BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46860.1 Length=1337 Score E Sequences producing significant alignments: (Bits) Value Ahg494291 jgi|Araly1|494291|fgenesh2_kg.8__107__AT5G46860.1 1860 0.0 Ahg493104 jgi|Araly1|493104|fgenesh2_kg.7__2537__AT4G17730.1 597 6e-170 > Ahg494291 jgi|Araly1|494291|fgenesh2_kg.8__107__AT5G46860.1 Length=1312 Score = 1860 bits (1007), Expect = 0.0 Identities = 1206/1298 (93%), Gaps = 30/1298 (2%) Strand=Plus/Plus Query 57 AACGCTTTTCAA-TCTTCGTCTATCTGTCTCCACGATCCACGCCTTGACCTTCGtttttt 115 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28 AACGCTTTTCAATTTTTCGTCTATCTGTCTCCACGATCCACGCCTTGACCTTCGTTTTTT 87 Query 116 ttttCTCAGAGATTAGAGAAAACTCCGATAACCAATTTCTCAATCTTTTTGTAGATCCAA 175 ||||||| ||||||||||||||||| |||||||||||||| | ||||||| || Sbjct 88 TTTTCTC-------AGAGAAAACTCCGATAAGCAATTTCTCAATCTCGTCGTAGATCGAA 140 Query 176 TTTTTCCAGGaaaaaaaGA--GGTTTCGCGAAGAAGATGAGTTTTCAAGATTTAGAATCA 233 ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 141 CTTTTCCA-GAAAAAAAGAGTGGTTTCACGAAGAAGATGAGTTTTCAAGATTTAGAATCG 199 Query 234 GGAAGAGGAAGATCAACGAGGAA-ATTCAATGGTGGTCGACAAGATTCGACACAAGCCGT 292 |||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||| Sbjct 200 GGAAAAGGAAGATCGACGAGGAAGA-TCAATGGTGGTCGACAAGATTCGACACAAGCCGT 258 Query 293 TGCTTCTGGAATATTCCAGATCAATACCGGAGTCTCCACGTTTCAGCGACTCGTTAACAC 352 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 259 TGCTTCTGGAATTTTCCAGATCAATACCGGAGTCTCCACGTTTCAACGACTCGTTAACAC 318 Query 353 ACTTGGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGGTTGCA 412 |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 319 ACTTGGTACTCCTAGAGATACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGATTGCA 378 Query 413 TATTGGACAGCTTGTGAAGGATACTTCAGCTAAACTTAAAGA-AGCTAGTGAAACTGATC 471 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 379 TATTGGACAGCTTGTGAAGGATACTTCAGCTAAACTTAAA-ATAGCTAGTGAAACTGATC 437 Query 472 ATCAAAGCGGTGTCAATCCAAGTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTC 531 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 ATCAAAGTGGTGTCAATCCAAGTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTC 497 Query 532 AAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTT 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 AAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTT 557 Query 592 ATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGCTATACGGCGGGTGAGGTGGATA 651 |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| Sbjct 558 ATACTCCTTTCGTGCCTCAATCCGCTCTTCCCTCTAGTTATACGGCGGGTGAGGTAGATA 617 Query 652 AGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAA-AGACAAGAACTTGTATTGTTA 710 |||| |||||||||||||||||| |||||||||| ||| || || ||||||||||||||| Sbjct 618 AGGTCCCGGAACAGCGGGCACAAGTTCAGGAGTC-AAAGAGGCAGGAACTTGTATTGTTA 676 Query 711 GACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAA 