BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46850.2
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915379 jgi|Araly1|915379|Al_scaffold_0008_130 1177 0.0
> Ahg915379 jgi|Araly1|915379|Al_scaffold_0008_130
Length=864
Score = 1177 bits (637), Expect = 0.0
Identities = 766/829 (92%), Gaps = 6/829 (1%)
Strand=Plus/Plus
Query 262 GGTTGGAACAAATTATAGAGATTCTCATGAATTTTTCGATTCCGATACAATCTGTATCTC 321
||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct 36 GGTTGGAACAAATTATAGAGATTCTGATGAATTCTTCAATTCCGATTCAATCTGTATCTC 95
Query 322 TGATCAATACATTATGGAGTCTTATTTCACTACATACACTTCCTTAGACGACTCAGAGTT 381
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 96 TGATCAATACATTATGGAGTCTTATTTCACTAGACACACTTCCTTAGACGATTCAGAGTT 155
Query 382 TCGAAACTTCTTGCTTCTTCAACAATGTTCTGACAAAGTTCCTACTCAAGATTCAAACAT 441
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 156 TCGAAACTTCTTGCTTCTTCAACAATGTTCTAACAAAGTTCATACTCAAGATTCAAATAT 215
Query 442 TGTTCCTGCAACTTCATTTATACAACATAGAAACATTACTGGTGAAGGTTCACATCGTAA 501
||||||| |||||||||| |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 216 TGTTCCTTCAACTTCATTGATACAACACAGAAACATTACAGGTGAAGGTTCTCATCGTAA 275
Query 502 TCTCATCACATCCATCAAGCTT---CTTCTTCA---TCACTCAGAGTCTCAGTTTCGTGA 555
|||| |||||||||||||| || |||||||| |||||| |||||| ||||||| ||
Sbjct 276 TCTCCTCACATCCATCAAGTTTCAGCTTCTTCATCTTCACTCTGAGTCTGAGTTTCGCGA 335
Query 556 GCTCGTGATCGTTGAACGGTTGCCTTTGGGTGTTTTTGCTGATCCTTTTGAGCTTCAGAG 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 GCTCGTGATCGTTGAACGGTTGCCTTTGGGTGTTTTTGCTGATCCTTTTGAGCTTCAGAG 395
Query 616 TCTTCAACAACGCAGAGCTTTCAGTGACGTATCTGTGTTTGGTGACACAAATCTTGAGCT 675
|||||| ||||| | || |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 396 TCTTCAGCAACGTAAAGTTTTCAGTGACGTATCTGTGTTTGGAGACACGAATCTTGAGCT 455
Query 676 GCCTTCGTTTAGATCGAACAGATCCGTCGTTGAGATTCATGTTGAAATCAGCTCTAGAAA 735
|||||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |
Sbjct 456 ACCTTCGTTTAGATCAAACAGGTCTGTCGTTGAGATTCATGTCGAAATCAGTTCTAGGGA 515
Query 736 TTATGAAAATGGTGAAATAAGCTTTAAGCTTCCTTTACATGCTCGGTATCAGCCTCTGGA 795
|| ||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 516 TTGTGAAAATGGTGGAATCAGCTTAAAGCTTCCTTTACATGCTCGTTATCAGCCTCTGGA 575
Query 796 CGACAGTGGATACTCTAGAGTGGAGTTTGGCGAGCCAGACTTGTTCTTGTGCTCGAGCCA 855
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 576 CGACAGTGGATACTCTAGAGTGGAGTTTGGAGAGCCGGACTTGTTCTTGTGCTCGAGCCA 635
Query 856 TGTACAAAACCAGCGACGTGAACGGAGGAGATGTTTGGTTTTGTCGATTGGCAGATCGAA 915
||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 636 TGTACAAAACCAGCGACATGAACAGAGAAGATGTTTGGTTTTGTTGATTGGCAGATCGAA 695
Query 916 GACTGAAACCAGGTCTGTTTTCTGGGATATCCCTGCCGGAATCAGGGGTCATACAGAGTA 975
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 696 GACTGAAACCAGGTCTGTTTTCTGGGATATCCCAGCCGGAATCAGGGGTCATACAGAGTA 755
Query 976 TGTTTCCGCCTTGACATTCGCCGCTGCGGTTTTTTCTGCATTTTCAATACTCGTGGCATC 1035
||||||| |||||||||| || ||||||||||| ||||| |||||||| || ||||||||
Sbjct 756 TGTTTCCTCCTTGACATTTGCAGCTGCGGTTTTGTCTGCGTTTTCAATTCTTGTGGCATC 815
Query 1036 GGTTTTGAGCTCAAAGGGTGAATCTTGTAAAAACTTGAAGCAGTCATGA 1084
|||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 816 GGTTTTGAGCTCCAAGGTTGAATCTTGTAAAAACTCAAAGCAGTCATGA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5