BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46830.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915381 jgi|Araly1|915381|Al_scaffold_0008_132 1779 0.0
> Ahg915381 jgi|Araly1|915381|Al_scaffold_0008_132
Length=1512
Score = 1779 bits (963), Expect = 0.0
Identities = 1373/1560 (88%), Gaps = 72/1560 (5%)
Strand=Plus/Plus
Query 1 ATGATTAATACCGACGATAACTTATTGATGATCGAAGCTCTCTTGACCTCCGATCCGTCG 60
||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||| ||||
Sbjct 1 ATGATTAATTCCGACGATAACTTATCAATGCTCGAAGCTCTCTTCACCTCCGATCTGTCG 60
Query 61 CCACCATTACTTCCGGCGAATCTCAGCCTCGAGACTACTCTCCCGAAGCGTTTACATGCT 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ---CCATTACCTCCGGCGAATCTCAGCCTCGAGACTACTCTCCCGAAGCGTTTACATGCT 117
Query 121 GTGTTGAATGGAACCCACGAGCCCTGGAGTTACGCCATTTTCTGGAAACCGTCGTACGA- 179
||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct 118 GTGCTGAATGGAACCAACGAGCCCTGGACTTACGCCATTTTCTGGAAACCGTCATACGAC 177
Query 180 T--GACTTTTCCGGTGAAGCAGTTCTCAAATGGGGCGACGGAGTTTACACTGGTGGCAAC 237
| ||| ||||||||||| |||| ||||||||||||||||||||||||| ||| ||| ||
Sbjct 178 TATGACATTTCCGGTGAATCAGTACTCAAATGGGGCGACGGAGTTTACAATGGCGGCGAC 237
Query 238 GAGGAAAAGACACGAGGGAGGTTGAGGAGGAAGAAGACGATTCTGTCGTCTCCGGAGGAG 297
|||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||
Sbjct 238 GAGGAAAAGACACGAGAGAGGTTGAGGAGGAAGAAGACGATTCCGTTGTCTCCGGCGGAG 297
Query 298 AAAGAGCGTCGGAGTAATGTTATTCGGGAGCTTAACTTGATGATCTCCGGCGAAGCGTTT 357
| ||||||||||||||||||| | ||||| ||||||| |||||||||||||||||| ||
Sbjct 298 AGAGAGCGTCGGAGTAATGTTCTCCGGGAACTTAACTCGATGATCTCCGGCGAAGC-TTC 356
Query 358 CC-GGTGGTTGAAGACGAC---GTCAGTGATGACGATGACGTGGAAG------TGACGGA 407
|| ||||||||||||||| |||| | | || ||||||||||||| |||| ||
Sbjct 357 CCCGGTGGTTGAAGACGAATATGTCAATAAGGATGATGACGTGGAAGCAGAAGTGACTGA 416
Query 408 TATGGAGTGGTTCTTCTTGGTTTCCATGACGTGGAGTTTTGGTAACGGATCCGGGTTAGC 467
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 TATGGAGTGGTTTTTCTTGGTTTCCATGACGTGGAGTTTTGGTAGCGGATCCGGGTTAGC 476
Query 468 GGGTAAGGCGTTTGCTAGCTATAACCCGGTTTTGGTTACCGGTTCGGATCTGATTTACGG 527
|||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 477 GGGTAAGGCGTTTGCTAGTTATAACCCGGTTTGGGTTACCGGGTCGGATCAGATTTACGG 536
Query 528 GTCGGGTTGTGATCGGGCTAAACAAGGAGGGGATGTAGGGTTACAGACCATCT-TGTGTA 586
||||||||||| ||||||||||||||||| ||| |||||||||| ||||| | ||||||
Sbjct 537 ATCGGGTTGTGAACGGGCTAAACAAGGAGGTGATTTAGGGTTACAAACCAT-TGTGTGTA 595
Query 587 TTCCTTCACATAACGGAGTGTTGGAGCTTGCATCCACGGAGGAGATCCGACCAAATTCGG 646
||||||| |||| |||||||||||||||| |||||||||| | |||| || ||| ||||
Sbjct 596 TTCCTTCGGATAATGGAGTGTTGGAGCTTGGATCCACGGAGCATATCCAACAAAACTCGG 655
Query 647 ATCTTTTTAATAGGATCCGGTTTCTTTTTG-----GA-GGATCCAAATATTTTTCTGGAG 700
|||||||||||| ||||||||| |||||| || ||||||||| ||||||| ||||
Sbjct 656 ATCTTTTTAATAAGATCCGGTTCCTTTTTAATTTTGAAGGATCCAAAGATTTTTCCGGAG 715
Query 701 CCCCGAATTCGAACTCGGAGCTTTTCCCATTTCAGTTAGAGAGCAG-TTGTTCAAGTACT 759