770 |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 677 GACAACGAGATTGCATTCAATGAAGCTGTGATCGAAGAAAGAGAGCAAGGAATACAAGAA 736 Query 771 ATCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAAC 830 |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 737 ATCCATCATCAGATTGGCGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAAT 796 Query 831 GATCAAGGAGTCATGATAGATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACT 890 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 797 GATCAAGGAGTCATGATAGATGATATCGGTACTCACATTGACAACTCCCGTGCTGCAACT 856 Query 891 TCACAAGGAAAATCTCAGCTTGTGCAAGCCGCGAAAACACAAAAATCAAACTCCTCTCTG 950 |||||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||| Sbjct 857 TCACAAGGAAAATCTCAGCTGGCGCAAGCCGCGAAAACACAAAGATCAAACTCATCTCTG 916 Query 951 ACATGCTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATAGTACTCGCA 1010 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 917 ACATGCTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATCGTACTTGCG 976 Query 1011 GCTTGATTTCGAAC-AGCAAGAACATTTCGTTTGTGTGTGTTCATTGATCTTAAGGCATC 1069 ||||||||||||| ||||| |||| ||| ||| |||||||||| ||| |||| ||||| Sbjct 977 GCTTGATTTCGAAAGAGCAACAACAAGTCGCTTGGGTGTGTTCATCGATTTTAAAGCATC 1036 Query 1070 -AATGACTGGAACTACTTGGTATATATTATATGTTGAAGAGAACACTTAGAAgttggttt 1128 || || | ||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 1037 GAA-GAGTTGAACTACTTGGTATATAATATATGTTGAAGACAACACTTAGAAGTTGGTTT 1095 Query 1129 tgtgtttgtttgggttggttc-agttcggtttga-ggttctattggttAATGTAATAGTG 1186 |||||| |||||| ||||||| | |||||||||| ||||||||||||||||||||||||| Sbjct 1096 TGTGTTGGTTTGGTTTGGTTCGA-TTCGGTTTGAAGGTTCTATTGGTTAATGTAATAGTG 1154 Query 1187 TGTGCGTGTG--TG-G-CTTTTTTGTTGTGCAAACATTTTGTTGGAGATGACAGAAACTC 1242 |||||||||| || | ||||||||||||| |||||||||||||||||||||||||| || Sbjct 1155 TGTGCGTGTGCGTGTGGCTTTTTTGTTGTGTAAACATTTTGTTGGAGATGACAGAAATTC 1214 Query 1243 TGTTTTGTTTGTGATTCTCCTATGTTCTC---CTAAATCTTTGTTGAGAGGAAACAAAAA 1299 |||||||||||||||||||||| || || |||||||| ||||||||||||||||||| Sbjct 1215 TGTTTTGTTTGTGATTCTCCTAAGTCCTAAATCTAAATCTCTGTTGAGAGGAAACAAAAA 1274 Query 1300 CTATTTGCTCAATGAGTGTCACAAAGAAGTTTGAAACC 1337 | ||||||||||||| |||||||||||||||||||||| Sbjct 1275 CGATTTGCTCAATGACTGTCACAAAGAAGTTTGAAACC 1312 > Ahg493104 jgi|Araly1|493104|fgenesh2_kg.7__2537__AT4G17730.1 Length=1344 Score = 597 bits (323), Expect = 6e-170 Identities = 688/856 (80%), Gaps = 58/856 (7%) Strand=Plus/Plus Query 207 AAG-ATGAGTTTTCAAGATTTAGAATCAGGAAGAGGAAGATCA--A-------CGAGGAA 256 ||| ||||||||||||||||||||| | ||||||||||||||| | | ||||| Sbjct 245 AAGAATGAGTTTTCAAGATTTAGAAGCGGGAAGAGGAAGATCATTAGCTTCTTCAAGGAA 304 Query 257 -ATTCAA---TGGTGGTCGACAAGATTCGACACAAGCCGTTGCTTCTGGAATATTCCAGA 312 | ||| ||||||| ||||||| | || ||||| ||||||||||| ||||| |||| Sbjct 305 CA-CCAATGGTGGTGGTAGACAAGACACCACTCAAGCTGTTGCTTCTGGTATATTTCAGA 