BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46860.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494291 jgi|Araly1|494291|fgenesh2_kg.8__107__AT5G46860.1 1860 0.0
Ahg493104 jgi|Araly1|493104|fgenesh2_kg.7__2537__AT4G17730.1 597 6e-170
> Ahg494291 jgi|Araly1|494291|fgenesh2_kg.8__107__AT5G46860.1
Length=1312
Score = 1860 bits (1007), Expect = 0.0
Identities = 1206/1298 (93%), Gaps = 30/1298 (2%)
Strand=Plus/Plus
Query 57 AACGCTTTTCAA-TCTTCGTCTATCTGTCTCCACGATCCACGCCTTGACCTTCGtttttt 115
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 AACGCTTTTCAATTTTTCGTCTATCTGTCTCCACGATCCACGCCTTGACCTTCGTTTTTT 87
Query 116 ttttCTCAGAGATTAGAGAAAACTCCGATAACCAATTTCTCAATCTTTTTGTAGATCCAA 175
||||||| ||||||||||||||||| |||||||||||||| | ||||||| ||
Sbjct 88 TTTTCTC-------AGAGAAAACTCCGATAAGCAATTTCTCAATCTCGTCGTAGATCGAA 140
Query 176 TTTTTCCAGGaaaaaaaGA--GGTTTCGCGAAGAAGATGAGTTTTCAAGATTTAGAATCA 233
||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 141 CTTTTCCA-GAAAAAAAGAGTGGTTTCACGAAGAAGATGAGTTTTCAAGATTTAGAATCG 199
Query 234 GGAAGAGGAAGATCAACGAGGAA-ATTCAATGGTGGTCGACAAGATTCGACACAAGCCGT 292
|||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 200 GGAAAAGGAAGATCGACGAGGAAGA-TCAATGGTGGTCGACAAGATTCGACACAAGCCGT 258
Query 293 TGCTTCTGGAATATTCCAGATCAATACCGGAGTCTCCACGTTTCAGCGACTCGTTAACAC 352
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 259 TGCTTCTGGAATTTTCCAGATCAATACCGGAGTCTCCACGTTTCAACGACTCGTTAACAC 318
Query 353 ACTTGGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGGTTGCA 412
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 319 ACTTGGTACTCCTAGAGATACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGATTGCA 378
Query 413 TATTGGACAGCTTGTGAAGGATACTTCAGCTAAACTTAAAGA-AGCTAGTGAAACTGATC 471
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 379 TATTGGACAGCTTGTGAAGGATACTTCAGCTAAACTTAAA-ATAGCTAGTGAAACTGATC 437
Query 472 ATCAAAGCGGTGTCAATCCAAGTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTC 531
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 ATCAAAGTGGTGTCAATCCAAGTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTC 497
Query 532 AAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTT 557
Query 592 ATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGCTATACGGCGGGTGAGGTGGATA 651
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 558 ATACTCCTTTCGTGCCTCAATCCGCTCTTCCCTCTAGTTATACGGCGGGTGAGGTAGATA 617
Query 652 AGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAA-AGACAAGAACTTGTATTGTTA 710
|||| |||||||||||||||||| |||||||||| ||| || || |||||||||||||||
Sbjct 618 AGGTCCCGGAACAGCGGGCACAAGTTCAGGAGTC-AAAGAGGCAGGAACTTGTATTGTTA 676
Query 711 GACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAA 770
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 677 GACAACGAGATTGCATTCAATGAAGCTGTGATCGAAGAAAGAGAGCAAGGAATACAAGAA 736
Query 771 ATCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAAC 830
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 737 ATCCATCATCAGATTGGCGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAAT 796
Query 831 GATCAAGGAGTCATGATAGATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACT 890
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 797 GATCAAGGAGTCATGATAGATGATATCGGTACTCACATTGACAACTCCCGTGCTGCAACT 856
Query 891 TCACAAGGAAAATCTCAGCTTGTGCAAGCCGCGAAAACACAAAAATCAAACTCCTCTCTG 950
|||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||
Sbjct 857 TCACAAGGAAAATCTCAGCTGGCGCAAGCCGCGAAAACACAAAGATCAAACTCATCTCTG 916
Query 951 ACATGCTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATAGTACTCGCA 1010
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 917 ACATGCTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATCGTACTTGCG 976
Query 1011 GCTTGATTTCGAAC-AGCAAGAACATTTCGTTTGTGTGTGTTCATTGATCTTAAGGCATC 1069
||||||||||||| ||||| |||| ||| ||| |||||||||| ||| |||| |||||
Sbjct 977 GCTTGATTTCGAAAGAGCAACAACAAGTCGCTTGGGTGTGTTCATCGATTTTAAAGCATC 1036
Query 1070 -AATGACTGGAACTACTTGGTATATATTATATGTTGAAGAGAACACTTAGAAgttggttt 1128
|| || | ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1037 GAA-GAGTTGAACTACTTGGTATATAATATATGTTGAAGACAACACTTAGAAGTTGGTTT 1095
