356317|fgenesh1_pg.C_scaffold_8000104 1454 0.0 > Ahg356317 jgi|Araly1|356317|fgenesh1_pg.C_scaffold_8000104 Length=1140 Score = 1454 bits (787), Expect = 0.0 Identities = 973/1062 (92%), Gaps = 15/1062 (1%) Strand=Plus/Plus Query 10 AAGCCTCAAGAACCTGAATACGAATGCGTTGATATCTACAAACAACCTTCGCTACAACAC 69 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 88 AAGCCTCAAGAACCCGAATACGAATGCGTTGATATCTACAAACAACCTTCGCTACTACAC 147 Query 70 CCTAAACTCCAAAATCACCGAATCCAAATGAGACCGAGCGATGAAGCCTTAGCCATGCTC 129 ||| ||||| ||||||| | ||||||||||||||||||||| ||| |||||||||||| Sbjct 148 CCTCAACTCAAAAATCATCAAATCCAAATGAGACCGAGCGACGAATTCTTAGCCATGCTA 207 Query 130 TCAGGAGATACATCATCAGAAAACTTATCAAACGATGAAATGGTTGCTGAGTTTGATATA 189 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 208 TCAGGAGATACATCAGCAGAAAACTTATCAGACGATGAAATGGTTGCTGAGTTTGATATA 267 Query 190 CCAGAAGAAGGATGTCCTCAAGGACAAGTACCAATCCATAAACCAAGAAATAATTTCAAC 249 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| Sbjct 268 CCAGAAGAAGGATGTCCACAAGGACAAGTACCAATCCATAAACCAAGAAATC-T--CAAC 324 Query 250 CACACCGAGAAACATTTTCAGCCTATTAATGGATTTGGAACTGTTGGTCAACATGCTGCG 309 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 325 CACACCGAGAAACCTTTTCAGCCTATTAATGGATATGGAACTGTTGGTCAACATGCTGCG 384 Query 310 GTAATGAAGAAAATCGATGCCACCCCGTGGCGTGGAGCATCAGCATGGATAAGTATTTAC 369 ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| Sbjct 385 ATAATGAAGAAAATCGATGCTATCCCGTGGCGTGGAGCATCAGCATGGATTAGTATTTAC 444 Query 370 CAACCTAAATTGACAAATAAAGAGCAATTCAGCATGGCTTTCATTTGGCTCAATACTGAG 429 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 445 CAACCTAAATTGAGAAATAAAGAGCAATTCAGCATGGCTTTGATTTGGCTCAATACTGAG 504 Query 430 TATGAAGGCGAACGCACCAGTGCCCACTTTGGTTGGGCTGTGATTCCTGCACTATATGGC 489 || ||||||||||||||||||| || |||||||||||||||||||||||| |||||||| Sbjct 505 AATCAAGGCGAACGCACCAGTGCTCAGTTTGGTTGGGCTGTGATTCCTGCATTATATGGC 564 Query 490 GAT-AGCCGTACACGACTTACTGCATACTGGAGTCAAGATACATTCGAAAGCGGATGTTA 548 ||| | ||||||| ||||||||||||| ||||||| |||| | |||||| ||||||||| Sbjct 565 GATTA-CCGTACAAGACTTACTGCATATTGGAGTCCGGATAAACTCGAAAACGGATGTTA 623 Query 549 CAATATAAAATGTAAGGGTTTCGTTCAAATTGATAGGAGACTCTTTCTTGGAGCCGGTTT 608 ||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||| Sbjct 624 CAATACGAAATGTAAGGGTTTCGTTCAAATTGACCGGAGAATCTTTCTTGGTGCCGGTTT 683 Query 609 TGCGAACACCTCTGTGGTGGGAGGC-CAAAATTTTAAAGCttt-ttttGCAATCAATCAG 666 | |||| |||||||||||||||||| || ||||| |||||||| |||| ||||||||||| Sbjct 684 TTCGAAAACCTCTGTGGTGGGAGGCACACAATTT-AAAGCTTTCTTTT-CAATCAATCAG 741 Query 667 GATCCAAAAACAAACAATTTGCTGCTGACAGTGGGGAAGATTTACTTAGGGTATTGGCCA 726 |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 742 GATCCAAAAACAAAGAATTTGCTGCTGACAGTCGGGAAGATTTACATAGGGTATTGGCCA 801 Query 727 GAGGAACTTCTACCTTTTTTC-ACTGAA-GGAGCGGAGTCAGTTATATATGGTGGATTGA 784 |||||||||||||||| |||| | | || ||||||||| ||||||||||||||||||| | Sbjct 802 GAGGAACTTCTACCTTATTTCTA-T-AATGGAGCGGAGGCAGTTATATATGGTGGATTCA 859 Query 785 CGAATGCTCCATCTGATGGCATTCAACCCTTTAATATAGTTAGCCCACCGATGGGTAACG 844 ||||||||||||| || |||||||| ||| |||||||||| |||||||||||||||| Sbjct 860 CGAATGCTCCATCCGAAAACATTCAACTATTTGATATAGTTAGTCCACCGATGGGTAACG 919 Query 845 GGAACAAACCGCTGGATGAGGAAGTTGATCTAAAGCATACTTGTTATATGCACTCTCTTA 904 |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 920 GGAATAAACCGCTGGATGAGGAAGTGGATCTAAAACATACTTGTTATATGCACTCTCTTA 979 Query 905 AATATGTGACACAAGATTACAAGAGTGTCGATGTTGATACCAACAAGGTCGCCGAAGTTG 964 |||||||||||| |||||| |||||||||||| ||||| || |||||||| ||||||||| Sbjct 980 AATATGTGACACCAGATTATAAGAGTGTCGATATTGATTCCGACAAGGTCACCGAAGTTG 1039 Query 965 CGGACGCAGGTATATGTTACGACGCGATTTATTTTGATAAACTTGGGGGGTATGGACAAA 1024 |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1040 CGGATGCAGGTAAATGTTACGACGTGATTTATTTTGATAAACTTGGGCAATATGGACAAG 1099 Query 1025 CGTTTACCTTCGGTGGACCAGGTGGTCAT-TGTGATGTGTGA 1065 |||||||||||||||||||||||||| | |||||||||||| Sbjct 1100 CGTTTACCTTCGGTGGACCAGGTGGTT-TCTGTGATGTGTGA 1140 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42011454534 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5