363 Query 313 TCAATACCGGAGTCTCCACGTTT-CAGCGACTCGTTAACACACTTGGTACTCCCAAAGAT 371 |||| || | || ||||| ||| || || || || ||||| ||||||||||| ||||| Sbjct 364 TCAACACAAGTGTTTCCAC-TTTCCATCGTCTTGTCAACACTCTTGGTACTCCTAAAGAC 422 Query 372 ACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAG 431 ||||| ||||| || |||||||||||||||||||| || |||||||||||||| ||| || Sbjct 423 ACACCTGAGCTTCGAGAGAAGCTGCACAAGACAAGATTACATATTGGACAGCTAGTG-AG 481 Query 432 -GATACTTCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGCGGTGTCAATCC 490 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 482 AGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAATCA 541 Query 491 AA-GTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTCAAGCTGTTTTAAAAGAGT 549 || | |||||||||| |||||||||||||||| ||||||||||||||| || ||||||| Sbjct 542 AAAG-AAGAAGATTGTGGATGCTAAGCTTGCAAAGGACTTTCAAGCTGTGTTGAAAGAGT 600 Query 550 TTCAGAAAG-CTCAACAAACT-GCTGCTGAAAGAGAAACCACT-TATACTCCT-TTCGTG 605 |||| |||| |||| | || |||||||||||||||||| | ||| ||||| || || Sbjct 601 TTCA-AAAGGCTCAGCGT-CTTGCTGCTGAAAGAGAAACCG-TATATGCTCCTCTT-GT- 655 Query 606 CCTCAATC--TGCTCTTCCCTCTAGCTATA-CGGCGG----G-TGA-G-G--TGGA--TA 651 || ||| | | |||||||||| || |||| | | | ||| | | |||| || Sbjct 656 CCACAAGCCAT-CTCTTCCCTCAAGATATAGCTACACAATAGATGATGTGAATGGAGATA 714 Query 652 AGGTA-CCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGACAAGAACTTGTATTGTTA 710 || | || || |||||||| | ||| ||| || |||||||||||||||||| | || Sbjct 715 AGC-AGCCAGAGCAGCGGGCCCTTCTTGTGGAATCAAAAAGACAAGAACTTGTACTCTTG 773 Query 711 GACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAA 770 ||||| |||||||| ||||| |||||| | ||||| |||||||||||||| ||||||||| Sbjct 774 GACAATGAGATTGCGTTCAATGAGGCTATTATTGAGGAAAGAGAGCAAGGGATACAAGAA 833 Query 771 ATCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTG-CGGT-TCTGGTTA 828 ||||| ||||||||||| ||||| |||| || |||||||| |||| | || | |||| | Sbjct 834 ATCCAGCAGCAAATTGGCGAGGTGCACGAAATCTTCAAAGA-CTTGGCAGTGT-TGGT-A 890 Query 829 -ACGATCAAGGAGTCATGATAGATGATATTGGTACTCACATTGACAACTCCCGTGCTGCA 887 ||||||||||| |||||| |||||||||||||||||||| || |||||| |||||| Sbjct 891 CACGATCAAGGAACCATGATTGATGATATTGGTACTCACATCGATAACTCCTACGCTGCA 950 Query 888 ACTTCACAAGGAAAATCTCAGCTTGTGCAAGCCGCGAAA-ACACAAAAATCAAACTCCTC 946 ||| | ||||||||||| || || | ||||| | ||| ||||||| |||||| || || Sbjct 951 ACTGCTCAAGGAAAATCCCATCTCGCAAAAGCCTC-AAAGACACAAAGATCAAATTCTTC 1009 Query 947 TCTGACA-TG--CTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATAGT 1003 |||| | || ||||||||||||||| ||||| || || |||||||| || |||||||| Sbjct 1010 TCTGGTAATGTGCTTGCTCTTGGTGATTTTTGGTATCGTGCTCCTGATTGTTATTATAGT 1069 Query 1004 ACTCGCAGCTTGATTT 1019 ||||| | ||||||| Sbjct 1070 GCTCGCTGTTTGATTT 1085 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50017267104 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5