BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46870.1
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915377 jgi|Araly1|915377|Al_scaffold_0008_128 1323 0.0
> Ahg915377 jgi|Araly1|915377|Al_scaffold_0008_128
Length=912
Score = 1323 bits (716), Expect = 0.0
Identities = 804/847 (95%), Gaps = 4/847 (0%)
Strand=Plus/Plus
Query 254 ATGTCGATGGTAACTGTCAAAGTTAGCAACGTTTCTCTTGAAGCAACAGAAAGAGATCTC 313
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGTCGATGGTAACTGTCAAAGTTAGCAACGTTTCTCTTGAATCAACAGAAAGAGATCTC 60
Query 314 AAGGAGTTCTTCTCTTTTTCCGGCGATATTGCTTACCTCGAGACTCAAAGCGAGAATGAT 373
||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 61 AAGGAATTCTTCTCTTTTTCCGGCGATATTGCTTACCTAGAAACACAAAGCGAGAATGAA 120
Query 374 GGTTCTAAATTAGCATATGTCACATTCAAGGATTTACAAGGAGCTGAAACCGCAGTTCTC 433
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTTCTAAATTAGCATATGTTACATTCAAGGATTTACAAGGAGCTGAAACCGCAGTTCTT 180
Query 434 CTCACCGGATCGACGATTGTTGATTCATCGGTCACAGTTACAATGTCACCAGATTACCAA 493
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 181 CTCACCGGATCGACGATTGTTGATTCATCGGTTACGGTTACAATGTCACCAGATTATCAA 240
Query 494 CTACCTCCTGATGCTTTAGCTTCCATTGAATCATTGAAAGAGAGCAATAAATCATCATCT 553
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTACCTCCTGAGGCTTTAGCTTCCATTGAATCATTGAAAGAGAGCAATAAATCATCATCA 300
Query 554 CCTACGCGAGAAGATGTATCGGTATTTAGAAAAGCTGAAGATGTTGTAAGTGGTATGATT 613
||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CCTTCTCGCGAAGATGTATCGGTATTTAGAAACGCTGAAGATGTTGTAAGTGGTATGATT 360
Query 614 TCAAAAGGGTTTGTTTTAGGTAAAGACGCTATAGCTAAAGCGAAGAGTCTTGATGAGAAG 673
|||||||||||| || |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 361 TCAAAAGGGTTTATTCTAGGAAAAGACGCGATAGCTAAAGCGAAGAGCCTTGATGAGAAG 420
Query 674 CATCAGTTGACATCAACAGCTTCAGCTAGAGTTACATCTTTCGACAAAAGAATCGGATTC 733
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 CATCAGTTGACATCAACAGCTTCAGCTAGAGTCACATCTTTCGACAAAAGAATCGGATTC 480
Query 734 ACGGAGAAAATCAACACCGGGACTACAGTTGTGAGCGAAAAAGTTAAAGAAGTTGATCAG 793
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 481 ACAGAGAAAATCAACACCGGGACAACGGTTGTGAGCGAAAAAGTTAAAGAAGTTGATCAG 540
Query 794 AAGTTTCAAGTCACAGAGAAAACAAAATCAGCAATAGCTGCTGCTGAGCAGACAGTGAGC 853
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
Sbjct 541 AAGTTTCAAGTCACAGAGAAAACTAAATCAGCAATAGCTGCAGCTGAGCAAACAGTGA-C 599
Query 854 -AATGCTGGTTCTGCTATAATGAAAAACCGGTATGTTTTAACCGGTGCCACGTGGGTTAC 912
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TAATGCTGGTTCTGCTATAATGAAAAACCGGTATGTTTTAACCGGTGCCACATGGGTTAC 659
Query 913 GGGTGCGTTTAACAGAGTGAGTAAAGCTGCTgaagaagttggacaaaaggcgaaagagaa 972
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 660 GGGTGCGTTTAACAAAGTGACTAAAGCTGCTGAAGAAGTTGGACAAAAGGCAAAAGAGAA 719
Query 973 agttggtttggctgaggaagaagaagaagagaagaagaaagTGGTTGATGAAGTTGCTAT 1032
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTTGGTATGGTTGAGGAAGAAGAAGAAGAGAAGAAGAAAGTGGTTGATGAAGTTGCTAG 779
Query 1033 -AGTTCATCTGACTGAATCACCAAAGGCTTTAGACCAATCAGAACAAGATTCAAAACTCC 1091
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CA-TCCATCTGACTGAAACACCAAAGGCTTTAGACCAATCAGAACAAGATTCAAAACTCT 838
Query 1092 CTGAATC 1098
|||||||
Sbjct 839 CTGAATC 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45328148313
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5