Query 1129 tgtgtttgtttgggttggttc-agttcggtttga-ggttctattggttAATGTAATAGTG 1186
|||||| |||||| ||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 1096 TGTGTTGGTTTGGTTTGGTTCGA-TTCGGTTTGAAGGTTCTATTGGTTAATGTAATAGTG 1154
Query 1187 TGTGCGTGTG--TG-G-CTTTTTTGTTGTGCAAACATTTTGTTGGAGATGACAGAAACTC 1242
|||||||||| || | ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1155 TGTGCGTGTGCGTGTGGCTTTTTTGTTGTGTAAACATTTTGTTGGAGATGACAGAAATTC 1214
Query 1243 TGTTTTGTTTGTGATTCTCCTATGTTCTC---CTAAATCTTTGTTGAGAGGAAACAAAAA 1299
|||||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct 1215 TGTTTTGTTTGTGATTCTCCTAAGTCCTAAATCTAAATCTCTGTTGAGAGGAAACAAAAA 1274
Query 1300 CTATTTGCTCAATGAGTGTCACAAAGAAGTTTGAAACC 1337
| ||||||||||||| ||||||||||||||||||||||
Sbjct 1275 CGATTTGCTCAATGACTGTCACAAAGAAGTTTGAAACC 1312
> Ahg493104 jgi|Araly1|493104|fgenesh2_kg.7__2537__AT4G17730.1
Length=1344
Score = 597 bits (323), Expect = 6e-170
Identities = 688/856 (80%), Gaps = 58/856 (7%)
Strand=Plus/Plus
Query 207 AAG-ATGAGTTTTCAAGATTTAGAATCAGGAAGAGGAAGATCA--A-------CGAGGAA 256
||| ||||||||||||||||||||| | ||||||||||||||| | | |||||
Sbjct 245 AAGAATGAGTTTTCAAGATTTAGAAGCGGGAAGAGGAAGATCATTAGCTTCTTCAAGGAA 304
Query 257 -ATTCAA---TGGTGGTCGACAAGATTCGACACAAGCCGTTGCTTCTGGAATATTCCAGA 312
| ||| ||||||| ||||||| | || ||||| ||||||||||| ||||| ||||
Sbjct 305 CA-CCAATGGTGGTGGTAGACAAGACACCACTCAAGCTGTTGCTTCTGGTATATTTCAGA 363
Query 313 TCAATACCGGAGTCTCCACGTTT-CAGCGACTCGTTAACACACTTGGTACTCCCAAAGAT 371
|||| || | || ||||| ||| || || || || ||||| ||||||||||| |||||
Sbjct 364 TCAACACAAGTGTTTCCAC-TTTCCATCGTCTTGTCAACACTCTTGGTACTCCTAAAGAC 422
Query 372 ACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAG 431
||||| ||||| || |||||||||||||||||||| || |||||||||||||| ||| ||
Sbjct 423 ACACCTGAGCTTCGAGAGAAGCTGCACAAGACAAGATTACATATTGGACAGCTAGTG-AG 481
Query 432 -GATACTTCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGCGGTGTCAATCC 490
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 482 AGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAATCA 541
Query 491 AA-GTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTCAAGCTGTTTTAAAAGAGT 549
|| | |||||||||| |||||||||||||||| ||||||||||||||| || |||||||
Sbjct 542 AAAG-AAGAAGATTGTGGATGCTAAGCTTGCAAAGGACTTTCAAGCTGTGTTGAAAGAGT 600
Query 550 TTCAGAAAG-CTCAACAAACT-GCTGCTGAAAGAGAAACCACT-TATACTCCT-TTCGTG 605
|||| |||| |||| | || |||||||||||||||||| | ||| ||||| || ||
Sbjct 601 TTCA-AAAGGCTCAGCGT-CTTGCTGCTGAAAGAGAAACCG-TATATGCTCCTCTT-GT- 655
Query 606 CCTCAATC--TGCTCTTCCCTCTAGCTATA-CGGCGG----G-TGA-G-G--TGGA--TA 651
|| ||| | | |||||||||| || |||| | | | ||| | | |||| ||
Sbjct 656 CCACAAGCCAT-CTCTTCCCTCAAGATATAGCTACACAATAGATGATGTGAATGGAGATA 714
Query 652 AGGTA-CCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGACAAGAACTTGTATTGTTA 710
|| | || || |||||||| | ||| ||| || |||||||||||||||||| | ||
Sbjct 715 AGC-AGCCAGAGCAGCGGGCCCTTCTTGTGGAATCAAAAAGACAAGAACTTGTACTCTTG 773
Query 711 GACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAA 770
||||| |||||||| ||||| |||||| | ||||| |||||||||||||| |||||||||
Sbjct 774 GACAATGAGATTGCGTTCAATGAGGCTATTATTGAGGAAAGAGAGCAAGGGATACAAGAA 833
Query 771 ATCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTG-CGGT-TCTGGTTA 828
||||| ||||||||||| ||||| |||| || |||||||| |||| | || | |||| |
Sbjct 834 ATCCAGCAGCAAATTGGCGAGGTGCACGAAATCTTCAAAGA-CTTGGCAGTGT-TGGT-A 890
Query 829 -ACGATCAAGGAGTCATGATAGATGATATTGGTACTCACATTGACAACTCCCGTGCTGCA 887
||||||||||| |||||| |||||||||||||||||||| || |||||| ||||||
Sbjct 891 CACGATCAAGGAACCATGATTGATGATATTGGTACTCACATCGATAACTCCTACGCTGCA 950
Query 888 ACTTCACAAGGAAAATCTCAGCTTGTGCAAGCCGCGAAA-ACACAAAAATCAAACTCCTC 946
||| | ||||||||||| || || | ||||| | ||| ||||||| |||||| || ||
Sbjct 951 ACTGCTCAAGGAAAATCCCATCTCGCAAAAGCCTC-AAAGACACAAAGATCAAATTCTTC 1009
Query 947 TCTGACA-TG--CTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATAGT 1003
|||| | || ||||||||||||||| ||||| || || |||||||| || ||||||||
Sbjct 1010 TCTGGTAATGTGCTTGCTCTTGGTGATTTTTGGTATCGTGCTCCTGATTGTTATTATAGT 1069
Query 1004 ACTCGCAGCTTGATTT 1019
||||| | |||||||
Sbjct 1070 GCTCGCTGTTTGATTT 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5