||||||||| |||||||||||||||| |||| |||||||||| | | || |||||||||
Sbjct 716 CCCCGAATTTGAACTCGGAGCTTTTCTCATTCCAGTTAGAGA-CTGGTTATTCAAGTACC 774
Query 760 GTAACCGGTAACCCGAATCCTAGTCCGGTTTATCTACAGAACCGGTATAATTTGAACTTC 819
||||||| |||||||||||| ||| | || | | | | | ||| |||
Sbjct 775 GTAACCGATAACCCGAATCCGAGT----T--AT--A-A-------T-T--T--GAATTTC 813
Query 820 TCGACGTCATCTTCCACATTGGCGAGAGCTCCATGCGGCGATGTACTGAGTTTTGGCGAG 879
|||||||| ||||| |||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 814 TCGACGTCGTCTTCAACATCGGCGATAGCTAGTTGCGGCGATGTACTGAGTTTTGGCGAC 873
Query 880 AATGTTAAACAGAGTTTTGAAAATCGGAACCCTAATACTTATTCTGATCAGATTCAAAAC 939
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 874 AATGTTAAACAGAGTTCTGAAAATCTGAACCCTAATACTTATTCTGATCAGATCCAAAAC 933
Query 940 GTCGTCCCTCACGCGACGGTGATGCTGGAGAAGAAGAAGGGAAAAAAGCGCGGGAGAAAA 999
| || ||| | |||||| |||||||||| |||||||||||||||||||||||
Sbjct 934 G-CG------ACG-G----TGATGCCGGAGAAGAAGCAGGGAAAAAAGCGCGGGAGAAAA 981
Query 1000 CCGGCGCATGGTAGAGA-CAAGCCTTTGAACCACGTGGAAGCAGAGAGGATGAGACGTGA 1058
||||||||||||||||| || ||| ||||||||||||||||||||||| |||||||||||
Sbjct 982 CCGGCGCATGGTAGAGATCA-GCCGTTGAACCACGTGGAAGCAGAGAGAATGAGACGTGA 1040
Query 1059 GAAGCTAAACCACAGATTCTACGCATTACGAGCGGTTGTACCAAACGTATCGAAAATGGA 1118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1041 GAAGCTAAACCACAGATTCTACGCGTTACGAGCGGTTGTACCAAACGTATCGAAAATGGA 1100
Query 1119 CAAAACGTCGTTGCTCGAAGACGCGGTTTGTTACATAAACGAGCTGAAATCAAAAGCTGA 1178
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1101 CAAAACGTCGTTGCTCGAAGACGCGGTTCGTTACATAAACGAACTGAAATCAAAAGCTGA 1160
Query 1179 AAACGTTGAATTGGAGAAACATGCGATTGAGATTCAGTTCAATGAACTCAAGGAGATTGC 1238
||||| |||| ||||||| | |||||| |||||||| | |||| ||| || ||||| ||
Sbjct 1161 AAACGCCGAATCGGAGAAAAACGCGATTCAGATTCAGCTGAATGGACTTAAAGAGATGGC 1220
Query 1239 AGGACAACGAAACGCAATTCCTAGCGTTTGTAAATACGAGGAAAAGGCATCAGAGATGAT 1298
||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||
Sbjct 1221 AGGACAACGAAACGCGATTCATAGCGTTTGTAAATACGAGGAAAACGCGTCAGAGATGAC 1280
Query 1299 GAAGATCGAAGTGAAGATTATGGAAAGTGATGATGCAATGGTTAGAGTTGAATCAAGGAA 1358
|| |||||||||||||||||| |||||||| | | |||||||||| ||||| || ||
Sbjct 1281 GA---TCGAAGTGAAGATTATGGGAAGTGATGC-G-A-TGGTTAGAGTGGAATCGAGTAA 1334
Query 1359 G-GATCATCATCCAGGAGCGAGATTGATGAATGCTTTGATGGATTTGGAGTTAGAAGTGA 1417
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 GAG-TGATCATCCAGGAGCGAGATTGATGAATGCTTTGATGGATTTGGAGTTAGAAGTGA 1393
Query 1418 ATCATGCGAGCATT-TCTGTGATGAACGATCTTATGATACAACAAGCGAACGTGAAGATG 1476
|| | |||||| || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1394 ATAACGCGAGC-TTGTCTGTGATGAATGATTTTATGATACAACAAGCGAACGTGAAGATG 1452
Query 1477 GGGTTGAGAATCTACAAGCAGGAAGAGCTTAGGGATTTGTTGATGTCGAAAATTAGCTGA 1536
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 1453 GGGTTGAGAATCTACAAGCAAGAAGAGCTTAGGGATGTGTTGATATCGAAAATTAGCTGA 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5